Wall clock time and date at job start Tue Mar 31 2020 11:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50700 * 109.61409 * 25.77364 * 3 2 1 5 5 O 1.20836 * 119.99842 * 239.77459 * 4 3 2 6 6 O 1.34230 * 120.00177 * 59.77609 * 4 3 2 7 7 C 1.45198 * 116.99801 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47194 * 179.97438 * 7 6 4 9 9 C 1.38627 * 119.75393 * 269.73723 * 8 7 6 10 10 C 1.37618 * 120.25097 * 179.72267 * 9 8 7 11 11 C 1.40716 * 119.74159 * 0.56352 * 10 9 8 12 12 C 1.41395 * 120.24641 * 179.68961 * 11 10 9 13 13 H 1.08002 * 120.00065 * 24.40177 * 12 11 10 14 14 C 1.39940 * 120.00256 * 204.41417 * 12 11 10 15 15 N 1.30827 * 120.00034 * 17.84897 * 14 12 11 16 16 Si 1.86799 * 120.00050 * 197.85277 * 14 12 11 17 17 H 1.48501 * 109.47136 * 89.99579 * 16 14 12 18 18 H 1.48506 * 109.47003 * 209.99406 * 16 14 12 19 19 H 1.48494 * 109.47132 * 329.99691 * 16 14 12 20 20 C 1.40714 * 119.51362 * 359.70373 * 11 10 9 21 21 C 1.37616 * 119.74551 * 0.02562 * 20 11 10 22 22 C 1.53173 * 109.54384 * 265.54978 * 3 2 1 23 23 C 1.53097 * 109.16390 * 297.11570 * 22 3 2 24 24 O 1.42899 * 109.41255 * 302.38757 * 23 22 3 25 25 C 1.42911 * 114.09664 * 61.16225 * 24 23 22 26 26 C 1.53093 * 109.41143 * 298.83708 * 25 24 23 27 27 H 1.08998 * 109.47516 * 300.00569 * 7 6 4 28 28 H 1.09006 * 109.47202 * 60.00405 * 7 6 4 29 29 H 1.08001 * 119.87520 * 359.96834 * 9 8 7 30 30 H 1.07997 * 120.13122 * 180.27534 * 10 9 8 31 31 H 0.96996 * 119.99875 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.13374 * 179.97438 * 20 11 10 33 33 H 1.08000 * 119.88305 * 179.97438 * 21 20 11 34 34 H 1.09001 * 109.52220 * 177.20710 * 22 3 2 35 35 H 1.09003 * 109.52682 * 57.02003 * 22 3 2 36 36 H 1.08993 * 109.47998 * 62.37530 * 23 22 3 37 37 H 1.09002 * 109.47703 * 182.39617 * 23 22 3 38 38 H 1.09000 * 109.47959 * 58.81911 * 25 24 23 39 39 H 1.08994 * 109.47971 * 178.85872 * 25 24 23 40 40 H 1.09001 * 109.52524 * 177.51096 * 26 25 24 41 41 H 1.08993 * 109.52497 * 297.64116 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1145 -1.2774 -0.6172 5 8 3.8138 -2.0235 0.0265 6 8 2.7887 -1.5871 -1.8821 7 6 3.3126 -2.8336 -2.4114 8 6 2.8451 -3.0115 -3.8330 9 6 1.6557 -3.6763 -4.0880 10 6 1.2163 -3.8396 -5.3819 11 6 1.9855 -3.3392 -6.4487 12 6 1.5474 -3.5068 -7.7826 13 1 0.4971 -3.6446 -7.9927 14 6 2.4749 -3.4943 -8.8304 15 7 3.7458 -3.6791 -8.5813 16 14 1.8981 -3.2138 -10.5849 17 1 1.9135 -1.7594 -10.8844 18 1 2.8053 -3.9220 -11.5234 19 1 0.5172 -3.7368 -10.7416 20 6 3.1939 -2.6709 -6.1783 21 6 3.6110 -2.5143 -4.8762 22 6 3.1204 0.1129 1.4391 23 6 2.6668 1.4499 2.0313 24 8 3.1505 2.5190 1.2158 25 6 2.6663 2.4926 -0.1285 26 6 3.1199 1.1976 -0.8073 27 1 4.4020 -2.8094 -2.3870 28 1 2.9540 -3.6651 -1.8046 29 1 1.0696 -4.0641 -3.2679 30 1 0.2872 -4.3540 -5.5780 31 1 4.3887 -3.6701 -9.3076 32 1 3.7923 -2.2832 -6.9894 33 1 4.5384 -2.0021 -4.6662 34 1 4.2093 0.0635 1.4430 35 1 2.7156 -0.7053 2.0348 36 1 1.5778 1.4819 2.0645 37 1 3.0644 1.5538 3.0408 38 1 1.5772 2.5383 -0.1235 39 1 3.0638 3.3479 -0.6748 40 1 2.7147 1.1550 -1.8184 41 1 4.2087 1.1706 -0.8498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776213898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:30 Heat of formation + Delta-G solvation = -91.681257 kcal Electronic energy + Delta-G solvation = -25292.122979 eV Core-core repulsion = 21522.706045 eV Total energy + Delta-G solvation = -3769.416934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19370 -39.43842 -37.76651 -36.74273 -36.34140 -34.17527 -33.91031 -31.65871 -30.87080 -29.43164 -27.77140 -26.65860 -24.19274 -23.85578 -22.19775 -21.68696 -21.14716 -20.13686 -18.34154 -17.44703 -17.36284 -16.95970 -16.40039 -16.03809 -15.52501 -15.34324 -14.91535 -14.86784 -14.40943 -14.02897 -13.95187 -13.60398 -13.36939 -12.88097 -12.80304 -12.71573 -12.50734 -12.44880 -12.24622 -12.09239 -11.82192 -11.60272 -11.35194 -11.22782 -11.19541 -11.06845 -10.71772 -10.67786 -10.45909 -10.30598 -9.98307 -9.75156 -9.52209 -9.27523 -7.62557 -7.52176 -6.92530 -4.51902 1.85762 2.13807 2.38445 2.53263 2.89059 2.95697 2.99968 3.02826 3.21409 3.38204 3.50358 3.81770 4.06836 4.13307 4.39012 4.44553 4.66636 4.77442 4.95096 5.04085 5.18128 5.28012 5.29182 5.51209 5.54084 5.56245 5.59827 5.62834 5.65681 5.97186 6.18285 6.24963 6.56544 6.74657 6.81929 6.92409 7.12051 7.14375 7.20500 7.45812 7.65165 7.74442 7.90532 7.94160 8.13683 8.48373 8.73155 8.80922 10.01416 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002683 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.171445 B =10432.563644 C =10674.995389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.211 3.789 3 C 0.050 3.950 4 C 0.471 3.529 5 O -0.496 6.496 6 O -0.342 6.342 7 C 0.135 3.865 8 C -0.240 4.240 9 C -0.062 4.062 10 C -0.230 4.230 11 C 0.120 3.880 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.784 5.784 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.171 4.171 21 C -0.074 4.074 22 C -0.134 4.134 23 C 0.059 3.941 24 O -0.375 6.375 25 C 0.059 3.941 26 C -0.145 4.145 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.283 0.717 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 9.470 13.828 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.109 4.109 3 C 0.045 3.955 4 C 0.311 3.689 5 O -0.384 6.384 6 O -0.258 6.258 7 C 0.064 3.936 8 C -0.241 4.241 9 C -0.080 4.080 10 C -0.250 4.250 11 C 0.117 3.883 12 C -0.483 4.483 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.409 5.409 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.190 4.190 21 C -0.092 4.092 22 C -0.173 4.173 23 C -0.018 4.018 24 O -0.294 6.294 25 C -0.017 4.017 26 C -0.184 4.184 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.941 9.295 13.914 16.759 hybrid contribution 0.118 -0.481 -1.007 1.123 sum 1.059 8.814 12.906 15.664 Atomic orbital electron populations 1.81245 1.11817 1.06693 1.07181 1.28148 0.93878 0.94610 0.94215 1.18184 0.83479 0.94628 0.99235 1.22662 0.78407 0.86078 0.81755 1.90675 1.35304 1.49619 1.62779 1.86735 1.68643 1.43703 1.26685 1.21852 0.97544 0.81279 0.92919 1.18616 1.00733 1.14166 0.90626 1.20387 0.94281 0.97525 0.95849 1.20951 1.02583 1.08966 0.92477 1.17699 0.90930 0.87033 0.92644 1.19706 0.95173 1.42726 0.90732 0.90111 1.25981 0.94427 0.91947 1.02037 1.69819 1.02820 1.32973 1.35252 0.86258 0.79945 0.79572 0.80705 1.19084 1.20158 1.18486 1.21301 0.99505 1.03473 0.94728 1.20529 0.97400 0.98148 0.93139 1.22264 1.04236 0.99873 0.90924 1.22677 0.98645 0.85255 0.95250 1.87977 1.71570 1.48151 1.21662 1.22676 0.98774 0.97353 0.82932 1.22383 1.03860 0.91770 1.00362 0.91474 0.91851 0.89399 0.88700 0.90560 0.86188 0.89206 0.87550 0.88866 0.92999 0.87316 0.92806 0.87169 0.87849 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.88 18.54 42.15 0.78 -5.10 16 2 C 0.21 2.71 11.62 -20.76 -0.24 2.47 16 3 C 0.05 0.55 0.67 -158.27 -0.11 0.44 16 4 C 0.47 6.74 6.53 36.01 0.24 6.98 16 5 O -0.50 -7.78 15.72 -18.76 -0.29 -8.08 16 6 O -0.34 -5.77 10.05 -39.26 -0.39 -6.16 16 7 C 0.14 2.43 5.58 36.01 0.20 2.63 16 8 C -0.24 -5.12 5.54 -104.33 -0.58 -5.70 16 9 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 10 C -0.23 -5.53 9.80 -38.87 -0.38 -5.92 16 11 C 0.12 3.09 5.58 -106.83 -0.60 2.49 16 12 C -0.45 -11.63 9.05 -37.74 -0.34 -11.97 16 13 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 14 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 15 N -0.78 -19.38 10.95 55.55 0.61 -18.77 16 16 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 20 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 21 C -0.07 -1.65 9.67 -39.66 -0.38 -2.03 16 22 C -0.13 -1.16 4.21 -26.59 -0.11 -1.27 16 23 C 0.06 0.44 6.61 37.21 0.25 0.69 16 24 O -0.38 -3.36 10.77 -35.23 -0.38 -3.74 16 25 C 0.06 0.48 6.61 37.21 0.25 0.72 16 26 C -0.15 -1.31 4.83 -26.59 -0.13 -1.44 16 27 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.06 1.09 8.07 -51.93 -0.42 0.68 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 32 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 0.87 8.02 -51.93 -0.42 0.45 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.46 7.38 -51.93 -0.38 0.07 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -28.74 352.92 -7.42 -36.16 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.28 Total: 4.05 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.75 Total: -16.53 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 1.39 Total: -23.87 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -1.07 Total: -17.98 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.74 -7.42 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776213898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.521 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds