Wall clock time and date at job start Tue Mar 31 2020 10:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48496 * 109.47394 * 270.00195 * 3 2 1 5 5 H 1.48507 * 109.46828 * 30.00045 * 3 2 1 6 6 H 1.48495 * 109.47159 * 149.99379 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 H 1.09003 * 115.56008 * 325.57942 * 16 14 13 18 18 C 1.53122 * 117.52134 * 111.32805 * 16 14 13 19 19 C 1.52404 * 117.51854 * 179.83521 * 16 14 13 20 20 C 1.53788 * 121.12708 * 141.91403 * 19 16 14 21 21 C 1.54475 * 102.20146 * 241.92976 * 20 19 16 22 22 C 1.51421 * 105.23290 * 334.23721 * 21 20 19 23 23 C 1.38465 * 130.36520 * 196.83186 * 22 21 20 24 24 C 1.38100 * 120.26471 * 180.12763 * 23 22 21 25 25 C 1.38251 * 119.91127 * 0.02562 * 24 23 22 26 26 C 1.38077 * 119.94278 * 359.96111 * 25 24 23 27 27 C 1.38386 * 109.79375 * 16.92281 * 22 21 20 28 28 H 0.97002 * 120.00132 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 31 31 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 32 32 H 1.08996 * 117.51869 * 214.88940 * 18 16 14 33 33 H 1.09000 * 117.51208 * 359.97438 * 18 16 14 34 34 H 1.09002 * 110.85258 * 0.10162 * 20 19 16 35 35 H 1.08994 * 110.85712 * 123.75052 * 20 19 16 36 36 H 1.09003 * 110.28956 * 215.30299 * 21 20 19 37 37 H 1.08995 * 110.29472 * 93.18537 * 21 20 19 38 38 H 1.08000 * 119.86850 * 0.15104 * 23 22 21 39 39 H 1.07998 * 120.04341 * 180.02562 * 24 23 22 40 40 H 1.08005 * 120.03067 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.86803 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7394 0.0017 14 6 7.3755 -3.9153 0.0023 15 8 8.1116 -2.9570 0.0018 16 6 7.9516 -5.3078 0.0024 17 1 7.3815 -6.0525 0.5578 18 6 8.6790 -5.7726 -1.2623 19 6 9.4697 -5.4418 -0.0008 20 6 10.1723 -6.5431 0.8107 21 6 11.0267 -5.7230 1.8026 22 6 11.2699 -4.3958 1.1153 23 6 12.2031 -3.4073 1.3786 24 6 12.2385 -2.2610 0.6093 25 6 11.3387 -2.0985 -0.4276 26 6 10.4073 -3.0828 -0.6925 27 6 10.3698 -4.2340 0.0767 28 1 -0.4850 0.8401 0.0004 29 1 3.8648 -0.3633 -0.0004 30 1 5.9241 -1.8558 0.8906 31 1 5.9242 -1.8574 -0.8894 32 1 8.5879 -6.8231 -1.5383 33 1 8.7405 -5.0712 -2.0944 34 1 9.4451 -7.1579 1.3412 35 1 10.8045 -7.1554 0.1679 36 1 11.9732 -6.2286 1.9939 37 1 10.4829 -5.5719 2.7350 38 1 12.9063 -3.5335 2.1885 39 1 12.9682 -1.4925 0.8176 40 1 11.3645 -1.2025 -1.0302 41 1 9.7047 -2.9544 -1.5026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745729692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:28 Heat of formation + Delta-G solvation = -76.121670 kcal Electronic energy + Delta-G solvation = -25379.379690 eV Core-core repulsion = 21610.637470 eV Total energy + Delta-G solvation = -3768.742219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15959 -40.98594 -40.10670 -38.20655 -37.27765 -36.11478 -34.73987 -33.89656 -31.58854 -30.40802 -29.72982 -27.04601 -25.99227 -25.07043 -23.54152 -21.94911 -21.87123 -21.57258 -20.55923 -20.19195 -18.91600 -18.05649 -17.72501 -17.42890 -16.98024 -16.61127 -16.16398 -15.89462 -15.71623 -15.65768 -15.37715 -14.89941 -14.75375 -14.32990 -14.19077 -13.95623 -13.86191 -13.59721 -13.21425 -13.04281 -13.01604 -12.68535 -12.49137 -12.46664 -12.04204 -12.02468 -11.89153 -11.62933 -11.60594 -11.51645 -11.36639 -11.29564 -10.64429 -10.37212 -9.51652 -9.26375 -8.48862 -6.12149 0.40398 0.57529 1.04643 1.26730 1.30753 1.33345 1.42990 1.71883 2.17449 2.59876 2.75879 3.04830 3.05709 3.39734 3.50899 3.54620 3.69266 3.77704 3.93816 4.04938 4.08948 4.13374 4.22326 4.24638 4.46769 4.51048 4.58339 4.69969 4.74774 4.87360 4.89054 4.98344 5.10991 5.20126 5.24425 5.30777 5.34447 5.45751 5.62544 5.69623 5.79760 5.82118 6.18287 6.43905 6.66763 6.74950 7.22230 7.73869 8.67814 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.002921 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.992712 B = 9584.179141 C =10535.957556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.234 1.234 7 C -0.335 4.335 8 H 0.061 0.939 9 N -0.575 5.575 10 C 0.448 3.552 11 O -0.608 6.608 12 C 0.071 3.929 13 O -0.346 6.346 14 C 0.479 3.521 15 O -0.510 6.510 16 C -0.162 4.162 17 H 0.156 0.844 18 C -0.117 4.117 19 C -0.056 4.056 20 C -0.078 4.078 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.147 4.147 26 C -0.069 4.069 27 C -0.082 4.082 28 H 0.283 0.717 29 H 0.393 0.607 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.487 -7.874 0.803 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.780 3.220 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.157 1.157 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.217 5.217 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.006 4.006 13 O -0.261 6.261 14 C 0.324 3.676 15 O -0.399 6.399 16 C -0.181 4.181 17 H 0.173 0.827 18 C -0.154 4.154 19 C -0.056 4.056 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.104 4.104 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.165 4.165 26 C -0.087 4.087 27 C -0.082 4.082 28 H 0.093 0.907 29 H 0.229 0.771 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.166 0.834 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 29.070 -8.161 0.810 30.204 hybrid contribution -0.679 1.562 -0.075 1.705 sum 28.390 -6.599 0.735 29.156 Atomic orbital electron populations 1.69780 1.08036 1.29612 1.48956 1.26079 0.96464 1.02585 0.95516 0.85423 0.79494 0.76829 0.80219 1.17820 1.19481 1.15749 1.19014 0.80693 0.95392 1.51232 0.92081 1.41817 1.06159 1.06961 1.66791 1.20176 0.89313 0.84040 0.82963 1.90577 1.70934 1.32610 1.55162 1.22523 0.90612 0.81694 1.05809 1.86556 1.25210 1.30758 1.83608 1.23402 0.79652 0.92593 0.71978 1.90707 1.59690 1.43477 1.45985 1.21992 0.95326 0.92207 1.08538 0.82692 1.23265 0.97595 1.04756 0.89792 1.20647 0.87685 0.96003 1.01286 1.21963 0.98461 0.94612 0.96463 1.21130 1.01406 0.91011 0.98152 1.20916 0.95625 0.97513 0.96389 1.20842 0.99393 0.93598 1.00897 1.21310 0.99234 0.97973 0.95352 1.21216 0.96504 0.99333 0.99494 1.20568 0.96139 0.92944 0.99026 1.19727 0.96535 0.94722 0.97262 0.90744 0.77142 0.87188 0.86832 0.83428 0.88528 0.88283 0.87909 0.88429 0.90134 0.84416 0.84057 0.85298 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.96 21.66 0.30 -54.64 16 2 C -0.01 -0.35 5.50 84.92 0.47 0.12 16 3 Si 0.96 38.39 27.74 68.60 1.90 40.30 16 4 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 7 C -0.33 -19.61 10.16 84.04 0.85 -18.76 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -27.66 5.09 -306.98 -1.56 -29.22 16 10 C 0.45 21.30 7.86 87.66 0.69 21.99 16 11 O -0.61 -35.28 16.08 15.72 0.25 -35.03 16 12 C 0.07 2.51 5.94 71.24 0.42 2.93 16 13 O -0.35 -12.51 9.75 -45.00 -0.44 -12.95 16 14 C 0.48 14.35 7.74 71.23 0.55 14.90 16 15 O -0.51 -16.20 11.56 21.94 0.25 -15.94 16 16 C -0.16 -3.49 6.15 -11.70 -0.07 -3.56 16 17 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.12 -1.92 9.95 30.47 0.30 -1.61 16 19 C -0.06 -1.02 2.34 -52.98 -0.12 -1.15 16 20 C -0.08 -0.91 6.85 31.36 0.21 -0.70 16 21 C -0.08 -1.09 6.77 30.58 0.21 -0.89 16 22 C -0.10 -2.09 6.14 -19.55 -0.12 -2.21 16 23 C -0.13 -2.44 10.04 22.29 0.22 -2.21 16 24 C -0.12 -2.34 10.05 22.24 0.22 -2.11 16 25 C -0.15 -3.29 10.04 22.23 0.22 -3.07 16 26 C -0.07 -1.72 7.46 22.30 0.17 -1.55 16 27 C -0.08 -1.89 4.86 -19.72 -0.10 -1.98 16 28 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 30 H 0.11 3.40 8.13 -2.39 -0.02 3.38 16 31 H 0.11 3.41 8.13 -2.39 -0.02 3.40 16 32 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.10 2.70 7.22 -2.91 -0.02 2.68 16 Total: -1.00 -79.74 348.86 5.31 -74.43 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.47 Total: 32.91 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 4.13 Total: 0.14 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.26 Total: -83.86 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: 0.07 Total: -63.92 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.90 Total: 40.30 kcal Total: -79.74 5.31 -74.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745729692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.692 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds