Wall clock time and date at job start Tue Mar 31 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35482 * 125.50998 * 2 1 4 4 C 1.39801 * 107.84737 * 179.97438 * 3 2 1 5 5 C 1.37997 * 106.96288 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.25844 * 180.02562 * 5 4 3 7 7 O 1.21617 * 119.99999 * 359.97438 * 6 5 4 8 8 O 1.34897 * 119.99732 * 179.97438 * 6 5 4 9 9 C 1.45201 * 117.00027 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47448 * 180.02562 * 9 8 6 11 11 C 1.38304 * 119.92502 * 269.72938 * 10 9 8 12 12 C 1.38105 * 120.06634 * 179.72406 * 11 10 9 13 13 C 1.38881 * 119.92767 * 0.56740 * 12 11 10 14 14 O 1.35752 * 120.06875 * 179.68605 * 13 12 11 15 15 C 1.34828 * 117.00133 * 174.48129 * 14 13 12 16 16 H 1.08003 * 120.00096 * 5.05658 * 15 14 13 17 17 C 1.38647 * 120.00001 * 185.05396 * 15 14 13 18 18 N 1.31557 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00044 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46954 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47189 * 120.00098 * 19 17 15 22 22 H 1.48503 * 109.47108 * 240.00096 * 19 17 15 23 23 C 1.38877 * 119.86213 * 359.69856 * 13 12 11 24 24 C 1.38099 * 119.93555 * 0.02562 * 23 13 12 25 25 N 1.34966 * 125.50557 * 179.69907 * 2 1 3 26 26 C 1.46497 * 125.63763 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.47029 * 90.02147 * 1 2 3 28 28 H 1.09000 * 109.47283 * 210.02015 * 1 2 3 29 29 H 1.09002 * 109.47483 * 330.02397 * 1 2 3 30 30 H 1.08006 * 126.07642 * 359.97438 * 3 2 1 31 31 H 1.07999 * 126.51912 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46808 * 299.99999 * 9 8 6 33 33 H 1.08996 * 109.47133 * 59.99408 * 9 8 6 34 34 H 1.07996 * 119.96828 * 359.96898 * 11 10 9 35 35 H 1.07995 * 120.03525 * 180.26596 * 12 11 10 36 36 H 0.97000 * 120.00051 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.03491 * 179.97438 * 23 13 12 38 38 H 1.07996 * 119.97150 * 179.97438 * 24 23 13 39 39 H 1.09009 * 109.46851 * 90.00230 * 26 25 2 40 40 H 1.08997 * 109.47575 * 210.00348 * 26 25 2 41 41 H 1.09008 * 109.46937 * 330.00886 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.1028 0.0000 4 6 3.6260 0.6787 0.0006 5 6 3.6091 -0.7012 0.0004 6 6 4.7797 -1.5820 0.0013 7 8 5.8989 -1.1060 0.0020 8 8 4.6163 -2.9210 0.0015 9 6 5.8206 -3.7321 0.0030 10 6 5.4436 -5.1912 0.0023 11 6 5.2748 -5.8608 1.2007 12 6 4.9238 -7.1965 1.2035 13 6 4.7518 -7.8702 0.0013 14 8 4.4130 -9.1847 0.0007 15 6 4.1500 -9.7486 -1.1955 16 1 4.2925 -9.1808 -2.1031 17 6 3.6967 -11.0572 -1.2603 18 7 3.5226 -11.7487 -0.1547 19 14 3.3330 -11.8387 -2.9176 20 1 3.6085 -10.8581 -3.9983 21 1 4.1960 -13.0330 -3.1018 22 1 1.9060 -12.2462 -2.9702 23 6 4.9274 -7.1963 -1.2003 24 6 5.2728 -5.8593 -1.1965 25 7 2.2908 -1.0987 0.0058 26 6 1.8173 -2.4850 0.0136 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5135 30 1 1.9527 2.1276 -0.0004 31 1 4.5017 1.3107 0.0011 32 1 6.4100 -3.5091 -0.8864 33 1 6.4080 -3.5086 0.8935 34 1 5.4138 -5.3376 2.1352 35 1 4.7880 -7.7177 2.1395 36 1 3.2051 -12.6641 -0.2001 37 1 4.7948 -7.7177 -2.1368 38 1 5.4099 -5.3348 -2.1306 39 1 1.6995 -2.8345 -1.0122 40 1 2.5422 -3.1137 0.5306 41 1 0.8577 -2.5383 0.5280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733425665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:20 Heat of formation + Delta-G solvation = -41.709565 kcal Electronic energy + Delta-G solvation = -24857.879579 eV Core-core repulsion = 21090.629580 eV Total energy + Delta-G solvation = -3767.249999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69779 -39.92989 -39.07977 -37.00101 -36.01724 -33.09645 -32.49641 -32.07772 -30.59547 -30.28947 -27.43106 -26.66931 -25.97765 -24.87283 -22.60473 -22.11196 -20.65248 -20.44977 -19.58690 -18.13926 -17.94962 -17.22085 -16.70516 -16.43076 -15.52266 -15.41012 -14.70313 -14.66229 -14.47720 -13.86387 -13.77063 -13.63777 -13.51672 -13.38949 -13.06241 -13.01081 -12.84360 -12.78300 -12.42187 -12.17604 -12.08196 -12.00284 -11.77511 -11.43597 -11.11790 -10.85351 -10.78976 -10.56094 -10.50912 -10.47828 -9.46232 -8.96288 -8.95084 -8.33043 -8.31986 -7.39095 -6.57409 -4.16133 1.14371 1.89033 2.09473 2.44586 2.56830 2.94634 3.06617 3.08263 3.10204 3.12486 3.86698 4.39716 4.48529 4.64965 4.75046 4.88298 4.98162 5.07311 5.11583 5.17324 5.21539 5.23534 5.27046 5.35272 5.46644 5.57762 5.60751 5.64138 5.72037 5.87480 5.99512 6.07643 6.28003 6.44920 6.54037 6.57937 6.75146 6.78740 6.91788 6.98114 7.09846 7.21712 7.30355 7.65832 7.80846 7.87418 8.87966 9.55478 10.60047 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002639 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.249427 B =10607.406398 C =11415.737679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.054 3.946 3 C -0.216 4.216 4 C -0.099 4.099 5 C -0.048 4.048 6 C 0.534 3.466 7 O -0.508 6.508 8 O -0.355 6.355 9 C 0.130 3.870 10 C -0.205 4.205 11 C -0.049 4.049 12 C -0.196 4.196 13 C 0.163 3.837 14 O -0.171 6.171 15 C -0.393 4.393 16 H 0.095 0.905 17 C 0.040 3.960 18 N -0.858 5.858 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.238 4.238 24 C -0.044 4.044 25 N -0.410 5.410 26 C 0.060 3.940 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.970 19.973 -0.315 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.239 4.239 4 C -0.125 4.125 5 C -0.158 4.158 6 C 0.380 3.620 7 O -0.397 6.397 8 O -0.272 6.272 9 C 0.058 3.942 10 C -0.206 4.206 11 C -0.067 4.067 12 C -0.215 4.215 13 C 0.108 3.892 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.492 5.492 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.257 4.257 24 C -0.063 4.063 25 N -0.085 5.085 26 C -0.081 4.081 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.789 19.223 -0.064 19.810 hybrid contribution -0.005 -0.496 -0.896 1.024 sum -4.794 18.727 -0.960 19.355 Atomic orbital electron populations 1.20440 0.87612 1.03631 1.03112 1.20525 0.94012 0.86008 1.05923 1.20638 0.92114 0.97924 1.13260 1.21298 0.97945 0.91139 1.02148 1.19482 0.81795 0.92989 1.21530 1.19812 0.87599 0.81438 0.73188 1.90872 1.24925 1.76752 1.47175 1.86736 1.39427 1.17232 1.83811 1.21719 0.83627 0.86630 1.02238 1.18862 1.15269 0.92478 0.93968 1.20516 0.96321 0.93436 0.96471 1.20199 1.10568 0.94363 0.96374 1.19439 0.91441 0.84997 0.93298 1.83979 1.73222 1.16977 1.33212 1.21419 1.45712 0.96774 0.83031 0.88814 1.25331 0.96143 0.95540 0.99447 1.70044 1.41757 1.10337 1.27087 0.85622 0.78506 0.79262 0.79918 1.19005 1.20023 1.20025 1.21143 1.10771 0.95209 0.98572 1.20623 0.95502 0.93832 0.96330 1.43915 1.04977 1.06954 1.52608 1.22378 1.02153 0.79028 1.04516 0.90485 0.91339 0.89766 0.83752 0.83265 0.91115 0.91069 0.86904 0.86216 0.91868 0.85275 0.87352 0.90052 0.87550 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.07 36.00 0.36 -0.19 16 2 C 0.05 0.52 6.85 -82.20 -0.56 -0.04 16 3 C -0.22 -2.15 10.71 -39.98 -0.43 -2.58 16 4 C -0.10 -1.19 10.66 -39.09 -0.42 -1.60 16 5 C -0.05 -0.65 6.89 -81.99 -0.56 -1.21 16 6 C 0.53 8.08 7.92 34.06 0.27 8.35 16 7 O -0.51 -8.66 16.68 -19.35 -0.32 -8.98 16 8 O -0.35 -5.28 7.64 -41.03 -0.31 -5.60 16 9 C 0.13 1.93 5.60 36.00 0.20 2.13 16 10 C -0.20 -3.44 5.52 -104.58 -0.58 -4.01 16 11 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 12 C -0.20 -3.94 9.99 -39.39 -0.39 -4.34 16 13 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 14 O -0.17 -4.71 9.76 0.05 0.00 -4.71 16 15 C -0.39 -10.60 9.49 30.88 0.29 -10.30 16 16 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 19 Si 0.94 19.82 29.55 -169.99 -5.02 14.79 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.24 -4.93 9.17 -39.40 -0.36 -5.30 16 24 C -0.04 -0.79 9.69 -39.61 -0.38 -1.17 16 25 N -0.41 -4.69 3.15 -115.77 -0.36 -5.06 16 26 C 0.06 0.59 10.33 59.85 0.62 1.21 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 6.96 -51.93 -0.36 0.01 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.07 1.01 8.08 -51.92 -0.42 0.59 16 33 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.11 1.22 6.17 -51.93 -0.32 0.90 16 41 H 0.09 0.63 6.94 -51.92 -0.36 0.27 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.58 356.58 -7.54 -39.12 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.97 Total: 4.50 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.68 Total: -15.79 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.39 Total: -28.71 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.64 Total: -19.29 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.58 -7.54 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733425665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.591 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds