Wall clock time and date at job start Tue Mar 31 2020 12:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33473 * 126.72059 * 2 1 4 4 N 1.20653 * 113.40674 * 179.97438 * 3 2 1 5 5 C 1.30864 * 112.11862 * 359.97438 * 4 3 2 6 6 C 1.48319 * 127.44669 * 179.97438 * 5 4 3 7 7 C 1.39383 * 120.12562 * 180.02562 * 6 5 4 8 8 C 1.37987 * 119.87938 * 180.02562 * 7 6 5 9 9 C 1.38347 * 120.12224 * 0.02562 * 8 7 6 10 10 C 1.38310 * 120.25025 * 359.95986 * 9 8 7 11 11 C 1.38030 * 120.12264 * 359.76264 * 10 9 8 12 12 C 1.50700 * 120.06319 * 180.27941 * 11 10 9 13 13 C 1.37284 * 126.73288 * 179.97438 * 2 1 3 14 14 C 1.47133 * 128.58720 * 359.97438 * 13 2 1 15 15 O 1.21548 * 120.00042 * 270.02634 * 14 13 2 16 16 O 1.34778 * 120.00009 * 90.02275 * 14 13 2 17 17 C 1.45206 * 116.99994 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46910 * 30.00558 * 17 16 14 19 19 C 1.52989 * 109.47311 * 270.00389 * 17 16 14 20 20 C 1.50700 * 109.46884 * 150.00190 * 17 16 14 21 21 H 1.08000 * 120.00106 * 0.02562 * 20 17 16 22 22 C 1.37874 * 119.99910 * 180.02562 * 20 17 16 23 23 N 1.31519 * 120.00293 * 359.97438 * 22 20 17 24 24 Si 1.86807 * 120.00099 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47017 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47420 * 119.99759 * 24 22 20 27 27 H 1.48496 * 109.46977 * 239.99832 * 24 22 20 28 28 H 1.08999 * 109.47150 * 270.00387 * 1 2 3 29 29 H 1.08991 * 109.47203 * 30.00696 * 1 2 3 30 30 H 1.09004 * 109.46155 * 150.00595 * 1 2 3 31 31 H 1.08003 * 120.06436 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.94272 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.87668 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.93994 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47486 * 270.25592 * 12 11 10 36 36 H 1.09002 * 109.47038 * 30.25284 * 12 11 10 37 37 H 1.09002 * 109.47379 * 150.25334 * 12 11 10 38 38 H 1.09007 * 109.47107 * 299.99698 * 19 17 16 39 39 H 1.08997 * 109.47440 * 59.99916 * 19 17 16 40 40 H 1.08999 * 109.47404 * 180.02562 * 19 17 16 41 41 H 0.97000 * 120.00242 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3052 1.0699 0.0000 4 7 3.4793 0.7920 0.0005 5 6 3.6796 -0.5012 0.0015 6 6 4.9813 -1.2121 0.0018 7 6 5.0174 -2.6055 0.0023 8 6 6.2312 -3.2617 0.0031 9 6 7.4110 -2.5392 0.0039 10 6 7.3813 -1.1564 0.0031 11 6 6.1728 -0.4896 -0.0035 12 6 6.1420 1.0171 -0.0107 13 6 2.3282 -1.1002 0.0005 14 6 1.9553 -2.5235 0.0016 15 8 1.8012 -3.1106 1.0547 16 8 1.7846 -3.1764 -1.1650 17 6 1.4177 -4.5792 -1.0879 18 1 0.8406 -4.7544 -0.1799 19 6 2.6842 -5.4369 -1.0607 20 6 0.5869 -4.9479 -2.2900 21 1 0.3580 -4.2027 -3.0374 22 6 0.1192 -6.2367 -2.4356 23 7 0.3983 -7.1444 -1.5258 24 14 -0.9100 -6.6940 -3.9261 25 1 -1.0800 -5.5017 -4.7949 26 1 -0.2263 -7.7693 -4.6887 27 1 -2.2422 -7.1743 -3.4792 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8898 -0.5139 30 1 -0.3632 -0.8901 -0.5138 31 1 4.0969 -3.1706 0.0021 32 1 6.2604 -4.3414 0.0039 33 1 8.3589 -3.0569 0.0050 34 1 8.3054 -0.5974 0.0034 35 1 6.1362 1.3854 1.0151 36 1 7.0236 1.3960 -0.5278 37 1 5.2440 1.3597 -0.5248 38 1 3.2612 -5.2617 -1.9688 39 1 3.2851 -5.1702 -0.1913 40 1 2.4088 -6.4899 -1.0033 41 1 0.0695 -8.0512 -1.6284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796707643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:29 Heat of formation + Delta-G solvation = -4.701931 kcal Electronic energy + Delta-G solvation = -26368.522378 eV Core-core repulsion = 22602.877151 eV Total energy + Delta-G solvation = -3765.645227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.81373 -39.69706 -39.21411 -35.86576 -34.37377 -33.75686 -33.27912 -32.50982 -30.52807 -29.70649 -28.09048 -26.99446 -25.49456 -25.16142 -23.30970 -21.82390 -21.59315 -20.13933 -19.61615 -17.83370 -17.70250 -16.92549 -16.66398 -16.25486 -15.63424 -15.20618 -15.10494 -14.70717 -14.47546 -13.92919 -13.70354 -13.33243 -13.28285 -13.26326 -13.01825 -12.83979 -12.37491 -12.21876 -12.08700 -11.94941 -11.46372 -11.30609 -11.18216 -11.11969 -10.92307 -10.77250 -10.70935 -10.43226 -10.36133 -10.03054 -9.69225 -9.36010 -8.99197 -8.78192 -8.57029 -8.47732 -6.25543 -4.32831 0.76487 1.33943 1.37280 2.30809 2.50190 2.80846 3.19539 3.26765 3.31239 3.51559 3.81061 3.98135 4.20947 4.29540 4.80965 4.84555 4.90710 5.03049 5.07832 5.18543 5.24687 5.32302 5.35792 5.46691 5.58699 5.62687 5.65439 5.73773 5.82329 5.90469 5.96928 6.23397 6.42788 6.48539 6.52320 6.55061 6.78082 6.78559 6.91748 6.97822 7.48248 7.61382 7.80430 8.03192 8.18319 8.44996 8.77430 9.32949 10.81883 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004428 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.680894 B = 6321.763609 C = 7724.174052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 O 0.096 5.904 4 N -0.347 5.347 5 C 0.105 3.895 6 C -0.033 4.033 7 C -0.079 4.079 8 C -0.121 4.121 9 C -0.101 4.101 10 C -0.128 4.128 11 C -0.054 4.054 12 C -0.126 4.126 13 C -0.215 4.215 14 C 0.536 3.464 15 O -0.499 6.499 16 O -0.343 6.343 17 C 0.213 3.787 18 H 0.049 0.951 19 C -0.157 4.157 20 C -0.522 4.522 21 H 0.070 0.930 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.912 3.088 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.102 0.898 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.259 13.289 2.935 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 O 0.035 5.965 4 N -0.054 5.054 5 C -0.054 4.054 6 C -0.034 4.034 7 C -0.098 4.098 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.146 4.146 11 C -0.056 4.056 12 C -0.183 4.183 13 C -0.221 4.221 14 C 0.378 3.622 15 O -0.388 6.388 16 O -0.259 6.259 17 C 0.161 3.839 18 H 0.067 0.933 19 C -0.214 4.214 20 C -0.559 4.559 21 H 0.088 0.912 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.738 3.262 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.121 0.879 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.902 13.963 3.251 16.876 hybrid contribution -0.767 -1.329 -0.617 1.653 sum 8.135 12.635 2.634 15.256 Atomic orbital electron populations 1.20548 0.82732 1.05686 1.04862 1.24502 0.96014 0.84620 0.98457 1.84483 1.11296 1.32951 1.67785 1.73909 0.95292 1.15356 1.20795 1.22852 0.92719 0.88502 1.01293 1.17542 0.88073 0.92480 1.05305 1.21389 0.99364 0.92714 0.96349 1.21104 0.91746 1.00542 1.00542 1.21282 0.98306 0.94053 0.98284 1.20939 0.96932 0.94411 1.02346 1.19962 0.91785 0.96437 0.97398 1.21106 1.03870 0.90447 1.02828 1.21174 0.92585 0.93588 1.14706 1.19458 0.74030 0.85007 0.83717 1.90857 1.46890 1.67997 1.33098 1.86695 1.77637 1.30514 1.31028 1.20784 0.93720 0.69814 0.99551 0.93293 1.22206 0.96947 1.04565 0.97717 1.21030 1.32192 0.96102 1.06622 0.91150 1.24875 0.96174 0.95667 0.97105 1.69898 1.44964 1.03538 1.34142 0.86218 0.79575 0.78613 0.81755 1.19431 1.20654 1.20683 0.88566 0.88903 0.88088 0.85379 0.85112 0.85589 0.85574 0.91028 0.91686 0.88981 0.94177 0.96468 0.87945 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.32 36.01 0.37 -0.50 16 2 C 0.03 0.39 7.54 -34.65 -0.26 0.13 16 3 O 0.10 1.38 11.04 18.70 0.21 1.58 16 4 N -0.35 -5.41 8.71 34.61 0.30 -5.11 16 5 C 0.10 1.82 7.11 -80.21 -0.57 1.25 16 6 C -0.03 -0.55 5.88 -104.91 -0.62 -1.17 16 7 C -0.08 -1.36 9.57 -39.25 -0.38 -1.74 16 8 C -0.12 -1.74 10.03 -39.63 -0.40 -2.14 16 9 C -0.10 -1.20 10.04 -39.51 -0.40 -1.60 16 10 C -0.13 -1.53 9.69 -39.63 -0.38 -1.91 16 11 C -0.05 -0.76 5.91 -104.28 -0.62 -1.38 16 12 C -0.13 -1.50 9.21 36.01 0.33 -1.17 16 13 C -0.22 -3.94 6.32 -102.72 -0.65 -4.59 16 14 C 0.54 11.57 5.05 34.34 0.17 11.74 16 15 O -0.50 -11.84 16.29 -19.30 -0.31 -12.15 16 16 O -0.34 -8.14 9.85 -40.70 -0.40 -8.54 16 17 C 0.21 5.56 2.56 -27.89 -0.07 5.49 16 18 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 19 C -0.16 -3.83 9.31 37.15 0.35 -3.48 16 20 C -0.52 -14.21 8.90 -34.44 -0.31 -14.51 16 21 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 24 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.13 2.53 4.33 -52.48 -0.23 2.31 16 32 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.09 1.22 5.24 -51.93 -0.27 0.95 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.38 7.27 -51.93 -0.38 0.00 16 40 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -30.74 349.94 -7.75 -38.49 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.91 Total: 2.73 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -3.52 Total: -13.96 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.93 Total: -28.93 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.51 Total: -19.11 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.74 -7.75 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796707643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.791 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds