Wall clock time and date at job start Tue Mar 31 2020 11:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48503 * 109.47035 * 239.99952 * 3 2 1 5 5 H 1.48498 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47381 * 120.00190 * 3 2 1 7 7 C 1.39939 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99818 * 197.74910 * 7 2 1 9 9 C 1.41435 * 120.00223 * 17.75688 * 7 2 1 10 10 C 1.40788 * 120.17430 * 204.36983 * 9 7 2 11 11 C 1.37713 * 120.05232 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41822 * 359.97438 * 11 10 9 13 13 C 1.39927 * 120.35074 * 359.97438 * 12 11 10 14 14 C 1.47763 * 120.02835 * 179.97438 * 13 12 11 15 15 O 1.21470 * 120.00084 * 179.72460 * 14 13 12 16 16 O 1.34711 * 120.00308 * 359.97438 * 14 13 12 17 17 C 1.45193 * 117.00277 * 180.02562 * 16 14 13 18 18 H 1.09001 * 110.85940 * 32.33297 * 17 16 14 19 19 C 1.54628 * 110.96843 * 268.54807 * 17 16 14 20 20 C 1.51291 * 104.19433 * 266.67721 * 19 17 16 21 21 O 1.21282 * 124.94149 * 163.78306 * 20 19 17 22 22 N 1.34415 * 110.11369 * 343.74776 * 20 19 17 23 23 C 1.46497 * 124.35017 * 179.56822 * 22 20 19 24 24 C 1.53006 * 117.49623 * 8.72575 * 23 22 20 25 25 C 1.53001 * 117.49938 * 300.06687 * 23 22 20 26 26 C 1.46762 * 111.30480 * 359.59126 * 22 20 19 27 27 C 1.39081 * 119.93990 * 0.27065 * 13 12 11 28 28 H 0.97005 * 120.00165 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.97536 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.79283 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.82083 * 179.97438 * 12 11 10 32 32 H 1.08998 * 110.49130 * 25.35293 * 19 17 16 33 33 H 1.09003 * 110.48575 * 148.00243 * 19 17 16 34 34 H 1.08997 * 115.55206 * 154.38929 * 23 22 20 35 35 H 1.09002 * 117.49862 * 359.97438 * 24 23 22 36 36 H 1.09004 * 117.50007 * 145.01934 * 24 23 22 37 37 H 1.09003 * 117.49804 * 214.97453 * 25 23 22 38 38 H 1.08996 * 117.50008 * 359.97307 * 25 23 22 39 39 H 1.08997 * 110.24804 * 258.01563 * 26 22 20 40 40 H 1.08994 * 110.24803 * 136.01426 * 26 22 20 41 41 H 1.08005 * 120.20700 * 179.72906 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0078 -1.2119 0.0005 8 1 3.0493 -1.2341 0.2857 9 6 1.3512 -2.4078 -0.3725 10 6 1.8272 -3.6500 0.0885 11 6 1.1856 -4.8127 -0.2758 12 6 0.0711 -4.7709 -1.0947 13 6 -0.4173 -3.5457 -1.5619 14 6 -1.6077 -3.5093 -2.4366 15 8 -2.0343 -2.4451 -2.8378 16 8 -2.2229 -4.6559 -2.7850 17 6 -3.3859 -4.5445 -3.6470 18 1 -3.2858 -3.6979 -4.3263 19 6 -4.6838 -4.4348 -2.8137 20 6 -5.1717 -5.8621 -2.6973 21 8 -5.9973 -6.2510 -1.8985 22 7 -4.5578 -6.6362 -3.6086 23 6 -4.7912 -8.0742 -3.7637 24 6 -5.9429 -8.6926 -2.9685 25 6 -4.4941 -8.9718 -2.5608 26 6 -3.6230 -5.8561 -4.4281 27 6 0.2223 -2.3627 -1.2073 28 1 -0.4850 0.8401 0.0004 29 1 2.6963 -3.6910 0.7284 30 1 1.5541 -5.7633 0.0806 31 1 -0.4244 -5.6888 -1.3748 32 1 -4.4703 -4.0230 -1.8274 33 1 -5.4200 -3.8212 -3.3332 34 1 -4.5902 -8.4789 -4.7555 35 1 -6.5266 -8.0296 -2.3298 36 1 -6.4992 -9.5044 -3.4372 37 1 -4.0979 -9.9673 -2.7614 38 1 -4.1245 -8.4927 -1.6543 39 1 -4.0636 -5.6411 -5.4015 40 1 -2.6849 -6.3977 -4.5492 41 1 -0.1484 -1.4149 -1.5690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762110031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:07 Heat of formation + Delta-G solvation = -63.575492 kcal Electronic energy + Delta-G solvation = -25567.682447 eV Core-core repulsion = 21799.484270 eV Total energy + Delta-G solvation = -3768.198176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -40.98109 -39.66555 -37.54310 -36.74639 -36.51043 -35.05818 -33.80086 -30.86016 -30.11107 -29.55565 -27.76827 -25.45951 -23.83745 -23.17545 -22.53593 -21.58833 -21.03067 -19.99733 -19.28050 -18.03893 -17.13386 -17.02595 -16.23752 -15.80212 -15.49721 -15.43440 -14.93953 -14.69350 -14.59234 -13.90409 -13.66592 -13.58491 -13.39600 -13.27553 -12.83111 -12.64092 -12.58108 -12.11317 -11.74826 -11.63296 -11.46104 -11.25464 -11.23700 -11.16194 -10.82717 -10.64085 -10.58354 -10.54770 -10.28957 -9.79595 -9.60511 -9.55927 -9.28730 -8.70206 -7.81639 -7.61884 -6.88122 -4.49274 1.87674 2.40107 2.65582 2.73542 2.95594 3.03159 3.04595 3.10178 3.47984 3.67895 3.85960 4.12800 4.23114 4.51072 4.54010 4.64629 4.80278 4.81141 5.01836 5.14726 5.25083 5.32693 5.41684 5.48161 5.55460 5.66450 5.79399 5.84422 6.07581 6.11549 6.33708 6.49678 6.55393 6.80613 6.87672 6.90346 6.90799 7.11253 7.24378 7.61261 7.68557 7.84556 8.03196 8.04041 8.37814 8.41504 8.70940 8.73004 10.07089 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.003033 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.283405 B = 9229.647779 C = 9865.327609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.194 4.194 13 C -0.116 4.116 14 C 0.513 3.487 15 O -0.513 6.513 16 O -0.343 6.343 17 C 0.075 3.925 18 H 0.115 0.885 19 C -0.172 4.172 20 C 0.526 3.474 21 O -0.526 6.526 22 N -0.592 5.592 23 C 0.080 3.920 24 C -0.191 4.191 25 C -0.189 4.189 26 C 0.112 3.888 27 C -0.089 4.089 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 -10.436 -9.378 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.220 4.220 11 C -0.121 4.121 12 C -0.214 4.214 13 C -0.117 4.117 14 C 0.361 3.639 15 O -0.402 6.402 16 O -0.261 6.261 17 C 0.018 3.982 18 H 0.133 0.867 19 C -0.212 4.212 20 C 0.315 3.685 21 O -0.403 6.403 22 N -0.325 5.325 23 C -0.024 4.024 24 C -0.228 4.228 25 C -0.228 4.228 26 C -0.011 4.011 27 C -0.108 4.108 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.767 -10.219 -9.096 15.732 hybrid contribution 0.318 0.779 -0.014 0.842 sum -7.448 -9.440 -9.111 15.086 Atomic orbital electron populations 1.69764 1.07606 1.29988 1.33657 1.25969 0.94792 1.01619 0.92208 0.86297 0.80102 0.79953 0.80045 1.18688 1.20198 1.18900 1.19549 0.98249 0.90919 1.40109 0.89937 1.17536 0.91161 0.92600 0.89396 1.21195 1.03141 0.92708 1.04996 1.20510 0.96083 0.96949 0.98565 1.20551 1.00116 0.95248 1.05491 1.18800 0.94770 0.95949 1.02200 1.21952 0.82976 0.80856 0.78148 1.90767 1.65221 1.30943 1.53310 1.86729 1.40586 1.36347 1.62398 1.23410 0.83875 0.98688 0.92186 0.86748 1.22827 0.98072 0.95564 1.04729 1.20807 0.80171 0.88215 0.79350 1.90597 1.33446 1.78214 1.38073 1.47595 1.42302 1.07090 1.35471 1.21506 1.05337 0.78695 0.96817 1.23775 0.92297 1.03137 1.03637 1.23377 0.99162 1.00612 0.99650 1.22195 0.94401 0.91063 0.93442 1.21657 0.96473 0.95959 0.96722 0.90300 0.88306 0.88529 0.87977 0.86899 0.86252 0.85279 0.85130 0.88585 0.88172 0.88453 0.88869 0.88532 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.13 10.95 55.55 0.61 -19.52 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.10 2.45 5.57 -106.87 -0.60 1.85 16 10 C -0.20 -4.63 9.78 -38.81 -0.38 -5.01 16 11 C -0.10 -2.17 10.01 -39.73 -0.40 -2.57 16 12 C -0.19 -4.17 9.62 -38.90 -0.37 -4.54 16 13 C -0.12 -2.69 5.87 -105.06 -0.62 -3.30 16 14 C 0.51 10.75 7.90 34.62 0.27 11.02 16 15 O -0.51 -11.53 15.67 -19.24 -0.30 -11.83 16 16 O -0.34 -5.89 9.23 -40.52 -0.37 -6.26 16 17 C 0.07 0.96 3.42 -25.10 -0.09 0.88 16 18 H 0.11 1.39 7.33 -51.93 -0.38 1.01 16 19 C -0.17 -2.25 6.62 -26.74 -0.18 -2.42 16 20 C 0.53 7.52 7.88 -10.86 -0.09 7.43 16 21 O -0.53 -9.02 14.69 5.56 0.08 -8.94 16 22 N -0.59 -6.92 3.27 -164.84 -0.54 -7.45 16 23 C 0.08 0.80 6.88 -67.93 -0.47 0.34 16 24 C -0.19 -2.03 9.78 -26.69 -0.26 -2.29 16 25 C -0.19 -2.00 10.35 -26.69 -0.28 -2.28 16 26 C 0.11 1.08 7.11 -3.12 -0.02 1.05 16 27 C -0.09 -2.27 8.24 -38.43 -0.32 -2.59 16 28 H 0.29 6.73 8.30 -40.82 -0.34 6.40 16 29 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.10 1.98 7.59 -52.48 -0.40 1.58 16 32 H 0.11 1.71 8.11 -51.93 -0.42 1.29 16 33 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.13 1.78 5.29 -51.93 -0.27 1.51 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.14 3.71 5.74 -52.48 -0.30 3.41 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -29.93 351.28 -9.60 -39.54 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.13 Total: 8.77 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -4.21 Total: -12.75 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.07 Total: -26.97 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.59 Total: -27.03 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.93 -9.60 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762110031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.038 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds