Wall clock time and date at job start Tue Mar 31 2020 10:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48496 * 109.47394 * 270.00195 * 3 2 1 5 5 H 1.48507 * 109.46828 * 30.00045 * 3 2 1 6 6 H 1.48495 * 109.47159 * 149.99379 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 H 1.09003 * 115.56008 * 325.57942 * 16 14 13 18 18 C 1.53122 * 117.52134 * 111.32805 * 16 14 13 19 19 C 1.52404 * 117.51854 * 179.83521 * 16 14 13 20 20 C 1.53788 * 121.12708 * 141.91403 * 19 16 14 21 21 C 1.54475 * 102.20146 * 241.92976 * 20 19 16 22 22 C 1.51421 * 105.23290 * 334.23721 * 21 20 19 23 23 C 1.38465 * 130.36520 * 196.83186 * 22 21 20 24 24 C 1.38100 * 120.26471 * 180.12763 * 23 22 21 25 25 C 1.38251 * 119.91127 * 0.02562 * 24 23 22 26 26 C 1.38077 * 119.94278 * 359.96111 * 25 24 23 27 27 C 1.38386 * 109.79375 * 16.92281 * 22 21 20 28 28 H 0.97002 * 120.00132 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 31 31 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 32 32 H 1.08996 * 117.51869 * 214.88940 * 18 16 14 33 33 H 1.09000 * 117.51208 * 359.97438 * 18 16 14 34 34 H 1.09002 * 110.85258 * 0.10162 * 20 19 16 35 35 H 1.08994 * 110.85712 * 123.75052 * 20 19 16 36 36 H 1.09003 * 110.28956 * 215.30299 * 21 20 19 37 37 H 1.08995 * 110.29472 * 93.18537 * 21 20 19 38 38 H 1.08000 * 119.86850 * 0.15104 * 23 22 21 39 39 H 1.07998 * 120.04341 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.03067 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.86803 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7394 0.0017 14 6 7.3755 -3.9153 0.0023 15 8 8.1116 -2.9570 0.0018 16 6 7.9516 -5.3078 0.0024 17 1 7.3815 -6.0525 0.5578 18 6 8.6790 -5.7726 -1.2623 19 6 9.4697 -5.4418 -0.0008 20 6 10.1723 -6.5431 0.8107 21 6 11.0267 -5.7230 1.8026 22 6 11.2699 -4.3958 1.1153 23 6 12.2031 -3.4073 1.3786 24 6 12.2385 -2.2610 0.6093 25 6 11.3387 -2.0985 -0.4276 26 6 10.4073 -3.0828 -0.6925 27 6 10.3698 -4.2340 0.0767 28 1 -0.4850 0.8401 0.0004 29 1 3.8648 -0.3633 -0.0004 30 1 5.9241 -1.8558 0.8906 31 1 5.9242 -1.8574 -0.8894 32 1 8.5879 -6.8231 -1.5383 33 1 8.7405 -5.0712 -2.0944 34 1 9.4451 -7.1579 1.3412 35 1 10.8045 -7.1554 0.1679 36 1 11.9732 -6.2286 1.9939 37 1 10.4829 -5.5719 2.7350 38 1 12.9063 -3.5335 2.1885 39 1 12.9682 -1.4925 0.8176 40 1 11.3645 -1.2025 -1.0302 41 1 9.7047 -2.9544 -1.5026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745729692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:28 Heat of formation + Delta-G solvation = -55.972332 kcal Electronic energy + Delta-G solvation = -25378.505949 eV Core-core repulsion = 21610.637470 eV Total energy + Delta-G solvation = -3767.868479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19127 -39.84460 -38.34286 -37.27875 -36.03744 -34.05672 -34.00594 -31.79745 -30.76961 -29.07919 -28.77747 -25.75160 -24.72484 -23.90484 -22.79628 -21.16738 -20.85938 -19.64945 -19.37750 -18.57155 -17.73391 -16.86101 -16.37093 -15.89184 -15.69023 -15.39116 -15.04135 -14.98562 -14.79872 -14.37518 -13.86893 -13.83411 -13.29045 -13.09928 -12.88823 -12.60274 -12.52069 -12.38303 -12.20595 -12.03355 -11.98805 -11.80610 -11.28731 -11.26619 -10.87062 -10.71029 -10.65878 -10.64524 -10.46751 -10.31030 -10.04846 -9.67439 -8.69762 -8.66214 -8.45163 -8.29057 -6.39135 -3.91970 1.22299 1.40245 2.15330 2.56975 2.98860 3.03281 3.11892 3.40913 3.56242 3.84811 4.03575 4.09068 4.24466 4.26492 4.41785 4.51682 4.74548 4.96419 4.99778 5.00522 5.11382 5.13303 5.16348 5.26711 5.34727 5.41010 5.42822 5.53863 5.55643 5.59987 5.63301 5.68877 5.74872 5.80234 5.93281 6.10075 6.40755 6.49633 6.57348 6.61642 6.96527 7.45292 7.86983 8.01435 8.48304 8.83943 9.30159 9.66177 10.73215 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.002921 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.992712 B = 9584.179141 C =10535.957556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.448 3.552 11 O -0.557 6.557 12 C 0.060 3.940 13 O -0.322 6.322 14 C 0.483 3.517 15 O -0.499 6.499 16 C -0.143 4.143 17 H 0.141 0.859 18 C -0.131 4.131 19 C -0.058 4.058 20 C -0.084 4.084 21 C -0.080 4.080 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.047 4.047 27 C -0.059 4.059 28 H 0.275 0.725 29 H 0.373 0.627 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.122 -8.430 0.315 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.438 6.438 12 C -0.018 4.018 13 O -0.236 6.236 14 C 0.326 3.674 15 O -0.387 6.387 16 C -0.162 4.162 17 H 0.159 0.841 18 C -0.168 4.168 19 C -0.058 4.058 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.093 4.093 23 C -0.139 4.139 24 C -0.133 4.133 25 C -0.149 4.149 26 C -0.065 4.065 27 C -0.059 4.059 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 25.673 -8.716 0.322 27.114 hybrid contribution 0.368 1.810 0.087 1.849 sum 26.041 -6.906 0.409 26.944 Atomic orbital electron populations 1.69617 1.05644 1.27747 1.48459 1.25034 0.95517 0.98044 0.97286 0.86681 0.79869 0.83885 0.79089 1.19403 1.19929 1.19373 1.19428 0.78688 0.96877 1.48631 0.86012 1.42037 1.07631 1.05704 1.66640 1.19210 0.86971 0.85120 0.85418 1.90605 1.69059 1.30723 1.53455 1.22722 0.95053 0.80584 1.03446 1.86546 1.23134 1.31040 1.82880 1.22641 0.80951 0.91015 0.72771 1.90707 1.59934 1.42666 1.45431 1.21807 0.94214 0.94155 1.06046 0.84083 1.23088 0.99603 1.03312 0.90770 1.20449 0.89027 0.95733 1.00608 1.21865 0.98272 0.95296 0.96677 1.21042 1.00188 0.92143 0.98320 1.20475 0.95995 0.96261 0.96568 1.20472 0.99137 0.93801 1.00464 1.20990 0.99195 0.97256 0.95890 1.20979 0.96198 0.99046 0.98721 1.20495 0.95563 0.91843 0.98630 1.19397 0.95546 0.94223 0.96779 0.91393 0.79408 0.89518 0.89546 0.86505 0.87713 0.89947 0.89741 0.90517 0.90098 0.86598 0.86248 0.86218 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.96 55.50 0.77 -24.50 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 9 N -0.58 -13.91 5.09 -10.96 -0.06 -13.97 16 10 C 0.45 10.51 7.86 -10.99 -0.09 10.42 16 11 O -0.56 -15.48 16.08 -14.12 -0.23 -15.70 16 12 C 0.06 1.09 5.94 36.01 0.21 1.30 16 13 O -0.32 -5.87 9.75 -45.89 -0.45 -6.31 16 14 C 0.48 7.40 7.74 36.00 0.28 7.68 16 15 O -0.50 -8.10 11.56 -18.76 -0.22 -8.32 16 16 C -0.14 -1.65 6.15 -92.02 -0.57 -2.21 16 17 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 18 C -0.13 -1.19 9.95 -26.92 -0.27 -1.46 16 19 C -0.06 -0.59 2.34 -155.74 -0.36 -0.95 16 20 C -0.08 -0.63 6.85 -25.55 -0.18 -0.80 16 21 C -0.08 -0.66 6.77 -26.75 -0.18 -0.84 16 22 C -0.09 -1.02 6.14 -104.13 -0.64 -1.66 16 23 C -0.12 -1.26 10.04 -39.55 -0.40 -1.65 16 24 C -0.12 -1.20 10.05 -39.63 -0.40 -1.60 16 25 C -0.13 -1.51 10.04 -39.64 -0.40 -1.90 16 26 C -0.05 -0.60 7.46 -39.54 -0.29 -0.89 16 27 C -0.06 -0.72 4.86 -104.41 -0.51 -1.22 16 28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 30 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 31 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.12 1.48 7.22 -52.49 -0.38 1.10 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -34.27 348.86 -8.90 -43.18 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.24 Total: 9.40 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -4.03 Total: -3.49 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.72 Total: -38.47 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.89 Total: -30.34 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.27 -8.90 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745729692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.796 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds