Wall clock time and date at job start Tue Mar 31 2020 11:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86802 * 120.00171 * 2 1 4 4 H 1.48503 * 109.47025 * 274.98003 * 3 2 1 5 5 H 1.48504 * 109.47054 * 34.97930 * 3 2 1 6 6 H 1.48500 * 109.47087 * 154.97819 * 3 2 1 7 7 C 1.40125 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00334 * 173.81984 * 7 2 1 9 9 C 1.46199 * 119.99755 * 353.82286 * 7 2 1 10 10 O 1.21727 * 120.00138 * 6.08500 * 9 7 2 11 11 N 1.34776 * 120.00282 * 186.08181 * 9 7 2 12 12 C 1.39070 * 120.00238 * 185.12547 * 11 9 7 13 13 C 1.39275 * 119.93683 * 213.67667 * 12 11 9 14 14 C 1.37604 * 120.06964 * 180.23242 * 13 12 11 15 15 C 1.39833 * 119.93208 * 359.49930 * 14 13 12 16 16 C 1.47460 * 120.06670 * 180.23351 * 15 14 13 17 17 O 1.21509 * 120.00222 * 359.97438 * 16 15 14 18 18 O 1.34759 * 119.99960 * 180.02562 * 16 15 14 19 19 C 1.45200 * 116.99644 * 179.97438 * 18 16 15 20 20 H 1.08992 * 109.35934 * 329.99028 * 19 18 16 21 21 C 1.50065 * 109.36052 * 89.71884 * 19 18 16 22 22 C 1.29254 * 124.21518 * 137.48396 * 21 19 18 23 23 C 1.50067 * 124.02143 * 359.27231 * 22 21 19 24 24 C 1.53025 * 110.14609 * 17.25943 * 23 22 21 25 25 C 1.53027 * 109.35067 * 210.27027 * 19 18 16 26 26 C 1.39832 * 119.86695 * 0.24856 * 15 14 13 27 27 C 1.37614 * 119.92936 * 0.02562 * 26 15 14 28 28 H 0.96993 * 119.99631 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99819 * 5.13142 * 11 9 7 30 30 H 1.08006 * 119.96261 * 0.02562 * 13 12 11 31 31 H 1.07997 * 120.03331 * 179.77666 * 14 13 12 32 32 H 1.07995 * 117.96028 * 317.31312 * 21 19 18 33 33 H 1.08008 * 118.01568 * 179.37684 * 22 21 19 34 34 H 1.09003 * 109.35575 * 257.05090 * 23 22 21 35 35 H 1.08997 * 109.24448 * 137.40047 * 23 22 21 36 36 H 1.09000 * 109.63876 * 190.88330 * 24 23 22 37 37 H 1.09001 * 109.63944 * 70.24969 * 24 23 22 38 38 H 1.08990 * 109.64921 * 310.04030 * 25 19 18 39 39 H 1.09000 * 109.63963 * 70.46532 * 25 19 18 40 40 H 1.08001 * 120.03652 * 180.02562 * 26 15 14 41 41 H 1.08005 * 119.96128 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3827 2.1072 -1.3948 5 1 1.4945 2.6200 0.8027 6 1 3.5866 1.4120 0.5922 7 6 2.0071 -1.2135 0.0005 8 1 3.0823 -1.2163 -0.1001 9 6 1.2825 -2.4759 0.1373 10 8 0.0652 -2.4818 0.1394 11 7 1.9621 -3.6331 0.2612 12 6 1.2769 -4.8430 0.2841 13 6 1.7542 -5.8976 1.0585 14 6 1.0809 -7.0975 1.0795 15 6 -0.0893 -7.2541 0.3303 16 6 -0.8160 -8.5370 0.3546 17 8 -0.3977 -9.4596 1.0257 18 8 -1.9434 -8.6866 -0.3683 19 6 -2.6057 -9.9768 -0.2970 20 1 -1.8632 -10.7549 -0.1207 21 6 -3.5938 -9.9670 0.8325 22 6 -4.7832 -10.4679 0.7620 23 6 -5.3494 -11.1170 -0.4669 24 6 -4.2234 -11.4809 -1.4371 25 6 -3.3243 -10.2516 -1.6198 26 6 -0.5690 -6.1918 -0.4422 27 6 0.1118 -4.9961 -0.4634 28 1 -0.4849 0.8400 -0.0004 29 1 2.9293 -3.6220 0.3344 30 1 2.6556 -5.7745 1.6407 31 1 1.4536 -7.9160 1.6774 32 1 -3.2917 -9.5149 1.7656 33 1 -5.4089 -10.4149 1.6407 34 1 -6.0382 -10.4273 -0.9550 35 1 -5.8862 -12.0214 -0.1806 36 1 -4.6476 -11.7707 -2.3985 37 1 -3.6390 -12.3048 -1.0276 38 1 -3.9331 -9.3896 -1.8922 39 1 -2.5903 -10.4438 -2.4024 40 1 -1.4729 -6.3096 -1.0215 41 1 -0.2585 -4.1751 -1.0596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733391795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:39 Heat of formation + Delta-G solvation = -110.582397 kcal Electronic energy + Delta-G solvation = -24751.959645 eV Core-core repulsion = 20981.723096 eV Total energy + Delta-G solvation = -3770.236549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.79960 -40.82037 -39.35508 -38.51890 -37.06620 -35.43132 -34.58602 -32.13683 -32.04228 -31.52462 -30.56870 -28.44604 -25.55008 -23.98108 -23.77346 -23.35127 -22.38064 -21.40365 -19.58592 -19.30510 -18.90021 -18.37340 -17.89748 -17.57216 -17.06258 -16.72436 -16.17201 -15.75665 -15.52632 -15.16604 -14.84861 -14.67597 -14.52504 -14.28894 -14.24985 -13.91352 -13.71088 -13.57176 -13.46922 -13.25978 -13.13848 -12.82272 -12.72593 -12.45909 -12.21415 -12.09640 -12.03745 -11.69808 -11.56191 -11.19364 -11.00056 -10.90741 -10.14193 -10.13323 -9.85641 -8.96632 -8.40847 -6.97213 -0.29374 0.43200 1.01557 1.37329 1.41247 1.49862 1.57930 1.81539 2.19609 2.34529 2.77513 2.85968 3.51855 3.58479 3.63517 3.67341 3.87920 3.96422 3.98515 4.15613 4.27167 4.29362 4.34666 4.46098 4.53563 4.63501 4.65522 4.83438 4.96451 5.00794 5.04386 5.14248 5.21222 5.24349 5.29964 5.32183 5.37607 5.44783 5.55308 5.65633 5.76524 5.82501 6.11818 6.23177 6.68729 6.75461 7.24460 8.28275 8.52777 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.002376 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.220853 B =11781.367782 C =12442.550658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.561 4.561 8 H 0.096 0.904 9 C 0.527 3.473 10 O -0.602 6.602 11 N -0.687 5.687 12 C 0.209 3.791 13 C -0.175 4.175 14 C -0.023 4.023 15 C -0.187 4.187 16 C 0.521 3.479 17 O -0.537 6.537 18 O -0.349 6.349 19 C 0.117 3.883 20 H 0.083 0.917 21 C -0.204 4.204 22 C -0.118 4.118 23 C -0.099 4.099 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.031 4.031 27 C -0.169 4.169 28 H 0.279 0.721 29 H 0.413 0.587 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 -18.991 -2.054 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.597 4.597 8 H 0.114 0.886 9 C 0.334 3.666 10 O -0.487 6.487 11 N -0.330 5.330 12 C 0.109 3.891 13 C -0.196 4.196 14 C -0.041 4.041 15 C -0.189 4.189 16 C 0.369 3.631 17 O -0.429 6.429 18 O -0.266 6.266 19 C 0.063 3.937 20 H 0.101 0.899 21 C -0.223 4.223 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.050 4.050 27 C -0.190 4.190 28 H 0.089 0.911 29 H 0.250 0.750 30 H 0.178 0.822 31 H 0.171 0.829 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.161 0.839 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.983 -19.080 -1.890 19.810 hybrid contribution 0.644 0.977 0.369 1.227 sum -4.339 -18.103 -1.521 18.678 Atomic orbital electron populations 1.70134 1.09595 1.29529 1.34617 1.27006 0.95528 1.05045 0.91115 0.84957 0.78996 0.74851 0.79280 1.18666 1.19862 1.16922 1.21412 0.95693 0.89597 1.52969 0.88566 1.18783 0.87166 0.83657 0.76954 1.90617 1.15564 1.86658 1.55883 1.43808 1.10733 1.03801 1.74632 1.18516 0.92689 0.86572 0.91344 1.21065 1.04308 0.92568 1.01683 1.21120 0.91362 0.97106 0.94552 1.19010 0.99772 0.92178 1.07980 1.21139 0.78522 0.87712 0.75716 1.90760 1.68036 1.42574 1.41512 1.86674 1.37164 1.38798 1.63975 1.21711 0.92869 0.82462 0.96677 0.89932 1.22166 0.96966 1.04487 0.98639 1.22370 0.94555 0.96408 1.00237 1.20668 0.98240 1.01461 0.93149 1.21634 0.96176 0.96052 1.01140 1.21752 0.99493 1.00281 0.93745 1.21263 0.98075 0.90553 0.95141 1.21137 0.97932 0.97821 1.02117 0.91123 0.75012 0.82213 0.82898 0.89468 0.86130 0.89241 0.88522 0.88316 0.91264 0.90430 0.89998 0.83936 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.11 11.85 21.85 0.26 -46.85 16 2 C 0.03 1.57 5.50 85.33 0.47 2.04 16 3 Si 1.00 38.46 29.56 68.60 2.03 40.48 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.56 -29.71 9.53 24.80 0.24 -29.47 16 8 H 0.10 4.47 7.86 -2.91 -0.02 4.45 16 9 C 0.53 28.82 7.46 86.31 0.64 29.46 16 10 O -0.60 -37.95 12.70 -4.43 -0.06 -38.00 16 11 N -0.69 -29.50 5.30 -307.51 -1.63 -31.13 16 12 C 0.21 8.39 6.27 38.49 0.24 8.63 16 13 C -0.18 -5.57 9.94 22.37 0.22 -5.35 16 14 C -0.02 -0.70 9.58 22.51 0.22 -0.48 16 15 C -0.19 -6.28 5.88 -20.08 -0.12 -6.40 16 16 C 0.52 17.07 7.85 70.25 0.55 17.62 16 17 O -0.54 -18.81 15.59 19.81 0.31 -18.50 16 18 O -0.35 -10.39 9.09 -56.69 -0.52 -10.91 16 19 C 0.12 2.82 2.71 29.66 0.08 2.90 16 20 H 0.08 2.11 7.15 -2.39 -0.02 2.09 16 21 C -0.20 -4.74 9.38 27.22 0.26 -4.49 16 22 C -0.12 -2.02 9.80 27.22 0.27 -1.75 16 23 C -0.10 -1.15 6.11 29.66 0.18 -0.97 16 24 C -0.11 -1.34 6.01 30.73 0.18 -1.15 16 25 C -0.12 -2.00 5.66 30.74 0.17 -1.83 16 26 C -0.03 -1.13 9.60 22.51 0.22 -0.91 16 27 C -0.17 -7.19 8.62 22.37 0.19 -6.99 16 28 H 0.28 14.66 8.29 -92.71 -0.77 13.89 16 29 H 0.41 14.49 8.79 -92.71 -0.81 13.68 16 30 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.15 4.06 7.64 -2.91 -0.02 4.04 16 32 H 0.09 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.12 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 38 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.14 4.65 7.60 -2.91 -0.02 4.63 16 41 H 0.11 5.51 6.39 -2.91 -0.02 5.49 16 Total: -1.00 -73.09 352.04 4.66 -68.44 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.25 Total: 35.62 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 4.01 Total: 0.86 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.37 Total: -77.98 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: -0.26 Total: -67.41 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.48 kcal Total: -73.09 4.66 -68.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733391795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.146 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds