Wall clock time and date at job start Tue Mar 31 2020 12:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.33473 * 126.72059 * 2 1 4 4 N 1.20653 * 113.40674 * 179.97438 * 3 2 1 5 5 C 1.30864 * 112.11862 * 359.97438 * 4 3 2 6 6 C 1.48319 * 127.44669 * 179.97438 * 5 4 3 7 7 C 1.39383 * 120.12562 * 180.02562 * 6 5 4 8 8 C 1.37987 * 119.87938 * 180.02562 * 7 6 5 9 9 C 1.38347 * 120.12224 * 0.02562 * 8 7 6 10 10 C 1.38310 * 120.25025 * 359.95986 * 9 8 7 11 11 C 1.38030 * 120.12264 * 359.76264 * 10 9 8 12 12 C 1.50700 * 120.06319 * 180.27941 * 11 10 9 13 13 C 1.37284 * 126.73288 * 179.97438 * 2 1 3 14 14 C 1.47133 * 128.58720 * 359.97438 * 13 2 1 15 15 O 1.21548 * 120.00042 * 270.02634 * 14 13 2 16 16 O 1.34778 * 120.00009 * 90.02275 * 14 13 2 17 17 C 1.45206 * 116.99994 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.46910 * 30.00558 * 17 16 14 19 19 C 1.52989 * 109.47311 * 270.00389 * 17 16 14 20 20 C 1.50700 * 109.46884 * 150.00190 * 17 16 14 21 21 H 1.08000 * 120.00106 * 0.02562 * 20 17 16 22 22 C 1.37874 * 119.99910 * 180.02562 * 20 17 16 23 23 N 1.31519 * 120.00293 * 359.97438 * 22 20 17 24 24 Si 1.86807 * 120.00099 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47017 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47420 * 119.99759 * 24 22 20 27 27 H 1.48496 * 109.46977 * 239.99832 * 24 22 20 28 28 H 1.08999 * 109.47150 * 270.00387 * 1 2 3 29 29 H 1.08991 * 109.47203 * 30.00696 * 1 2 3 30 30 H 1.09004 * 109.46155 * 150.00595 * 1 2 3 31 31 H 1.08003 * 120.06436 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.94272 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.87668 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.93994 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47486 * 270.25592 * 12 11 10 36 36 H 1.09002 * 109.47038 * 30.25284 * 12 11 10 37 37 H 1.09002 * 109.47379 * 150.25334 * 12 11 10 38 38 H 1.09007 * 109.47107 * 299.99698 * 19 17 16 39 39 H 1.08997 * 109.47440 * 59.99916 * 19 17 16 40 40 H 1.08999 * 109.47404 * 180.02562 * 19 17 16 41 41 H 0.97000 * 120.00242 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3052 1.0699 0.0000 4 7 3.4793 0.7920 0.0005 5 6 3.6796 -0.5012 0.0015 6 6 4.9813 -1.2121 0.0018 7 6 5.0174 -2.6055 0.0023 8 6 6.2312 -3.2617 0.0031 9 6 7.4110 -2.5392 0.0039 10 6 7.3813 -1.1564 0.0031 11 6 6.1728 -0.4896 -0.0035 12 6 6.1420 1.0171 -0.0107 13 6 2.3282 -1.1002 0.0005 14 6 1.9553 -2.5235 0.0016 15 8 1.8012 -3.1106 1.0547 16 8 1.7846 -3.1764 -1.1650 17 6 1.4177 -4.5792 -1.0879 18 1 0.8406 -4.7544 -0.1799 19 6 2.6842 -5.4369 -1.0607 20 6 0.5869 -4.9479 -2.2900 21 1 0.3580 -4.2027 -3.0374 22 6 0.1192 -6.2367 -2.4356 23 7 0.3983 -7.1444 -1.5258 24 14 -0.9100 -6.6940 -3.9261 25 1 -1.0800 -5.5017 -4.7949 26 1 -0.2263 -7.7693 -4.6887 27 1 -2.2422 -7.1743 -3.4792 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8898 -0.5139 30 1 -0.3632 -0.8901 -0.5138 31 1 4.0969 -3.1706 0.0021 32 1 6.2604 -4.3414 0.0039 33 1 8.3589 -3.0569 0.0050 34 1 8.3054 -0.5974 0.0034 35 1 6.1362 1.3854 1.0151 36 1 7.0236 1.3960 -0.5278 37 1 5.2440 1.3597 -0.5248 38 1 3.2612 -5.2617 -1.9688 39 1 3.2851 -5.1702 -0.1913 40 1 2.4088 -6.4899 -1.0033 41 1 0.0695 -8.0512 -1.6284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796707643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:27 Heat of formation + Delta-G solvation = -19.864913 kcal Electronic energy + Delta-G solvation = -26369.179895 eV Core-core repulsion = 22602.877151 eV Total energy + Delta-G solvation = -3766.302743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -46.06657 -41.40926 -40.38700 -37.74737 -35.64007 -35.34777 -34.88146 -33.56483 -31.85054 -31.52515 -29.20880 -28.02428 -27.50883 -26.64400 -24.57940 -23.30312 -22.91444 -21.72228 -20.93629 -19.39689 -19.04351 -18.58441 -18.24107 -17.74850 -17.16818 -16.82177 -16.45615 -16.17085 -15.88400 -15.01784 -14.91710 -14.84166 -14.47741 -14.34499 -14.27522 -14.13955 -13.90219 -13.82689 -13.29476 -13.18544 -13.08040 -13.02980 -12.85722 -12.55196 -12.42581 -12.19556 -12.16424 -11.99558 -11.92221 -11.73796 -11.67328 -11.06585 -10.65131 -10.60206 -9.86321 -9.58102 -8.31352 -6.48523 -0.39128 0.08473 0.28683 0.82016 1.08547 1.40655 1.42490 1.48643 1.57985 2.03309 2.38086 2.71305 2.72409 2.99226 2.99970 3.66736 3.74391 3.78286 3.81607 4.02049 4.10998 4.23380 4.32426 4.44720 4.46728 4.52855 4.63633 4.69436 4.74096 4.75404 4.76195 4.79248 4.91461 4.99325 5.03307 5.27864 5.37041 5.41466 5.44220 5.47990 5.53754 5.78584 5.90171 5.96339 6.51243 6.74632 6.95142 7.22511 8.76668 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.004428 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.680894 B = 6321.763609 C = 7724.174052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.057 3.943 3 O 0.110 5.890 4 N -0.342 5.342 5 C 0.097 3.903 6 C -0.062 4.062 7 C -0.112 4.112 8 C -0.133 4.133 9 C -0.089 4.089 10 C -0.119 4.119 11 C -0.060 4.060 12 C -0.123 4.123 13 C -0.266 4.266 14 C 0.548 3.452 15 O -0.530 6.530 16 O -0.351 6.351 17 C 0.217 3.783 18 H 0.014 0.986 19 C -0.141 4.141 20 C -0.548 4.548 21 H 0.067 0.933 22 C 0.021 3.979 23 N -0.914 5.914 24 Si 0.982 3.018 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.024 0.976 40 H 0.086 0.914 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 15.021 2.035 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 O 0.050 5.950 4 N -0.048 5.048 5 C -0.062 4.062 6 C -0.063 4.063 7 C -0.131 4.131 8 C -0.151 4.151 9 C -0.107 4.107 10 C -0.136 4.136 11 C -0.062 4.062 12 C -0.179 4.179 13 C -0.272 4.272 14 C 0.392 3.608 15 O -0.421 6.421 16 O -0.267 6.267 17 C 0.165 3.835 18 H 0.032 0.968 19 C -0.199 4.199 20 C -0.586 4.586 21 H 0.085 0.915 22 C -0.179 4.179 23 N -0.552 5.552 24 Si 0.805 3.195 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.136 0.864 29 H 0.151 0.849 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.155 0.845 33 H 0.183 0.817 34 H 0.185 0.815 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.104 0.896 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.137 15.718 2.360 18.851 hybrid contribution -1.089 -1.806 -0.274 2.127 sum 9.048 13.912 2.085 16.726 Atomic orbital electron populations 1.20825 0.79820 1.06826 1.06548 1.25089 0.97271 0.83403 0.94891 1.84488 1.11040 1.32400 1.67120 1.73919 0.95667 1.14292 1.20921 1.23071 0.92789 0.88902 1.01403 1.17767 0.88991 0.92420 1.07146 1.21282 0.99134 0.93314 0.99397 1.21307 0.91840 1.01172 1.00770 1.21707 0.98677 0.94352 0.95936 1.21430 0.97567 0.94606 1.00028 1.20318 0.91521 0.97596 0.96722 1.21116 1.04450 0.88959 1.03368 1.21047 0.94468 0.92324 1.19344 1.19805 0.72455 0.86080 0.82476 1.90813 1.48316 1.69151 1.33815 1.86673 1.78048 1.29513 1.32474 1.20523 0.93835 0.71344 0.97835 0.96789 1.22002 0.96498 1.03168 0.98232 1.21260 1.33493 0.96791 1.07013 0.91475 1.25785 0.96924 0.95183 1.00021 1.70008 1.45433 1.03996 1.35755 0.85143 0.77916 0.78465 0.77948 1.18801 1.19734 1.19853 0.86400 0.84891 0.89677 0.89032 0.84523 0.81700 0.81537 0.90386 0.88813 0.90555 0.93740 0.95742 0.89563 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.32 71.24 0.74 -0.96 16 2 C 0.06 1.65 7.54 25.46 0.19 1.84 16 3 O 0.11 3.05 11.04 77.17 0.85 3.90 16 4 N -0.34 -10.53 8.71 -44.97 -0.39 -10.92 16 5 C 0.10 3.45 7.11 44.51 0.32 3.76 16 6 C -0.06 -2.13 5.88 -20.05 -0.12 -2.25 16 7 C -0.11 -4.07 9.57 22.49 0.22 -3.85 16 8 C -0.13 -3.83 10.03 22.24 0.22 -3.61 16 9 C -0.09 -1.88 10.04 22.31 0.22 -1.66 16 10 C -0.12 -2.44 9.69 22.24 0.22 -2.23 16 11 C -0.06 -1.59 5.91 -19.65 -0.12 -1.71 16 12 C -0.12 -2.64 9.21 71.24 0.66 -1.99 16 13 C -0.27 -10.16 6.32 -18.63 -0.12 -10.27 16 14 C 0.55 25.26 5.05 70.16 0.35 25.61 16 15 O -0.53 -27.06 16.29 19.68 0.32 -26.74 16 16 O -0.35 -17.75 9.85 -56.89 -0.56 -18.31 16 17 C 0.22 11.99 2.56 29.84 0.08 12.07 16 18 H 0.01 0.87 7.16 -2.39 -0.02 0.85 16 19 C -0.14 -7.30 9.31 71.98 0.67 -6.63 16 20 C -0.55 -30.87 8.90 25.60 0.23 -30.65 16 21 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 22 C 0.02 1.14 5.30 84.65 0.45 1.59 16 23 N -0.91 -51.53 11.32 21.45 0.24 -51.28 16 24 Si 0.98 42.14 29.54 68.60 2.03 44.17 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 2.07 8.10 -2.39 -0.02 2.05 16 31 H 0.09 3.96 4.33 -2.91 -0.01 3.95 16 32 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.08 1.92 5.24 -2.39 -0.01 1.91 16 38 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.02 1.17 7.27 -2.39 -0.02 1.15 16 40 H 0.09 4.73 6.07 -2.39 -0.01 4.71 16 41 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -70.97 349.94 7.76 -63.20 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.07 Total: 16.91 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.20 Total: -20.93 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.15 Total: -62.21 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: 0.61 Total: -41.15 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -70.97 7.76 -63.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796707643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.340 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds