Wall clock time and date at job start Tue Mar 31 2020 10:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48503 * 109.47237 * 239.99891 * 3 2 1 5 5 H 1.48498 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46913 * 119.99886 * 3 2 1 7 7 C 1.37871 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00548 * 173.70284 * 7 2 1 9 9 C 1.50706 * 119.99790 * 353.70820 * 7 2 1 10 10 C 1.53001 * 115.54627 * 86.10957 * 9 7 2 11 11 O 1.45193 * 109.47396 * 65.10766 * 10 9 7 12 12 C 1.34231 * 117.00139 * 179.97438 * 11 10 9 13 13 O 1.20828 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.53007 * 109.47132 * 180.02562 * 14 12 11 16 16 H 1.08995 * 110.45298 * 54.30027 * 15 14 12 17 17 C 1.51391 * 110.50877 * 291.69756 * 15 14 12 18 18 O 1.21288 * 126.44347 * 61.31980 * 17 15 14 19 19 N 1.34367 * 107.11565 * 241.35008 * 17 15 14 20 20 C 1.39536 * 112.24677 * 0.02562 * 19 17 15 21 21 C 1.39366 * 130.82530 * 179.97438 * 20 19 17 22 22 C 1.37935 * 120.13433 * 179.97438 * 21 20 19 23 23 C 1.38313 * 120.36920 * 0.04685 * 22 21 20 24 24 C 1.38389 * 119.82753 * 359.97438 * 23 22 21 25 25 C 1.37450 * 120.00913 * 359.88578 * 24 23 22 26 26 C 1.52999 * 117.50115 * 231.77883 * 9 7 2 27 27 C 1.53003 * 117.49899 * 300.44393 * 9 7 2 28 28 H 0.96999 * 120.00357 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47555 * 305.10350 * 10 9 7 30 30 H 1.09004 * 109.46954 * 185.10766 * 10 9 7 31 31 H 1.09003 * 109.47324 * 60.00600 * 14 12 11 32 32 H 1.08992 * 109.47554 * 299.99846 * 14 12 11 33 33 H 0.97003 * 123.88067 * 179.97438 * 19 17 15 34 34 H 1.07999 * 119.93509 * 0.02562 * 21 20 19 35 35 H 1.07995 * 119.81957 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.08404 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.04227 * 180.02562 * 24 23 22 38 38 H 1.08999 * 117.49930 * 215.00098 * 26 9 7 39 39 H 1.08997 * 117.49546 * 0.02837 * 26 9 7 40 40 H 1.08999 * 117.49781 * 359.97074 * 27 9 7 41 41 H 1.08994 * 117.49983 * 144.97215 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0796 -1.1968 -0.1020 9 6 1.2580 -2.4951 0.1442 10 6 0.7195 -3.0939 -1.1568 11 8 1.8303 -3.4657 -2.0147 12 6 1.5266 -4.0104 -3.2033 13 8 0.3707 -4.1708 -3.5167 14 6 2.6272 -4.4208 -4.1474 15 6 2.0145 -5.0082 -5.4204 16 1 1.3037 -4.3081 -5.8592 17 6 1.3413 -6.3313 -5.1234 18 8 0.4098 -6.5122 -4.3679 19 7 1.9701 -7.2677 -5.8535 20 6 3.0048 -6.7321 -6.6215 21 6 3.8941 -7.3421 -7.5043 22 6 4.8469 -6.5889 -8.1581 23 6 4.9286 -5.2250 -7.9430 24 6 4.0493 -4.6123 -7.0675 25 6 3.0963 -5.3583 -6.4160 26 6 1.7341 -3.4673 1.2254 27 6 0.4253 -2.6956 1.4120 28 1 -0.4850 0.8400 0.0004 29 1 0.0979 -2.3574 -1.6659 30 1 0.1235 -3.9781 -0.9304 31 1 3.2569 -5.1701 -3.6676 32 1 3.2300 -3.5496 -4.4034 33 1 1.7327 -8.2082 -5.8470 34 1 3.8365 -8.4065 -7.6775 35 1 5.5332 -7.0668 -8.8414 36 1 5.6767 -4.6398 -8.4571 37 1 4.1097 -3.5475 -6.8973 38 1 1.6637 -4.5334 1.0100 39 1 2.5871 -3.1655 1.8332 40 1 0.4178 -1.8866 2.1424 41 1 -0.5063 -3.2538 1.3192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:23 Heat of formation + Delta-G solvation = -77.778234 kcal Electronic energy + Delta-G solvation = -25555.313075 eV Core-core repulsion = 21786.499021 eV Total energy + Delta-G solvation = -3768.814053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73436 -41.18355 -39.42385 -38.59887 -36.94650 -36.67364 -34.71160 -34.02276 -31.34433 -30.15625 -28.87919 -27.58409 -26.80489 -23.54220 -23.08034 -22.61280 -22.41163 -21.20039 -21.10060 -18.93724 -18.55351 -18.39959 -17.90693 -17.56908 -17.12373 -16.74634 -16.52631 -16.38007 -15.74939 -15.48525 -15.13166 -14.86677 -14.75560 -14.17656 -14.10756 -13.95443 -13.67948 -13.60663 -13.41518 -13.07543 -12.90112 -12.77584 -12.62769 -12.39636 -12.11756 -11.84835 -11.80819 -11.70007 -11.63988 -11.37644 -11.09061 -10.78898 -10.49179 -10.10632 -9.80997 -9.00322 -8.12848 -6.25329 0.17701 0.42764 1.30904 1.38523 1.44061 1.45725 1.53510 1.81210 1.95592 2.43546 2.87874 3.01454 3.15240 3.23590 3.45454 3.60830 3.87735 3.95896 4.09581 4.13710 4.23986 4.36978 4.42861 4.45813 4.48206 4.54060 4.64736 4.64980 4.77950 4.84002 4.93432 5.08914 5.15385 5.18003 5.44264 5.50780 5.55380 5.61547 5.66738 5.73696 5.75442 5.80263 6.10350 6.35369 6.80090 6.86220 6.94136 7.43677 8.96055 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.003206 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.411209 B = 8732.114100 C = 9684.850130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.007 3.993 10 C 0.132 3.868 11 O -0.349 6.349 12 C 0.436 3.564 13 O -0.528 6.528 14 C -0.079 4.079 15 C -0.068 4.068 16 H 0.122 0.878 17 C 0.519 3.481 18 O -0.523 6.523 19 N -0.653 5.653 20 C 0.126 3.874 21 C -0.138 4.138 22 C -0.080 4.080 23 C -0.137 4.137 24 C -0.067 4.067 25 C -0.148 4.148 26 C -0.178 4.178 27 C -0.148 4.148 28 H 0.261 0.739 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.421 0.579 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -13.474 -18.545 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.006 3.994 10 C 0.058 3.942 11 O -0.265 6.265 12 C 0.279 3.721 13 O -0.417 6.417 14 C -0.116 4.116 15 C -0.089 4.089 16 H 0.140 0.860 17 C 0.306 3.694 18 O -0.398 6.398 19 N -0.297 5.297 20 C 0.030 3.970 21 C -0.159 4.159 22 C -0.099 4.099 23 C -0.155 4.155 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.215 4.215 27 C -0.185 4.185 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.261 0.739 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.181 -13.388 -18.113 25.607 hybrid contribution -0.850 0.458 0.382 1.038 sum 11.331 -12.931 -17.731 24.698 Atomic orbital electron populations 1.70122 1.07342 1.27452 1.50011 1.25785 0.95607 1.02380 0.94132 0.85634 0.78396 0.78657 0.79121 1.19328 1.21187 1.19301 1.20612 0.93053 0.89610 1.51066 0.92290 1.18886 1.00424 0.94858 0.85221 1.22440 0.85661 0.95694 0.90415 1.86490 1.40510 1.71466 1.27994 1.24435 0.91169 0.74310 0.82167 1.90695 1.23483 1.51408 1.76159 1.21191 0.94772 1.05147 0.90503 1.20407 0.97253 0.96139 0.95114 0.86045 1.20784 0.81919 0.87903 0.78758 1.90873 1.27981 1.84344 1.36583 1.43659 1.31992 1.11968 1.42095 1.18513 0.90717 0.92824 0.94949 1.20700 0.95867 1.01559 0.97733 1.21329 0.96705 0.93954 0.97886 1.21463 0.99838 0.95398 0.98826 1.20558 0.92516 1.00827 0.94602 1.19637 0.99853 0.93689 1.01893 1.23015 0.97699 0.96241 1.04593 1.22467 0.93508 1.01321 1.01225 0.92997 0.94264 0.94461 0.86044 0.83335 0.73930 0.83497 0.82174 0.82640 0.83759 0.89588 0.89226 0.90908 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.19 12.88 21.44 0.28 -52.91 16 2 C 0.02 1.17 5.38 84.65 0.46 1.63 16 3 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.51 -28.10 8.77 25.60 0.22 -27.87 16 8 H 0.06 3.23 7.82 -2.91 -0.02 3.21 16 9 C 0.01 0.34 1.62 -52.93 -0.09 0.25 16 10 C 0.13 6.75 5.29 71.98 0.38 7.13 16 11 O -0.35 -16.02 10.16 -51.42 -0.52 -16.55 16 12 C 0.44 17.57 7.65 71.24 0.54 18.12 16 13 O -0.53 -24.89 13.54 28.97 0.39 -24.50 16 14 C -0.08 -2.11 5.34 29.85 0.16 -1.95 16 15 C -0.07 -1.72 2.60 -11.93 -0.03 -1.75 16 16 H 0.12 3.30 7.96 -2.39 -0.02 3.28 16 17 C 0.52 15.47 7.82 87.94 0.69 16.16 16 18 O -0.52 -21.11 15.75 18.04 0.28 -20.82 16 19 N -0.65 -13.45 5.88 -302.98 -1.78 -15.24 16 20 C 0.13 2.17 7.12 38.42 0.27 2.44 16 21 C -0.14 -1.53 10.07 22.47 0.23 -1.30 16 22 C -0.08 -0.65 10.02 22.22 0.22 -0.43 16 23 C -0.14 -1.25 10.07 22.32 0.22 -1.03 16 24 C -0.07 -0.89 10.02 22.12 0.22 -0.67 16 25 C -0.15 -2.72 5.69 -19.68 -0.11 -2.83 16 26 C -0.18 -7.89 9.96 30.62 0.30 -7.58 16 27 C -0.15 -7.15 9.37 30.62 0.29 -6.86 16 28 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.04 2.24 8.13 -2.39 -0.02 2.22 16 30 H 0.04 1.86 8.08 -2.38 -0.02 1.85 16 31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.42 6.69 8.96 -92.71 -0.83 5.86 16 34 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 40 H 0.07 3.70 8.14 -2.39 -0.02 3.68 16 41 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -76.60 356.21 4.89 -71.72 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.23 Total: 19.53 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 3.98 Total: -6.54 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -1.51 Total: -68.15 kcal Atomic # 8 Polarization: -62.02 SS G_CDS: 0.15 Total: -61.87 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.60 4.89 -71.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.062 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds