Wall clock time and date at job start Tue Mar 31 2020 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50700 * 109.61409 * 25.77364 * 3 2 1 5 5 O 1.20836 * 119.99842 * 239.77459 * 4 3 2 6 6 O 1.34230 * 120.00177 * 59.77609 * 4 3 2 7 7 C 1.45198 * 116.99801 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47194 * 179.97438 * 7 6 4 9 9 C 1.38627 * 119.75393 * 269.73723 * 8 7 6 10 10 C 1.37618 * 120.25097 * 179.72267 * 9 8 7 11 11 C 1.40716 * 119.74159 * 0.56352 * 10 9 8 12 12 C 1.41395 * 120.24641 * 179.68961 * 11 10 9 13 13 H 1.08002 * 120.00065 * 24.40177 * 12 11 10 14 14 C 1.39940 * 120.00256 * 204.41417 * 12 11 10 15 15 N 1.30827 * 120.00034 * 17.84897 * 14 12 11 16 16 Si 1.86799 * 120.00050 * 197.85277 * 14 12 11 17 17 H 1.48501 * 109.47136 * 89.99579 * 16 14 12 18 18 H 1.48506 * 109.47003 * 209.99406 * 16 14 12 19 19 H 1.48494 * 109.47132 * 329.99691 * 16 14 12 20 20 C 1.40714 * 119.51362 * 359.70373 * 11 10 9 21 21 C 1.37616 * 119.74551 * 0.02562 * 20 11 10 22 22 C 1.53173 * 109.54384 * 265.54978 * 3 2 1 23 23 C 1.53097 * 109.16390 * 297.11570 * 22 3 2 24 24 O 1.42899 * 109.41255 * 302.38757 * 23 22 3 25 25 C 1.42911 * 114.09664 * 61.16225 * 24 23 22 26 26 C 1.53093 * 109.41143 * 298.83708 * 25 24 23 27 27 H 1.08998 * 109.47516 * 300.00569 * 7 6 4 28 28 H 1.09006 * 109.47202 * 60.00405 * 7 6 4 29 29 H 1.08001 * 119.87520 * 359.96834 * 9 8 7 30 30 H 1.07997 * 120.13122 * 180.27534 * 10 9 8 31 31 H 0.96996 * 119.99875 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.13374 * 179.97438 * 20 11 10 33 33 H 1.08000 * 119.88305 * 179.97438 * 21 20 11 34 34 H 1.09001 * 109.52220 * 177.20710 * 22 3 2 35 35 H 1.09003 * 109.52682 * 57.02003 * 22 3 2 36 36 H 1.08993 * 109.47998 * 62.37530 * 23 22 3 37 37 H 1.09002 * 109.47703 * 182.39617 * 23 22 3 38 38 H 1.09000 * 109.47959 * 58.81911 * 25 24 23 39 39 H 1.08994 * 109.47971 * 178.85872 * 25 24 23 40 40 H 1.09001 * 109.52524 * 177.51096 * 26 25 24 41 41 H 1.08993 * 109.52497 * 297.64116 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1145 -1.2774 -0.6172 5 8 3.8138 -2.0235 0.0265 6 8 2.7887 -1.5871 -1.8821 7 6 3.3126 -2.8336 -2.4114 8 6 2.8451 -3.0115 -3.8330 9 6 1.6557 -3.6763 -4.0880 10 6 1.2163 -3.8396 -5.3819 11 6 1.9855 -3.3392 -6.4487 12 6 1.5474 -3.5068 -7.7826 13 1 0.4971 -3.6446 -7.9927 14 6 2.4749 -3.4943 -8.8304 15 7 3.7458 -3.6791 -8.5813 16 14 1.8981 -3.2138 -10.5849 17 1 1.9135 -1.7594 -10.8844 18 1 2.8053 -3.9220 -11.5234 19 1 0.5172 -3.7368 -10.7416 20 6 3.1939 -2.6709 -6.1783 21 6 3.6110 -2.5143 -4.8762 22 6 3.1204 0.1129 1.4391 23 6 2.6668 1.4499 2.0313 24 8 3.1505 2.5190 1.2158 25 6 2.6663 2.4926 -0.1285 26 6 3.1199 1.1976 -0.8073 27 1 4.4020 -2.8094 -2.3870 28 1 2.9540 -3.6651 -1.8046 29 1 1.0696 -4.0641 -3.2679 30 1 0.2872 -4.3540 -5.5780 31 1 4.3887 -3.6701 -9.3076 32 1 3.7923 -2.2832 -6.9894 33 1 4.5384 -2.0021 -4.6662 34 1 4.2093 0.0635 1.4430 35 1 2.7156 -0.7053 2.0348 36 1 1.5778 1.4819 2.0645 37 1 3.0644 1.5538 3.0408 38 1 1.5772 2.5383 -0.1235 39 1 3.0638 3.3479 -0.6748 40 1 2.7147 1.1550 -1.8184 41 1 4.2087 1.1706 -0.8498 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776213898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:29 Heat of formation + Delta-G solvation = -106.011049 kcal Electronic energy + Delta-G solvation = -25292.744365 eV Core-core repulsion = 21522.706045 eV Total energy + Delta-G solvation = -3770.038320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24519 -40.41073 -39.46390 -37.76287 -37.66128 -35.72007 -35.03277 -32.63783 -32.26930 -31.25185 -29.22077 -27.77412 -25.60336 -24.75100 -23.02221 -22.96024 -22.85601 -21.85974 -19.45491 -19.28582 -18.23578 -18.15015 -17.33542 -17.16242 -17.00297 -16.32962 -16.00363 -15.84349 -15.70884 -15.45458 -15.39762 -14.74535 -14.69256 -14.29774 -13.91194 -13.88282 -13.80843 -13.69838 -13.48407 -13.30537 -13.11078 -13.07592 -12.82457 -12.48269 -12.44147 -12.23358 -11.95521 -11.93401 -11.74790 -11.56323 -11.38011 -11.30569 -11.05912 -10.68700 -9.45821 -9.36526 -8.71240 -6.41944 0.62519 0.76652 1.08600 1.22643 1.37426 1.38060 1.47741 1.50997 1.87443 2.18268 2.42010 2.67160 2.88726 3.23143 3.33830 3.49747 3.74045 3.79843 4.03091 4.09434 4.15141 4.21443 4.32798 4.45493 4.47785 4.53350 4.55497 4.60596 4.76072 4.93592 4.95337 4.98207 5.00649 5.09943 5.27488 5.31520 5.37968 5.62704 5.85766 6.03436 6.11377 6.11787 6.13103 6.30238 6.49541 6.62305 6.86563 6.94685 8.25631 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002683 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.171445 B =10432.563644 C =10674.995389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.227 3.773 3 C 0.054 3.946 4 C 0.474 3.526 5 O -0.506 6.506 6 O -0.354 6.354 7 C 0.140 3.860 8 C -0.232 4.232 9 C -0.068 4.068 10 C -0.248 4.248 11 C 0.089 3.911 12 C -0.494 4.494 13 H 0.076 0.924 14 C 0.037 3.963 15 N -0.815 5.815 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.260 1.260 20 C -0.193 4.193 21 C -0.075 4.075 22 C -0.131 4.131 23 C 0.059 3.941 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.292 0.708 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.134 0.866 38 H 0.046 0.954 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 10.509 15.047 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.091 4.091 3 C 0.050 3.950 4 C 0.314 3.686 5 O -0.394 6.394 6 O -0.270 6.270 7 C 0.068 3.932 8 C -0.233 4.233 9 C -0.086 4.086 10 C -0.268 4.268 11 C 0.086 3.914 12 C -0.522 4.522 13 H 0.095 0.905 14 C -0.179 4.179 15 N -0.440 5.440 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.190 1.190 19 H -0.184 1.184 20 C -0.212 4.212 21 C -0.093 4.093 22 C -0.170 4.170 23 C -0.017 4.017 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.183 4.183 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.152 0.848 38 H 0.065 0.935 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.762 10.337 15.161 18.434 hybrid contribution -0.093 -0.799 -1.178 1.426 sum 1.670 9.538 13.984 17.009 Atomic orbital electron populations 1.81262 1.13031 1.07904 1.08569 1.28471 0.94182 0.93467 0.93004 1.18423 0.82177 0.93548 1.00900 1.23151 0.77985 0.86775 0.80652 1.90675 1.35855 1.50166 1.62696 1.86682 1.69031 1.42983 1.28328 1.21675 0.98316 0.82228 0.90960 1.18964 0.99729 1.12155 0.92444 1.20690 0.94859 0.97290 0.95756 1.21137 1.02933 1.09531 0.93186 1.18043 0.91874 0.87973 0.93487 1.19920 0.95447 1.45158 0.91720 0.90536 1.26784 0.94287 0.90986 1.05857 1.69854 1.03844 1.33475 1.36866 0.85180 0.79433 0.79584 0.75416 1.18520 1.19015 1.18358 1.21292 0.99708 1.04635 0.95581 1.20804 0.98334 0.97771 0.92431 1.22356 1.04739 1.00762 0.89100 1.22798 0.98492 0.84254 0.96175 1.87978 1.71679 1.48570 1.21939 1.22743 0.98463 0.97468 0.82874 1.22472 1.04721 0.91298 0.99800 0.90031 0.90958 0.87078 0.88401 0.89759 0.87568 0.86755 0.86579 0.88490 0.93529 0.84789 0.93534 0.85091 0.88418 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -12.61 18.54 20.01 0.37 -12.24 16 2 C 0.23 5.57 11.62 89.44 1.04 6.61 16 3 C 0.05 1.08 0.67 -54.62 -0.04 1.05 16 4 C 0.47 12.53 6.53 71.24 0.47 12.99 16 5 O -0.51 -14.63 15.72 21.93 0.34 -14.28 16 6 O -0.35 -11.26 10.05 -51.41 -0.52 -11.77 16 7 C 0.14 4.73 5.58 71.24 0.40 5.13 16 8 C -0.23 -9.64 5.54 -19.67 -0.11 -9.75 16 9 C -0.07 -2.97 9.67 22.22 0.21 -2.75 16 10 C -0.25 -12.20 9.80 22.73 0.22 -11.98 16 11 C 0.09 4.73 5.58 -21.29 -0.12 4.62 16 12 C -0.49 -26.20 9.05 23.46 0.21 -25.99 16 13 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 14 C 0.04 1.82 5.14 85.25 0.44 2.26 16 15 N -0.82 -41.20 10.95 21.83 0.24 -40.96 16 16 Si 0.98 37.02 29.59 68.60 2.03 39.05 16 17 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 18 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 C -0.19 -9.85 8.70 22.73 0.20 -9.66 16 21 C -0.08 -3.33 9.67 22.22 0.21 -3.11 16 22 C -0.13 -1.92 4.21 30.68 0.13 -1.79 16 23 C 0.06 0.74 6.61 72.01 0.48 1.22 16 24 O -0.38 -5.82 10.77 -148.98 -1.60 -7.42 16 25 C 0.06 0.84 6.61 72.01 0.48 1.32 16 26 C -0.14 -2.29 4.83 30.69 0.15 -2.14 16 27 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 28 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 29 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 32 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 33 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.12 1.53 8.02 -2.39 -0.02 1.51 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 0.64 7.38 -2.39 -0.02 0.63 16 37 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 0.72 7.38 -2.39 -0.02 0.70 16 39 H 0.13 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -62.79 352.92 6.28 -56.50 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.05 Total: 23.10 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.37 Total: -31.98 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.61 Total: -53.20 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.78 Total: -33.48 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Total: -62.79 6.28 -56.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776213898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.508 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds