Wall clock time and date at job start Tue Mar 31 2020 11:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48503 * 109.47035 * 239.99952 * 3 2 1 5 5 H 1.48498 * 109.47180 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47381 * 120.00190 * 3 2 1 7 7 C 1.39939 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99818 * 197.74910 * 7 2 1 9 9 C 1.41435 * 120.00223 * 17.75688 * 7 2 1 10 10 C 1.40788 * 120.17430 * 204.36983 * 9 7 2 11 11 C 1.37713 * 120.05232 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41822 * 359.97438 * 11 10 9 13 13 C 1.39927 * 120.35074 * 359.97438 * 12 11 10 14 14 C 1.47763 * 120.02835 * 179.97438 * 13 12 11 15 15 O 1.21470 * 120.00084 * 179.72460 * 14 13 12 16 16 O 1.34711 * 120.00308 * 359.97438 * 14 13 12 17 17 C 1.45193 * 117.00277 * 180.02562 * 16 14 13 18 18 H 1.09001 * 110.85940 * 32.33297 * 17 16 14 19 19 C 1.54628 * 110.96843 * 268.54807 * 17 16 14 20 20 C 1.51291 * 104.19433 * 266.67721 * 19 17 16 21 21 O 1.21282 * 124.94149 * 163.78306 * 20 19 17 22 22 N 1.34415 * 110.11369 * 343.74776 * 20 19 17 23 23 C 1.46497 * 124.35017 * 179.56822 * 22 20 19 24 24 C 1.53006 * 117.49623 * 8.72575 * 23 22 20 25 25 C 1.53001 * 117.49938 * 300.06687 * 23 22 20 26 26 C 1.46762 * 111.30480 * 359.59126 * 22 20 19 27 27 C 1.39081 * 119.93990 * 0.27065 * 13 12 11 28 28 H 0.97005 * 120.00165 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.97536 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.79283 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.82083 * 179.97438 * 12 11 10 32 32 H 1.08998 * 110.49130 * 25.35293 * 19 17 16 33 33 H 1.09003 * 110.48575 * 148.00243 * 19 17 16 34 34 H 1.08997 * 115.55206 * 154.38929 * 23 22 20 35 35 H 1.09002 * 117.49862 * 359.97438 * 24 23 22 36 36 H 1.09004 * 117.50007 * 145.01934 * 24 23 22 37 37 H 1.09003 * 117.49804 * 214.97453 * 25 23 22 38 38 H 1.08996 * 117.50008 * 359.97307 * 25 23 22 39 39 H 1.08997 * 110.24804 * 258.01563 * 26 22 20 40 40 H 1.08994 * 110.24803 * 136.01426 * 26 22 20 41 41 H 1.08005 * 120.20700 * 179.72906 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0078 -1.2119 0.0005 8 1 3.0493 -1.2341 0.2857 9 6 1.3512 -2.4078 -0.3725 10 6 1.8272 -3.6500 0.0885 11 6 1.1856 -4.8127 -0.2758 12 6 0.0711 -4.7709 -1.0947 13 6 -0.4173 -3.5457 -1.5619 14 6 -1.6077 -3.5093 -2.4366 15 8 -2.0343 -2.4451 -2.8378 16 8 -2.2229 -4.6559 -2.7850 17 6 -3.3859 -4.5445 -3.6470 18 1 -3.2858 -3.6979 -4.3263 19 6 -4.6838 -4.4348 -2.8137 20 6 -5.1717 -5.8621 -2.6973 21 8 -5.9973 -6.2510 -1.8985 22 7 -4.5578 -6.6362 -3.6086 23 6 -4.7912 -8.0742 -3.7637 24 6 -5.9429 -8.6926 -2.9685 25 6 -4.4941 -8.9718 -2.5608 26 6 -3.6230 -5.8561 -4.4281 27 6 0.2223 -2.3627 -1.2073 28 1 -0.4850 0.8401 0.0004 29 1 2.6963 -3.6910 0.7284 30 1 1.5541 -5.7633 0.0806 31 1 -0.4244 -5.6888 -1.3748 32 1 -4.4703 -4.0230 -1.8274 33 1 -5.4200 -3.8212 -3.3332 34 1 -4.5902 -8.4789 -4.7555 35 1 -6.5266 -8.0296 -2.3298 36 1 -6.4992 -9.5044 -3.4372 37 1 -4.0979 -9.9673 -2.7614 38 1 -4.1245 -8.4927 -1.6543 39 1 -4.0636 -5.6411 -5.4015 40 1 -2.6849 -6.3977 -4.5492 41 1 -0.1484 -1.4149 -1.5690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762110031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:03 Heat of formation + Delta-G solvation = -79.198777 kcal Electronic energy + Delta-G solvation = -25568.359923 eV Core-core repulsion = 21799.484270 eV Total energy + Delta-G solvation = -3768.875653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12265 -41.09258 -39.23007 -37.91612 -37.68234 -36.30613 -35.60872 -32.35729 -31.49351 -31.30133 -28.75748 -27.29823 -25.37949 -24.07637 -23.38542 -22.93996 -22.67574 -21.54347 -20.31119 -19.71665 -18.51313 -18.04161 -17.81680 -17.11043 -16.92990 -16.69472 -16.53044 -16.23887 -15.58104 -15.25032 -15.11455 -14.78161 -14.57148 -14.43756 -14.39502 -14.21274 -13.76794 -13.52284 -13.21697 -12.99922 -12.82860 -12.57665 -12.56965 -12.50488 -12.23066 -12.08668 -12.04576 -11.86415 -11.56636 -11.38704 -11.29161 -11.08632 -10.66398 -9.62872 -9.61537 -9.45555 -8.69198 -6.40374 0.11676 0.96384 1.31110 1.38275 1.46980 1.51490 1.56590 1.77199 1.82188 2.19175 2.71143 2.85544 3.14214 3.23468 3.47381 3.62471 3.82072 3.86480 3.98693 4.03730 4.19308 4.35082 4.41242 4.46998 4.56213 4.60983 4.66132 4.68767 4.78395 4.87010 5.01181 5.04505 5.12074 5.26232 5.26512 5.27696 5.43934 5.61762 5.80085 5.88391 5.93687 6.00184 6.22124 6.52004 6.78691 6.85750 6.87899 6.98548 8.27985 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023206 B = 0.003033 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.283405 B = 9229.647779 C = 9865.327609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.494 4.494 8 H 0.087 0.913 9 C 0.066 3.934 10 C -0.205 4.205 11 C -0.100 4.100 12 C -0.183 4.183 13 C -0.129 4.129 14 C 0.520 3.480 15 O -0.536 6.536 16 O -0.340 6.340 17 C 0.065 3.935 18 H 0.126 0.874 19 C -0.171 4.171 20 C 0.516 3.484 21 O -0.565 6.565 22 N -0.589 5.589 23 C 0.081 3.919 24 C -0.198 4.198 25 C -0.194 4.194 26 C 0.119 3.881 27 C -0.121 4.121 28 H 0.288 0.712 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.172 0.828 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 -12.363 -11.255 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.105 0.895 9 C 0.064 3.936 10 C -0.225 4.225 11 C -0.118 4.118 12 C -0.202 4.202 13 C -0.130 4.130 14 C 0.367 3.633 15 O -0.427 6.427 16 O -0.257 6.257 17 C 0.010 3.990 18 H 0.144 0.856 19 C -0.211 4.211 20 C 0.305 3.695 21 O -0.445 6.445 22 N -0.320 5.320 23 C -0.021 4.021 24 C -0.235 4.235 25 C -0.233 4.233 26 C -0.002 4.002 27 C -0.141 4.141 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.164 0.836 34 H 0.189 0.811 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.157 0.843 40 H 0.129 0.871 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.253 -12.191 -10.995 17.948 hybrid contribution 0.076 1.168 0.550 1.294 sum -7.177 -11.022 -10.446 16.796 Atomic orbital electron populations 1.69858 1.09225 1.30880 1.35069 1.26849 0.95416 1.04943 0.91198 0.85222 0.78699 0.75373 0.80311 1.18294 1.19692 1.17834 1.19842 0.98694 0.91955 1.41786 0.89483 1.17901 0.91758 0.93963 0.90007 1.21490 1.03583 0.92595 1.04813 1.20940 0.95331 0.97988 0.97501 1.20915 0.99760 0.95394 1.04154 1.19084 0.95534 0.95952 1.02468 1.21570 0.82605 0.81422 0.77675 1.90746 1.65815 1.32043 1.54106 1.86677 1.41854 1.34185 1.62997 1.23885 0.81841 1.01526 0.91756 0.85607 1.22841 0.99021 0.95574 1.03694 1.21003 0.80100 0.88892 0.79537 1.90594 1.35292 1.78890 1.39752 1.47755 1.41613 1.07942 1.34723 1.21975 1.04275 0.77512 0.98352 1.23701 0.92318 1.03622 1.03847 1.23376 0.99209 1.01910 0.98758 1.22458 0.94994 0.88864 0.93900 1.21475 0.98022 0.95910 0.98698 0.90091 0.86816 0.84446 0.85361 0.89716 0.83640 0.81101 0.88554 0.85843 0.85433 0.91755 0.84320 0.87105 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.28 10.95 21.82 0.24 -44.04 16 2 C 0.03 1.57 5.14 85.26 0.44 2.01 16 3 Si 0.98 38.05 29.59 68.60 2.03 40.08 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 7 C -0.49 -25.91 9.05 23.47 0.21 -25.70 16 8 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.07 3.48 5.57 -21.32 -0.12 3.36 16 10 C -0.21 -9.39 9.78 22.77 0.22 -9.17 16 11 C -0.10 -4.00 10.01 22.18 0.22 -3.78 16 12 C -0.18 -7.56 9.62 22.71 0.22 -7.34 16 13 C -0.13 -6.06 5.87 -20.15 -0.12 -6.18 16 14 C 0.52 21.93 7.90 70.34 0.56 22.48 16 15 O -0.54 -24.70 15.67 19.93 0.31 -24.38 16 16 O -0.34 -11.29 9.23 -56.21 -0.52 -11.81 16 17 C 0.07 1.56 3.42 31.65 0.11 1.66 16 18 H 0.13 2.80 7.33 -2.39 -0.02 2.78 16 19 C -0.17 -4.40 6.62 30.59 0.20 -4.20 16 20 C 0.52 14.48 7.88 87.90 0.69 15.17 16 21 O -0.57 -19.94 14.69 -3.04 -0.04 -19.98 16 22 N -0.59 -12.26 3.27 -794.03 -2.60 -14.85 16 23 C 0.08 1.38 6.88 44.99 0.31 1.69 16 24 C -0.20 -3.89 9.78 30.62 0.30 -3.59 16 25 C -0.19 -3.74 10.35 30.62 0.32 -3.43 16 26 C 0.12 1.83 7.11 86.83 0.62 2.45 16 27 C -0.12 -6.48 8.24 23.02 0.19 -6.29 16 28 H 0.29 14.25 8.30 -92.70 -0.77 13.49 16 29 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 30 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.13 4.60 7.59 -2.91 -0.02 4.57 16 32 H 0.08 2.68 8.11 -2.39 -0.02 2.67 16 33 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.17 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 2.67 5.29 -2.39 -0.01 2.66 16 36 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.51 8.11 -2.39 -0.02 1.49 16 41 H 0.11 6.32 5.74 -2.91 -0.02 6.30 16 Total: -1.00 -70.14 351.28 4.85 -65.29 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 1.06 Total: 30.54 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.37 Total: -20.84 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -2.36 Total: -58.89 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -0.25 Total: -56.17 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -70.14 4.85 -65.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762110031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.906 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds