Wall clock time and date at job start Tue Mar 31 2020 11:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35892 * 117.00092 * 2 1 4 4 C 1.39821 * 119.64463 * 0.35242 * 3 2 1 5 5 C 1.36038 * 121.03393 * 180.28669 * 4 3 2 6 6 C 1.40565 * 119.89061 * 359.40623 * 5 4 3 7 7 N 1.33844 * 120.75544 * 180.28009 * 6 5 4 8 8 C 1.30771 * 121.74650 * 179.97438 * 7 6 5 9 9 C 1.50697 * 119.23274 * 180.02562 * 8 7 6 10 10 C 1.40658 * 121.54250 * 359.97438 * 8 7 6 11 11 C 1.47630 * 120.27979 * 179.97438 * 10 8 7 12 12 O 1.21486 * 119.99832 * 6.30323 * 11 10 8 13 13 O 1.34728 * 120.00113 * 186.30169 * 11 10 8 14 14 C 1.45195 * 117.00067 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47226 * 330.00644 * 14 13 11 16 16 C 1.53006 * 109.46928 * 90.00628 * 14 13 11 17 17 C 1.50704 * 109.47104 * 210.00204 * 14 13 11 18 18 H 1.08001 * 119.99988 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99858 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00196 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 120.00103 * 180.02562 * 19 17 14 22 22 H 1.48509 * 109.47112 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47505 * 119.99636 * 21 19 17 24 24 H 1.48500 * 109.47160 * 240.00013 * 21 19 17 25 25 C 1.39067 * 119.43913 * 359.97438 * 10 8 7 26 26 C 1.40543 * 117.96910 * 0.02562 * 25 10 8 27 27 C 1.36615 * 119.64812 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47135 * 299.99843 * 1 2 3 30 30 H 1.08994 * 109.47694 * 59.99782 * 1 2 3 31 31 H 1.08003 * 119.48439 * 359.97014 * 4 3 2 32 32 H 1.07998 * 120.05560 * 179.68506 * 5 4 3 33 33 H 1.09008 * 109.47053 * 96.66958 * 9 8 7 34 34 H 1.08998 * 109.47489 * 216.67136 * 9 8 7 35 35 H 1.09004 * 109.46828 * 336.67971 * 9 8 7 36 36 H 1.08999 * 109.47010 * 59.99207 * 16 14 13 37 37 H 1.08995 * 109.46994 * 180.02562 * 16 14 13 38 38 H 1.09003 * 109.46530 * 300.00067 * 16 14 13 39 39 H 0.96992 * 120.00440 * 180.02562 * 20 19 17 40 40 H 1.08003 * 121.01454 * 179.97438 * 25 10 8 41 41 H 1.07996 * 120.20365 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2772 2.3787 0.0075 5 6 1.8652 3.6054 0.0018 6 6 3.2669 3.7103 0.0009 7 7 3.8636 4.9084 0.0011 8 6 5.1658 5.0286 0.0007 9 6 5.7778 6.4057 0.0015 10 6 6.0086 3.9025 0.0008 11 6 7.4753 4.0705 -0.0002 12 8 7.9598 5.1786 0.1145 13 8 8.2765 2.9949 -0.1282 14 6 9.7085 3.2351 -0.1214 15 1 9.9131 4.2232 -0.5333 16 6 10.2308 3.1630 1.3149 17 6 10.3972 2.1889 -0.9595 18 1 9.8168 1.4207 -1.4486 19 6 11.7684 2.2126 -1.1017 20 7 12.4753 3.1484 -0.5065 21 14 12.6222 0.9164 -2.1410 22 1 11.6100 -0.0163 -2.6990 23 1 13.3539 1.5758 -3.2522 24 1 13.5812 0.1585 -1.2977 25 6 5.4486 2.6296 0.0017 26 6 4.0470 2.5261 0.0020 27 6 3.4106 1.2739 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.1996 2.3058 0.0127 32 1 1.2561 4.4972 0.0026 33 1 6.0347 6.6885 1.0224 34 1 6.6783 6.4035 -0.6125 35 1 5.0627 7.1212 -0.4047 36 1 10.0260 2.1748 1.7268 37 1 11.3057 3.3437 1.3201 38 1 9.7326 3.9197 1.9210 39 1 13.4398 3.1653 -0.6068 40 1 6.0718 1.7474 0.0013 41 1 3.9964 0.3666 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770127819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:22 Heat of formation + Delta-G solvation = -87.332092 kcal Electronic energy + Delta-G solvation = -25335.588482 eV Core-core repulsion = 21566.360142 eV Total energy + Delta-G solvation = -3769.228340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.29507 -41.21339 -40.16286 -37.89935 -37.00048 -35.42716 -34.73719 -32.56964 -31.98772 -31.25008 -28.98441 -27.73473 -27.46151 -26.08158 -24.01691 -23.54596 -23.01759 -21.83171 -19.81663 -19.19487 -18.75646 -18.28268 -17.65155 -17.47344 -16.98065 -16.68770 -16.61568 -16.00787 -15.70698 -15.57908 -15.11169 -14.68677 -14.58438 -14.28977 -14.25851 -13.98878 -13.83237 -13.61624 -13.42616 -13.13829 -13.04215 -12.89292 -12.79890 -12.78039 -12.39250 -12.13231 -12.08489 -11.75718 -11.62672 -11.46739 -11.29380 -10.99992 -10.69256 -10.59307 -9.85219 -8.95087 -8.29143 -6.45720 -1.01288 -0.49152 0.68025 1.29441 1.42214 1.42889 1.56182 1.82535 1.96291 2.27788 2.40137 2.89823 3.01830 3.05718 3.43178 3.47833 3.58050 3.70720 3.80938 4.00523 4.23960 4.38990 4.46416 4.47503 4.53424 4.60996 4.66296 4.73098 4.76396 4.78777 4.79992 4.82860 4.89167 5.02347 5.09238 5.12320 5.22649 5.35501 5.46961 5.54095 5.62342 5.89451 6.04577 6.31867 6.57974 6.70343 6.87480 7.25490 8.78830 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015977 B = 0.003201 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.050069 B = 8746.244348 C =10152.388927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.329 6.329 3 C 0.125 3.875 4 C -0.142 4.142 5 C -0.065 4.065 6 C 0.105 3.895 7 N -0.479 5.479 8 C 0.192 3.808 9 C -0.105 4.105 10 C -0.183 4.183 11 C 0.498 3.502 12 O -0.526 6.526 13 O -0.356 6.356 14 C 0.220 3.780 15 H 0.013 0.987 16 C -0.143 4.143 17 C -0.547 4.547 18 H 0.068 0.932 19 C 0.017 3.983 20 N -0.916 5.916 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.271 1.271 25 C 0.010 3.990 26 C -0.093 4.093 27 C -0.143 4.143 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.178 0.822 32 H 0.165 0.835 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.024 0.976 39 H 0.271 0.729 40 H 0.163 0.837 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.003 -4.015 1.455 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.243 6.243 3 C 0.079 3.921 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.017 4.017 7 N -0.188 5.188 8 C 0.039 3.961 9 C -0.162 4.162 10 C -0.186 4.186 11 C 0.344 3.656 12 O -0.418 6.418 13 O -0.272 6.272 14 C 0.167 3.833 15 H 0.031 0.969 16 C -0.201 4.201 17 C -0.585 4.585 18 H 0.086 0.914 19 C -0.183 4.183 20 N -0.554 5.554 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.016 4.016 26 C -0.095 4.095 27 C -0.163 4.163 28 H 0.136 0.864 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.195 0.805 32 H 0.182 0.818 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.181 0.819 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.186 -3.158 1.517 26.419 hybrid contribution 1.507 -0.823 -0.307 1.744 sum -24.679 -3.981 1.210 25.027 Atomic orbital electron populations 1.23470 0.75876 1.05993 1.02860 1.86121 1.23955 1.25915 1.88306 1.18745 0.91842 0.85402 0.96076 1.21540 1.02478 0.90546 1.01575 1.20905 0.90698 0.99444 0.97277 1.19452 0.95712 0.87650 0.98849 1.67888 1.09986 1.25871 1.15046 1.21581 0.88288 0.95717 0.90503 1.21014 1.00960 0.89993 1.04184 1.20071 0.90031 0.96317 1.12198 1.21280 0.88432 0.83032 0.72899 1.90717 1.77486 1.26577 1.47063 1.86515 1.22560 1.36400 1.81755 1.20412 0.70748 0.97018 0.95159 0.96933 1.21999 1.03388 0.98982 0.95701 1.21315 0.92497 1.13342 1.31347 0.91406 1.25807 0.97245 0.98382 0.96824 1.70014 1.07460 1.34351 1.43540 0.85141 0.78154 0.78139 0.78013 1.18751 1.20162 1.19648 1.22325 0.94285 0.97316 0.87638 1.18543 0.92901 0.94725 1.03335 1.20243 0.93000 0.96723 1.06308 0.86410 0.90947 0.90992 0.80466 0.81797 0.89710 0.89885 0.89172 0.93552 0.89903 0.95660 0.91951 0.81907 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.33 -5.28 10.47 -92.33 -0.97 -6.25 16 3 C 0.13 2.29 6.64 22.27 0.15 2.44 16 4 C -0.14 -1.99 8.94 22.14 0.20 -1.80 16 5 C -0.06 -1.19 9.96 22.33 0.22 -0.97 16 6 C 0.10 2.80 6.61 40.29 0.27 3.07 16 7 N -0.48 -14.49 10.19 -175.74 -1.79 -16.28 16 8 C 0.19 6.41 6.82 43.31 0.30 6.71 16 9 C -0.10 -3.24 8.82 71.24 0.63 -2.61 16 10 C -0.18 -6.64 5.88 -20.01 -0.12 -6.76 16 11 C 0.50 22.08 7.79 70.30 0.55 22.63 16 12 O -0.53 -25.11 12.57 19.88 0.25 -24.86 16 13 O -0.36 -17.39 9.17 -56.38 -0.52 -17.91 16 14 C 0.22 12.09 2.56 29.85 0.08 12.17 16 15 H 0.01 0.79 7.16 -2.39 -0.02 0.77 16 16 C -0.14 -7.39 9.33 71.98 0.67 -6.72 16 17 C -0.55 -31.05 8.90 25.60 0.23 -30.82 16 18 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 19 C 0.02 0.95 5.30 84.65 0.45 1.40 16 20 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 21 Si 0.98 42.82 29.54 68.60 2.03 44.85 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 C 0.01 0.31 9.48 23.03 0.22 0.53 16 26 C -0.09 -2.53 5.74 -21.29 -0.12 -2.66 16 27 C -0.14 -3.23 9.68 22.43 0.22 -3.02 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.26 7.62 -2.38 -0.02 0.24 16 30 H 0.07 0.27 7.65 -2.39 -0.02 0.25 16 31 H 0.18 1.04 6.22 -2.91 -0.02 1.02 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.08 2.95 5.81 -2.39 -0.01 2.94 16 35 H 0.09 2.32 8.14 -2.38 -0.02 2.31 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.08 4.58 6.07 -2.39 -0.01 4.56 16 38 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.16 4.82 7.68 -2.91 -0.02 4.80 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -69.38 348.01 5.34 -64.04 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.06 Total: 13.80 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.04 Total: -5.22 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -1.55 Total: -68.45 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -1.23 Total: -49.01 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.38 5.34 -64.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770127819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.296 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds