Wall clock time and date at job start Tue Mar 31 2020 10:42:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31418 * 1
3 3 Si 1.86799 * 119.99968 * 2 1
4 4 H 1.48496 * 109.47394 * 270.00195 * 3 2 1
5 5 H 1.48507 * 109.46828 * 30.00045 * 3 2 1
6 6 H 1.48495 * 109.47159 * 149.99379 * 3 2 1
7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1
9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1
10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7
12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7
13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9
14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10
15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12
16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12
17 17 H 1.09003 * 115.56008 * 325.57942 * 16 14 13
18 18 C 1.53122 * 117.52134 * 111.32805 * 16 14 13
19 19 C 1.52404 * 117.51854 * 179.83521 * 16 14 13
20 20 C 1.53788 * 121.12708 * 141.91403 * 19 16 14
21 21 C 1.54475 * 102.20146 * 241.92976 * 20 19 16
22 22 C 1.51421 * 105.23290 * 334.23721 * 21 20 19
23 23 C 1.38465 * 130.36520 * 196.83186 * 22 21 20
24 24 C 1.38100 * 120.26471 * 180.12763 * 23 22 21
25 25 C 1.38251 * 119.91127 * 0.02562 * 24 23 22
26 26 C 1.38077 * 119.94278 * 359.96111 * 25 24 23
27 27 C 1.38386 * 109.79375 * 16.92281 * 22 21 20
28 28 H 0.97002 * 120.00132 * 359.97438 * 1 2 3
29 29 H 0.96996 * 120.00211 * 0.02562 * 9 7 2
30 30 H 1.09000 * 109.47247 * 60.00371 * 12 10 9
31 31 H 1.09001 * 109.47358 * 299.99798 * 12 10 9
32 32 H 1.08996 * 117.51869 * 214.88940 * 18 16 14
33 33 H 1.09000 * 117.51208 * 359.97438 * 18 16 14
34 34 H 1.09002 * 110.85258 * 0.10162 * 20 19 16
35 35 H 1.08994 * 110.85712 * 123.75052 * 20 19 16
36 36 H 1.09003 * 110.28956 * 215.30299 * 21 20 19
37 37 H 1.08995 * 110.29472 * 93.18537 * 21 20 19
38 38 H 1.08000 * 119.86850 * 0.15104 * 23 22 21
39 39 H 1.07998 * 120.04341 * 180.02562 * 24 23 22
40 40 H 1.08005 * 120.03067 * 179.97438 * 25 24 23
41 41 H 1.07999 * 119.86803 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 2.4956 2.0465 -1.4000
5 1 1.4455 2.6527 0.7001
6 1 3.5456 1.4402 0.7001
7 6 2.0089 -1.2033 0.0005
8 1 1.4689 -2.1387 0.0014
9 7 3.3799 -1.2033 0.0000
10 6 4.0538 -2.3705 0.0011
11 8 3.4474 -3.4209 0.0020
12 6 5.5608 -2.3704 0.0011
13 8 6.0448 -3.7394 0.0017
14 6 7.3755 -3.9153 0.0023
15 8 8.1116 -2.9570 0.0018
16 6 7.9516 -5.3078 0.0024
17 1 7.3815 -6.0525 0.5578
18 6 8.6790 -5.7726 -1.2623
19 6 9.4697 -5.4418 -0.0008
20 6 10.1723 -6.5431 0.8107
21 6 11.0267 -5.7230 1.8026
22 6 11.2699 -4.3958 1.1153
23 6 12.2031 -3.4073 1.3786
24 6 12.2385 -2.2610 0.6093
25 6 11.3387 -2.0985 -0.4276
26 6 10.4073 -3.0828 -0.6925
27 6 10.3698 -4.2340 0.0767
28 1 -0.4850 0.8401 0.0004
29 1 3.8648 -0.3633 -0.0004
30 1 5.9241 -1.8558 0.8906
31 1 5.9242 -1.8574 -0.8894
32 1 8.5879 -6.8231 -1.5383
33 1 8.7405 -5.0712 -2.0944
34 1 9.4451 -7.1579 1.3412
35 1 10.8045 -7.1554 0.1679
36 1 11.9732 -6.2286 1.9939
37 1 10.4829 -5.5719 2.7350
38 1 12.9063 -3.5335 2.1885
39 1 12.9682 -1.4925 0.8176
40 1 11.3645 -1.2025 -1.0302
41 1 9.7047 -2.9544 -1.5026
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000745729692.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:28
Heat of formation + Delta-G solvation = -55.972332 kcal
Electronic energy + Delta-G solvation = -25378.505949 eV
Core-core repulsion = 21610.637470 eV
Total energy + Delta-G solvation = -3767.868479 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.19127 -39.84460 -38.34286 -37.27875 -36.03744 -34.05672 -34.00594 -31.79745
-30.76961 -29.07919 -28.77747 -25.75160 -24.72484 -23.90484 -22.79628 -21.16738
-20.85938 -19.64945 -19.37750 -18.57155 -17.73391 -16.86101 -16.37093 -15.89184
-15.69023 -15.39116 -15.04135 -14.98562 -14.79872 -14.37518 -13.86893 -13.83411
-13.29045 -13.09928 -12.88823 -12.60274 -12.52069 -12.38303 -12.20595 -12.03355
-11.98805 -11.80610 -11.28731 -11.26619 -10.87062 -10.71029 -10.65878 -10.64524
-10.46751 -10.31030 -10.04846 -9.67439 -8.69762 -8.66214 -8.45163 -8.29057
-6.39135 -3.91970 1.22299 1.40245 2.15330 2.56975 2.98860 3.03281
3.11892 3.40913 3.56242 3.84811 4.03575 4.09068 4.24466 4.26492
4.41785 4.51682 4.74548 4.96419 4.99778 5.00522 5.11382 5.13303
5.16348 5.26711 5.34727 5.41010 5.42822 5.53863 5.55643 5.59987
5.63301 5.68877 5.74872 5.80234 5.93281 6.10075 6.40755 6.49633
6.57348 6.61642 6.96527 7.45292 7.86983 8.01435 8.48304 8.83943
9.30159 9.66177 10.73215
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.020300 B = 0.002921 C = 0.002657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1378.992712 B = 9584.179141 C =10535.957556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.875 5.875
2 C 0.045 3.955
3 Si 0.879 3.121
4 H -0.269 1.269
5 H -0.274 1.274
6 H -0.268 1.268
7 C -0.308 4.308
8 H 0.122 0.878
9 N -0.580 5.580
10 C 0.448 3.552
11 O -0.557 6.557
12 C 0.060 3.940
13 O -0.322 6.322
14 C 0.483 3.517
15 O -0.499 6.499
16 C -0.143 4.143
17 H 0.141 0.859
18 C -0.131 4.131
19 C -0.058 4.058
20 C -0.084 4.084
21 C -0.080 4.080
22 C -0.093 4.093
23 C -0.121 4.121
24 C -0.115 4.115
25 C -0.131 4.131
26 C -0.047 4.047
27 C -0.059 4.059
28 H 0.275 0.725
29 H 0.373 0.627
30 H 0.087 0.913
31 H 0.086 0.914
32 H 0.117 0.883
33 H 0.104 0.896
34 H 0.082 0.918
35 H 0.084 0.916
36 H 0.076 0.924
37 H 0.081 0.919
38 H 0.116 0.884
39 H 0.119 0.881
40 H 0.120 0.880
41 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.122 -8.430 0.315 27.450
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.515 5.515
2 C -0.159 4.159
3 Si 0.705 3.295
4 H -0.194 1.194
5 H -0.199 1.199
6 H -0.194 1.194
7 C -0.436 4.436
8 H 0.140 0.860
9 N -0.220 5.220
10 C 0.233 3.767
11 O -0.438 6.438
12 C -0.018 4.018
13 O -0.236 6.236
14 C 0.326 3.674
15 O -0.387 6.387
16 C -0.162 4.162
17 H 0.159 0.841
18 C -0.168 4.168
19 C -0.058 4.058
20 C -0.121 4.121
21 C -0.117 4.117
22 C -0.093 4.093
23 C -0.139 4.139
24 C -0.133 4.133
25 C -0.149 4.149
26 C -0.065 4.065
27 C -0.059 4.059
28 H 0.086 0.914
29 H 0.206 0.794
30 H 0.105 0.895
31 H 0.105 0.895
32 H 0.135 0.865
33 H 0.123 0.877
34 H 0.101 0.899
35 H 0.103 0.897
36 H 0.095 0.905
37 H 0.099 0.901
38 H 0.134 0.866
39 H 0.138 0.862
40 H 0.138 0.862
41 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 25.673 -8.716 0.322 27.114
hybrid contribution 0.368 1.810 0.087 1.849
sum 26.041 -6.906 0.409 26.944
Atomic orbital electron populations
1.69617 1.05644 1.27747 1.48459 1.25034 0.95517 0.98044 0.97286
0.86681 0.79869 0.83885 0.79089 1.19403 1.19929 1.19373 1.19428
0.78688 0.96877 1.48631 0.86012 1.42037 1.07631 1.05704 1.66640
1.19210 0.86971 0.85120 0.85418 1.90605 1.69059 1.30723 1.53455
1.22722 0.95053 0.80584 1.03446 1.86546 1.23134 1.31040 1.82880
1.22641 0.80951 0.91015 0.72771 1.90707 1.59934 1.42666 1.45431
1.21807 0.94214 0.94155 1.06046 0.84083 1.23088 0.99603 1.03312
0.90770 1.20449 0.89027 0.95733 1.00608 1.21865 0.98272 0.95296
0.96677 1.21042 1.00188 0.92143 0.98320 1.20475 0.95995 0.96261
0.96568 1.20472 0.99137 0.93801 1.00464 1.20990 0.99195 0.97256
0.95890 1.20979 0.96198 0.99046 0.98721 1.20495 0.95563 0.91843
0.98630 1.19397 0.95546 0.94223 0.96779 0.91393 0.79408 0.89518
0.89546 0.86505 0.87713 0.89947 0.89741 0.90517 0.90098 0.86598
0.86248 0.86218 0.86619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.27 13.96 55.50 0.77 -24.50 16
2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16
3 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16
4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16
7 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16
8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16
9 N -0.58 -13.91 5.09 -10.96 -0.06 -13.97 16
10 C 0.45 10.51 7.86 -10.99 -0.09 10.42 16
11 O -0.56 -15.48 16.08 -14.12 -0.23 -15.70 16
12 C 0.06 1.09 5.94 36.01 0.21 1.30 16
13 O -0.32 -5.87 9.75 -45.89 -0.45 -6.31 16
14 C 0.48 7.40 7.74 36.00 0.28 7.68 16
15 O -0.50 -8.10 11.56 -18.76 -0.22 -8.32 16
16 C -0.14 -1.65 6.15 -92.02 -0.57 -2.21 16
17 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16
18 C -0.13 -1.19 9.95 -26.92 -0.27 -1.46 16
19 C -0.06 -0.59 2.34 -155.74 -0.36 -0.95 16
20 C -0.08 -0.63 6.85 -25.55 -0.18 -0.80 16
21 C -0.08 -0.66 6.77 -26.75 -0.18 -0.84 16
22 C -0.09 -1.02 6.14 -104.13 -0.64 -1.66 16
23 C -0.12 -1.26 10.04 -39.55 -0.40 -1.65 16
24 C -0.12 -1.20 10.05 -39.63 -0.40 -1.60 16
25 C -0.13 -1.51 10.04 -39.64 -0.40 -1.90 16
26 C -0.05 -0.60 7.46 -39.54 -0.29 -0.89 16
27 C -0.06 -0.72 4.86 -104.41 -0.51 -1.22 16
28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16
29 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16
30 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16
31 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16
32 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16
35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16
39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16
40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16
41 H 0.12 1.48 7.22 -52.49 -0.38 1.10 16
LS Contribution 348.86 15.07 5.26 5.26
Total: -1.00 -34.27 348.86 -8.90 -43.18
By element:
Atomic # 1 Polarization: 14.64 SS G_CDS: -5.24 Total: 9.40 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -4.03 Total: -3.49 kcal
Atomic # 7 Polarization: -39.18 SS G_CDS: 0.72 Total: -38.47 kcal
Atomic # 8 Polarization: -29.45 SS G_CDS: -0.89 Total: -30.34 kcal
Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -34.27 -8.90 -43.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000745729692.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.796 kcal
(2) G-P(sol) polarization free energy of solvation -34.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds