Wall clock time and date at job start Tue Mar 31 2020 10:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48503 * 109.47237 * 239.99891 * 3 2 1 5 5 H 1.48498 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46913 * 119.99886 * 3 2 1 7 7 C 1.37871 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00548 * 173.70284 * 7 2 1 9 9 C 1.50706 * 119.99790 * 353.70820 * 7 2 1 10 10 C 1.53001 * 115.54627 * 86.10957 * 9 7 2 11 11 O 1.45193 * 109.47396 * 65.10766 * 10 9 7 12 12 C 1.34231 * 117.00139 * 179.97438 * 11 10 9 13 13 O 1.20828 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.53007 * 109.47132 * 180.02562 * 14 12 11 16 16 H 1.08995 * 110.45298 * 54.30027 * 15 14 12 17 17 C 1.51391 * 110.50877 * 291.69756 * 15 14 12 18 18 O 1.21288 * 126.44347 * 61.31980 * 17 15 14 19 19 N 1.34367 * 107.11565 * 241.35008 * 17 15 14 20 20 C 1.39536 * 112.24677 * 0.02562 * 19 17 15 21 21 C 1.39366 * 130.82530 * 179.97438 * 20 19 17 22 22 C 1.37935 * 120.13433 * 179.97438 * 21 20 19 23 23 C 1.38313 * 120.36920 * 0.04685 * 22 21 20 24 24 C 1.38389 * 119.82753 * 359.97438 * 23 22 21 25 25 C 1.37450 * 120.00913 * 359.88578 * 24 23 22 26 26 C 1.52999 * 117.50115 * 231.77883 * 9 7 2 27 27 C 1.53003 * 117.49899 * 300.44393 * 9 7 2 28 28 H 0.96999 * 120.00357 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47555 * 305.10350 * 10 9 7 30 30 H 1.09004 * 109.46954 * 185.10766 * 10 9 7 31 31 H 1.09003 * 109.47324 * 60.00600 * 14 12 11 32 32 H 1.08992 * 109.47554 * 299.99846 * 14 12 11 33 33 H 0.97003 * 123.88067 * 179.97438 * 19 17 15 34 34 H 1.07999 * 119.93509 * 0.02562 * 21 20 19 35 35 H 1.07995 * 119.81957 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.08404 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.04227 * 180.02562 * 24 23 22 38 38 H 1.08999 * 117.49930 * 215.00098 * 26 9 7 39 39 H 1.08997 * 117.49546 * 0.02837 * 26 9 7 40 40 H 1.08999 * 117.49781 * 359.97074 * 27 9 7 41 41 H 1.08994 * 117.49983 * 144.97215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0796 -1.1968 -0.1020 9 6 1.2580 -2.4951 0.1442 10 6 0.7195 -3.0939 -1.1568 11 8 1.8303 -3.4657 -2.0147 12 6 1.5266 -4.0104 -3.2033 13 8 0.3707 -4.1708 -3.5167 14 6 2.6272 -4.4208 -4.1474 15 6 2.0145 -5.0082 -5.4204 16 1 1.3037 -4.3081 -5.8592 17 6 1.3413 -6.3313 -5.1234 18 8 0.4098 -6.5122 -4.3679 19 7 1.9701 -7.2677 -5.8535 20 6 3.0048 -6.7321 -6.6215 21 6 3.8941 -7.3421 -7.5043 22 6 4.8469 -6.5889 -8.1581 23 6 4.9286 -5.2250 -7.9430 24 6 4.0493 -4.6123 -7.0675 25 6 3.0963 -5.3583 -6.4160 26 6 1.7341 -3.4673 1.2254 27 6 0.4253 -2.6956 1.4120 28 1 -0.4850 0.8400 0.0004 29 1 0.0979 -2.3574 -1.6659 30 1 0.1235 -3.9781 -0.9304 31 1 3.2569 -5.1701 -3.6676 32 1 3.2300 -3.5496 -4.4034 33 1 1.7327 -8.2082 -5.8470 34 1 3.8365 -8.4065 -7.6775 35 1 5.5332 -7.0668 -8.8414 36 1 5.6767 -4.6398 -8.4571 37 1 4.1097 -3.5475 -6.8973 38 1 1.6637 -4.5334 1.0100 39 1 2.5871 -3.1655 1.8332 40 1 0.4178 -1.8866 2.1424 41 1 -0.5063 -3.2538 1.3192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:23 Heat of formation + Delta-G solvation = -58.452430 kcal Electronic energy + Delta-G solvation = -25554.475045 eV Core-core repulsion = 21786.499021 eV Total energy + Delta-G solvation = -3767.976024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82222 -39.58669 -38.49297 -36.75247 -35.79520 -35.18225 -33.69993 -31.93502 -30.58145 -29.38243 -27.31395 -25.97736 -25.05182 -22.87997 -21.73705 -21.46560 -21.07238 -19.81304 -19.20824 -18.10040 -17.30651 -16.74242 -16.51888 -16.17331 -15.97002 -15.45161 -15.02597 -14.77289 -14.57564 -14.30131 -14.06889 -13.72456 -13.36886 -13.20169 -13.01868 -12.66839 -12.31251 -12.16115 -11.90498 -11.66952 -11.54819 -11.16935 -11.03831 -10.95470 -10.82954 -10.53439 -10.24939 -10.12271 -9.85437 -9.75570 -9.50743 -9.19721 -8.78979 -8.44162 -8.28625 -8.17095 -6.04353 -4.09895 0.88390 1.00930 2.37314 2.78387 2.87797 3.29144 3.31968 3.36195 3.38479 3.51163 3.90349 4.20935 4.40574 4.52481 4.65453 4.74868 4.97766 5.01749 5.11008 5.22182 5.26654 5.33157 5.46776 5.61900 5.62701 5.70207 5.81177 6.05844 6.07794 6.18322 6.30882 6.36223 6.39179 6.58990 6.59365 6.70610 6.74857 6.77385 7.07061 7.34433 7.40725 7.52941 7.88204 7.89799 8.40072 8.53431 8.91462 9.55642 11.04978 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.003206 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.411209 B = 8732.114100 C = 9684.850130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.118 3.882 11 O -0.339 6.339 12 C 0.443 3.557 13 O -0.497 6.497 14 C -0.091 4.091 15 C -0.070 4.070 16 H 0.133 0.867 17 C 0.527 3.473 18 O -0.462 6.462 19 N -0.667 5.667 20 C 0.150 3.850 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.060 4.060 25 C -0.137 4.137 26 C -0.206 4.206 27 C -0.145 4.145 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.411 0.589 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.923 -12.940 -16.631 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.045 3.955 11 O -0.255 6.255 12 C 0.285 3.715 13 O -0.385 6.385 14 C -0.129 4.129 15 C -0.091 4.091 16 H 0.151 0.849 17 C 0.313 3.687 18 O -0.332 6.332 19 N -0.311 5.311 20 C 0.053 3.947 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.162 4.162 24 C -0.078 4.078 25 C -0.140 4.140 26 C -0.243 4.243 27 C -0.182 4.182 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.249 0.751 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.770 -12.825 -16.151 22.411 hybrid contribution 0.105 0.367 -0.059 0.386 sum 8.875 -12.458 -16.209 22.287 Atomic orbital electron populations 1.69994 1.05908 1.26785 1.49081 1.25017 0.94846 0.99050 0.94546 0.86650 0.79626 0.82945 0.78734 1.20132 1.21303 1.20159 1.20350 0.93051 0.88369 1.51031 0.91923 1.18777 0.98906 0.94141 0.84429 1.22867 0.85392 0.96873 0.90387 1.86484 1.41429 1.70804 1.26784 1.23225 0.89902 0.75707 0.82706 1.90707 1.21546 1.50379 1.75845 1.21048 0.96677 1.03591 0.91596 1.20503 0.96423 0.97289 0.94899 0.84907 1.20498 0.82461 0.86521 0.79194 1.90914 1.25277 1.83270 1.33697 1.43867 1.32318 1.11937 1.43026 1.18276 0.90044 0.92811 0.93617 1.20353 0.96873 1.00225 0.99106 1.20888 0.97052 0.94010 0.98321 1.21073 1.00305 0.94865 1.00002 1.20304 0.92824 1.00106 0.94568 1.19767 0.99611 0.93142 1.01519 1.23010 0.98534 0.95747 1.07038 1.22532 0.92305 1.01187 1.02208 0.92859 0.90700 0.94347 0.87780 0.86297 0.75064 0.85702 0.85298 0.85250 0.85009 0.91592 0.90096 0.89431 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 12.88 55.43 0.71 -24.40 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -13.49 8.77 -34.44 -0.30 -13.79 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.97 1.62 -155.66 -0.25 0.71 16 10 C 0.12 2.91 5.29 37.16 0.20 3.11 16 11 O -0.34 -7.63 10.16 -39.26 -0.40 -8.03 16 12 C 0.44 8.69 7.65 36.01 0.28 8.96 16 13 O -0.50 -11.10 13.54 -26.09 -0.35 -11.46 16 14 C -0.09 -1.24 5.34 -27.88 -0.15 -1.39 16 15 C -0.07 -0.89 2.60 -92.37 -0.24 -1.13 16 16 H 0.13 1.73 7.96 -51.93 -0.41 1.31 16 17 C 0.53 7.61 7.82 -10.83 -0.08 7.53 16 18 O -0.46 -8.78 15.75 -16.51 -0.26 -9.04 16 19 N -0.67 -7.00 5.88 -9.62 -0.06 -7.06 16 20 C 0.15 1.43 7.12 -83.57 -0.59 0.84 16 21 C -0.14 -1.05 10.07 -39.27 -0.40 -1.45 16 22 C -0.08 -0.53 10.02 -39.66 -0.40 -0.93 16 23 C -0.14 -0.96 10.07 -39.50 -0.40 -1.36 16 24 C -0.06 -0.48 10.02 -39.81 -0.40 -0.88 16 25 C -0.14 -1.38 5.69 -104.34 -0.59 -1.97 16 26 C -0.21 -4.63 9.96 -26.69 -0.27 -4.90 16 27 C -0.14 -3.46 9.37 -26.69 -0.25 -3.71 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.07 2.02 8.13 -51.93 -0.42 1.60 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.41 3.34 8.96 -40.82 -0.37 2.98 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 41 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -33.89 356.21 -9.35 -43.24 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.39 Total: 3.94 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.95 Total: -8.58 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.66 Total: -31.46 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -1.01 Total: -28.53 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.89 -9.35 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.216 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds