Wall clock time and date at job start Tue Mar 31 2020 11:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86802 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47025 * 274.98003 * 3 2 1 5 5 H 1.48504 * 109.47054 * 34.97930 * 3 2 1 6 6 H 1.48500 * 109.47087 * 154.97819 * 3 2 1 7 7 C 1.40125 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00334 * 173.81984 * 7 2 1 9 9 C 1.46199 * 119.99755 * 353.82286 * 7 2 1 10 10 O 1.21727 * 120.00138 * 6.08500 * 9 7 2 11 11 N 1.34776 * 120.00282 * 186.08181 * 9 7 2 12 12 C 1.39070 * 120.00238 * 185.12547 * 11 9 7 13 13 C 1.39275 * 119.93683 * 213.67667 * 12 11 9 14 14 C 1.37604 * 120.06964 * 180.23242 * 13 12 11 15 15 C 1.39833 * 119.93208 * 359.49930 * 14 13 12 16 16 C 1.47460 * 120.06670 * 180.23351 * 15 14 13 17 17 O 1.21509 * 120.00222 * 359.97438 * 16 15 14 18 18 O 1.34759 * 119.99960 * 180.02562 * 16 15 14 19 19 C 1.45200 * 116.99644 * 179.97438 * 18 16 15 20 20 H 1.08992 * 109.35934 * 329.99028 * 19 18 16 21 21 C 1.50065 * 109.36052 * 89.71884 * 19 18 16 22 22 C 1.29254 * 124.21518 * 137.48396 * 21 19 18 23 23 C 1.50067 * 124.02143 * 359.27231 * 22 21 19 24 24 C 1.53025 * 110.14609 * 17.25943 * 23 22 21 25 25 C 1.53027 * 109.35067 * 210.27027 * 19 18 16 26 26 C 1.39832 * 119.86695 * 0.24856 * 15 14 13 27 27 C 1.37614 * 119.92936 * 0.02562 * 26 15 14 28 28 H 0.96993 * 119.99631 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99819 * 5.13142 * 11 9 7 30 30 H 1.08006 * 119.96261 * 0.02562 * 13 12 11 31 31 H 1.07997 * 120.03331 * 179.77666 * 14 13 12 32 32 H 1.07995 * 117.96028 * 317.31312 * 21 19 18 33 33 H 1.08008 * 118.01568 * 179.37684 * 22 21 19 34 34 H 1.09003 * 109.35575 * 257.05090 * 23 22 21 35 35 H 1.08997 * 109.24448 * 137.40047 * 23 22 21 36 36 H 1.09000 * 109.63876 * 190.88330 * 24 23 22 37 37 H 1.09001 * 109.63944 * 70.24969 * 24 23 22 38 38 H 1.08990 * 109.64921 * 310.04030 * 25 19 18 39 39 H 1.09000 * 109.63963 * 70.46532 * 25 19 18 40 40 H 1.08001 * 120.03652 * 180.02562 * 26 15 14 41 41 H 1.08005 * 119.96128 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3827 2.1072 -1.3948 5 1 1.4945 2.6200 0.8027 6 1 3.5866 1.4120 0.5922 7 6 2.0071 -1.2135 0.0005 8 1 3.0823 -1.2163 -0.1001 9 6 1.2825 -2.4759 0.1373 10 8 0.0652 -2.4818 0.1394 11 7 1.9621 -3.6331 0.2612 12 6 1.2769 -4.8430 0.2841 13 6 1.7542 -5.8976 1.0585 14 6 1.0809 -7.0975 1.0795 15 6 -0.0893 -7.2541 0.3303 16 6 -0.8160 -8.5370 0.3546 17 8 -0.3977 -9.4596 1.0257 18 8 -1.9434 -8.6866 -0.3683 19 6 -2.6057 -9.9768 -0.2970 20 1 -1.8632 -10.7549 -0.1207 21 6 -3.5938 -9.9670 0.8325 22 6 -4.7832 -10.4679 0.7620 23 6 -5.3494 -11.1170 -0.4669 24 6 -4.2234 -11.4809 -1.4371 25 6 -3.3243 -10.2516 -1.6198 26 6 -0.5690 -6.1918 -0.4422 27 6 0.1118 -4.9961 -0.4634 28 1 -0.4849 0.8400 -0.0004 29 1 2.9293 -3.6220 0.3344 30 1 2.6556 -5.7745 1.6407 31 1 1.4536 -7.9160 1.6774 32 1 -3.2917 -9.5149 1.7656 33 1 -5.4089 -10.4149 1.6407 34 1 -6.0382 -10.4273 -0.9550 35 1 -5.8862 -12.0214 -0.1806 36 1 -4.6476 -11.7707 -2.3985 37 1 -3.6390 -12.3048 -1.0276 38 1 -3.9331 -9.3896 -1.8922 39 1 -2.5903 -10.4438 -2.4024 40 1 -1.4729 -6.3096 -1.0215 41 1 -0.2585 -4.1751 -1.0596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733391795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:39 Heat of formation + Delta-G solvation = -92.449599 kcal Electronic energy + Delta-G solvation = -24751.173347 eV Core-core repulsion = 20981.723096 eV Total energy + Delta-G solvation = -3769.450252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.55562 -39.29291 -38.27608 -36.90550 -35.88119 -33.66185 -32.60182 -31.38773 -30.68382 -30.32366 -29.28227 -26.55815 -24.28478 -22.84627 -22.60583 -22.31094 -20.92161 -19.78184 -18.39323 -17.87790 -17.58438 -17.17012 -16.43856 -15.99407 -15.65452 -15.53682 -14.68446 -14.46027 -14.07285 -13.92714 -13.58911 -13.36898 -13.19182 -13.16879 -12.99281 -12.73243 -12.66141 -12.45387 -12.04352 -11.95423 -11.50761 -11.38233 -11.25917 -11.16029 -10.99211 -10.82994 -10.67911 -10.42179 -10.34580 -10.11425 -9.51104 -9.33473 -9.00303 -8.62617 -7.90363 -7.31848 -6.46736 -4.93312 1.14493 1.86326 1.89039 2.85975 2.92437 3.01743 3.08996 3.12670 3.90152 4.11904 4.35963 4.42732 4.43421 4.44212 4.64255 4.78000 4.92533 5.02249 5.20330 5.22233 5.26284 5.35669 5.37082 5.49646 5.52766 5.56347 5.66068 5.76156 5.90361 5.91721 5.96129 6.07686 6.33977 6.40713 6.48780 6.61117 6.71703 6.78938 6.88612 7.15431 7.20657 7.57672 7.86671 7.98170 8.02015 8.73901 9.03277 10.23264 10.43876 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.002376 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.220853 B =11781.367782 C =12442.550658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.236 3.764 13 C -0.194 4.194 14 C -0.027 4.027 15 C -0.188 4.188 16 C 0.517 3.483 17 O -0.524 6.524 18 O -0.344 6.344 19 C 0.122 3.878 20 H 0.093 0.907 21 C -0.168 4.168 22 C -0.140 4.140 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.037 4.037 27 C -0.149 4.149 28 H 0.274 0.726 29 H 0.397 0.603 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 -17.667 -2.133 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.346 3.654 10 O -0.437 6.437 11 N -0.335 5.335 12 C 0.134 3.866 13 C -0.216 4.216 14 C -0.046 4.046 15 C -0.191 4.191 16 C 0.365 3.635 17 O -0.414 6.414 18 O -0.261 6.261 19 C 0.067 3.933 20 H 0.110 0.890 21 C -0.186 4.186 22 C -0.158 4.158 23 C -0.133 4.133 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.056 4.056 27 C -0.170 4.170 28 H 0.085 0.915 29 H 0.231 0.769 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.555 -17.693 -1.963 18.648 hybrid contribution 0.933 0.787 0.395 1.283 sum -4.622 -16.906 -1.568 17.597 Atomic orbital electron populations 1.69976 1.07235 1.28066 1.33024 1.25762 0.94722 1.00655 0.92475 0.86244 0.80247 0.80805 0.78918 1.19568 1.20160 1.18646 1.20864 0.94471 0.89102 1.52726 0.90763 1.18469 0.87492 0.82011 0.77461 1.90654 1.13588 1.85512 1.53901 1.44315 1.10098 1.04450 1.74671 1.18301 0.92296 0.86155 0.89825 1.20824 1.03794 0.93902 1.03082 1.20822 0.92015 0.96705 0.95073 1.18790 0.99497 0.92161 1.08664 1.21295 0.78163 0.88239 0.75812 1.90772 1.67508 1.42242 1.40922 1.86691 1.37847 1.36943 1.64650 1.21414 0.92951 0.84211 0.94722 0.88971 1.22271 0.95618 1.01465 0.99295 1.22024 0.95714 0.99160 0.98919 1.20540 0.98047 1.00462 0.94220 1.21599 0.96638 0.97290 0.99876 1.21682 0.99207 0.99253 0.95308 1.21244 0.97974 0.91331 0.95054 1.21339 0.96680 0.97806 1.01143 0.91544 0.76885 0.85477 0.85250 0.87402 0.87360 0.90347 0.90787 0.90632 0.91401 0.90129 0.90619 0.85126 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.20 11.85 55.55 0.66 -20.54 16 2 C 0.09 2.23 5.50 -17.35 -0.10 2.13 16 3 Si 0.91 18.81 29.56 -169.99 -5.03 13.78 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.54 -13.99 9.53 -35.68 -0.34 -14.33 16 8 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 9 C 0.54 14.21 7.46 -13.06 -0.10 14.11 16 10 O -0.56 -16.58 12.70 5.16 0.07 -16.51 16 11 N -0.69 -14.66 5.30 -11.19 -0.06 -14.72 16 12 C 0.24 4.68 6.27 -83.81 -0.53 4.15 16 13 C -0.19 -3.24 9.94 -39.43 -0.39 -3.63 16 14 C -0.03 -0.44 9.58 -39.22 -0.38 -0.82 16 15 C -0.19 -3.21 5.88 -104.95 -0.62 -3.82 16 16 C 0.52 8.54 7.85 34.49 0.27 8.81 16 17 O -0.52 -9.32 15.59 -19.27 -0.30 -9.62 16 18 O -0.34 -5.11 9.09 -40.65 -0.37 -5.48 16 19 C 0.12 1.49 2.71 -28.18 -0.08 1.41 16 20 H 0.09 1.18 7.15 -51.93 -0.37 0.80 16 21 C -0.17 -1.97 9.38 -35.85 -0.34 -2.31 16 22 C -0.14 -1.32 9.80 -35.85 -0.35 -1.67 16 23 C -0.10 -0.70 6.11 -28.18 -0.17 -0.87 16 24 C -0.12 -0.85 6.01 -26.51 -0.16 -1.01 16 25 C -0.12 -1.10 5.66 -26.51 -0.15 -1.25 16 26 C -0.04 -0.65 9.60 -39.21 -0.38 -1.02 16 27 C -0.15 -3.02 8.62 -39.43 -0.34 -3.36 16 28 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 29 H 0.40 7.03 8.79 -40.82 -0.36 6.68 16 30 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 31 H 0.13 1.89 7.64 -52.49 -0.40 1.49 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.08 0.78 8.12 -51.93 -0.42 0.35 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 2.06 7.60 -52.49 -0.40 1.66 16 41 H 0.15 3.35 6.39 -52.48 -0.34 3.02 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -32.09 352.04 -9.08 -41.16 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.22 Total: 10.08 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -4.13 Total: -3.46 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.60 Total: -35.26 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.60 Total: -31.61 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.09 -9.08 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733391795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.287 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds