Wall clock time and date at job start Tue Mar 31 2020 11:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39791 * 120.06822 * 100.65948 * 3 2 1 5 5 C 1.38088 * 120.19941 * 179.97438 * 4 3 2 6 6 C 1.38032 * 120.33316 * 359.74663 * 5 4 3 7 7 C 1.39935 * 120.12651 * 0.51003 * 6 5 4 8 8 C 1.47192 * 120.09902 * 179.77048 * 7 6 5 9 9 O 1.21252 * 120.00361 * 179.72477 * 8 7 6 10 10 C 1.50704 * 119.99838 * 359.71751 * 8 7 6 11 11 O 1.45196 * 109.47016 * 180.02562 * 10 8 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 8 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47274 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46977 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46630 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46793 * 120.00131 * 22 20 18 25 25 H 1.48492 * 109.47108 * 240.00016 * 22 20 18 26 26 C 1.39293 * 120.06805 * 280.63571 * 3 2 1 27 27 H 1.08004 * 119.90285 * 359.95757 * 4 3 2 28 28 H 1.07995 * 119.83938 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.94082 * 180.25173 * 6 5 4 30 30 H 1.08996 * 109.46943 * 60.00220 * 10 8 7 31 31 H 1.08999 * 109.47285 * 300.00360 * 10 8 7 32 32 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 33 33 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 34 34 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 35 35 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 36 36 H 1.08999 * 109.46783 * 300.00124 * 16 15 14 37 37 H 1.09000 * 109.46608 * 60.00231 * 16 15 14 38 38 H 1.08988 * 109.47430 * 300.00270 * 17 16 15 39 39 H 1.08997 * 109.46441 * 60.00731 * 17 16 15 40 40 H 0.97000 * 119.99712 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.16665 * 0.04504 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2247 -1.1889 5 6 4.6492 0.2265 -1.1919 6 6 5.3491 0.0124 -0.0216 7 6 4.6621 -0.2187 1.1754 8 6 5.4091 -0.4519 2.4220 9 8 4.8120 -0.6470 3.4592 10 6 6.9161 -0.4483 2.4093 11 8 7.4119 -0.7001 3.7506 12 6 8.7442 -0.7299 3.9121 13 8 9.4718 -0.5512 2.9643 14 6 9.3323 -0.9853 5.2759 15 6 10.8594 -0.9670 5.1843 16 6 11.4565 -1.2257 6.5691 17 6 12.9837 -1.2080 6.4774 18 6 13.5718 -1.4621 7.8414 19 1 12.9214 -1.6208 8.6888 20 6 14.9402 -1.4921 8.0074 21 7 15.7322 -1.2984 6.9756 22 14 15.6692 -1.8078 9.6982 23 1 14.5734 -1.9936 10.6829 24 1 16.5079 -3.0325 9.6547 25 1 16.5059 -0.6489 10.1007 26 6 3.2660 -0.2215 1.1848 27 1 2.7277 0.3968 -2.1080 28 1 5.1843 0.3998 -2.1138 29 1 6.4290 0.0191 -0.0305 30 1 7.2742 0.5220 2.0653 31 1 7.2756 -1.2274 1.7372 32 1 9.0007 -0.2092 5.9657 33 1 9.0013 -1.9586 5.6379 34 1 11.1914 -1.7429 4.4944 35 1 11.1901 0.0066 4.8225 36 1 11.1245 -0.4495 7.2586 37 1 11.1259 -2.1991 6.9312 38 1 13.3153 -1.9843 5.7880 39 1 13.3146 -0.2347 6.1151 40 1 16.6950 -1.3198 7.0924 41 1 2.7299 -0.3955 2.1060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:34 Heat of formation + Delta-G solvation = -86.475875 kcal Electronic energy + Delta-G solvation = -23231.535511 eV Core-core repulsion = 19462.344300 eV Total energy + Delta-G solvation = -3769.191211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05781 -40.35273 -39.00614 -36.98136 -36.68435 -35.01709 -32.84103 -32.67103 -32.00743 -30.27255 -29.09806 -25.92605 -24.91495 -24.08008 -22.70638 -21.35592 -20.67640 -20.06175 -18.97353 -17.79978 -17.08654 -17.08009 -16.94145 -16.20349 -15.95710 -15.88618 -15.54806 -14.87919 -14.75263 -14.55786 -14.39819 -14.38386 -13.80099 -13.39466 -13.31465 -12.95659 -12.84458 -12.66561 -12.61386 -12.29963 -12.05890 -11.78182 -11.68305 -11.06635 -11.02874 -10.67978 -10.62410 -10.50631 -10.48545 -10.28897 -9.86803 -9.78163 -9.67147 -9.30786 -9.02423 -8.33105 -5.97907 -4.00274 -0.24576 0.19070 1.56241 2.01019 2.15460 2.23152 2.38475 3.12049 3.14359 3.32241 3.39719 3.43534 3.44547 4.00280 4.15837 4.19925 4.35537 4.47469 4.58106 4.62841 4.64424 4.77999 4.89552 5.06933 5.20352 5.24158 5.37862 5.37971 5.42581 5.46347 5.67499 5.87871 6.02736 6.12800 6.21948 6.43850 6.74172 6.84181 6.86007 6.91946 7.14328 7.66161 7.71051 7.85193 8.02880 8.44903 9.07507 9.63793 11.13422 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.047652 B = 0.001561 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.446560 B =17937.138219 C =18488.231278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.251 3.749 3 C -0.037 4.037 4 C -0.039 4.039 5 C -0.127 4.127 6 C -0.045 4.045 7 C -0.162 4.162 8 C 0.397 3.603 9 O -0.418 6.418 10 C 0.019 3.981 11 O -0.343 6.343 12 C 0.462 3.538 13 O -0.504 6.504 14 C -0.111 4.111 15 C -0.108 4.108 16 C -0.111 4.111 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.011 4.011 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.672 3.532 -18.900 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.064 4.064 3 C -0.040 4.040 4 C -0.059 4.059 5 C -0.145 4.145 6 C -0.064 4.064 7 C -0.163 4.163 8 C 0.272 3.728 9 O -0.290 6.290 10 C -0.056 4.056 11 O -0.260 6.260 12 C 0.306 3.694 13 O -0.390 6.390 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.032 4.032 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.382 3.492 -18.686 32.517 hybrid contribution 1.022 -0.108 0.577 1.179 sum -25.360 3.385 -18.109 31.345 Atomic orbital electron populations 1.81310 1.11903 1.08208 1.06693 1.25548 0.92477 0.94111 0.94310 1.15868 0.84695 1.08342 0.95090 1.21513 0.94604 0.93046 0.96770 1.21149 0.93474 1.00849 0.98980 1.21817 1.01159 0.92149 0.91272 1.20158 0.93749 1.07523 0.94916 1.22129 0.89707 0.73397 0.87616 1.90611 1.71603 1.33586 1.33215 1.23207 0.93005 1.04714 0.84673 1.86633 1.25542 1.82731 1.31115 1.24369 0.79478 0.72500 0.93081 1.90676 1.60680 1.45017 1.42651 1.21642 0.98074 1.05274 0.89867 1.21591 0.89614 1.03151 1.00216 1.21659 0.99707 1.00256 0.93214 1.19102 0.88280 0.97355 0.97014 1.21318 0.91487 1.48420 0.94670 0.92615 1.25036 0.97392 0.95438 0.96654 1.69980 1.03579 1.50247 1.29662 0.86553 0.79170 0.77792 0.84583 1.19739 1.21055 1.21051 1.21434 0.92940 0.91264 0.97533 0.84181 0.83709 0.83835 0.87414 0.87416 0.87629 0.87628 0.91488 0.91490 0.93138 0.93145 0.96527 0.96530 0.93094 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -3.94 18.54 41.84 0.78 -3.17 16 2 C 0.25 1.76 15.32 -22.47 -0.34 1.41 16 3 C -0.04 -0.17 5.72 -107.00 -0.61 -0.78 16 4 C -0.04 -0.10 9.75 -39.06 -0.38 -0.48 16 5 C -0.13 -0.22 10.01 -39.71 -0.40 -0.61 16 6 C -0.05 -0.12 9.47 -39.02 -0.37 -0.49 16 7 C -0.16 -0.84 5.86 -105.11 -0.62 -1.45 16 8 C 0.40 3.08 7.20 -30.67 -0.22 2.86 16 9 O -0.42 -4.78 16.49 -14.08 -0.23 -5.01 16 10 C 0.02 0.15 4.55 36.01 0.16 0.31 16 11 O -0.34 -3.97 9.75 -45.92 -0.45 -4.41 16 12 C 0.46 5.98 7.96 36.01 0.29 6.27 16 13 O -0.50 -7.62 15.73 -18.75 -0.29 -7.91 16 14 C -0.11 -1.40 5.81 -27.89 -0.16 -1.56 16 15 C -0.11 -1.77 4.50 -26.73 -0.12 -1.90 16 16 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.01 -0.06 9.30 -38.68 -0.36 -0.42 16 27 H 0.14 0.08 8.06 -52.48 -0.42 -0.34 16 28 H 0.15 -0.09 8.06 -52.49 -0.42 -0.51 16 29 H 0.14 0.13 7.03 -52.49 -0.37 -0.24 16 30 H 0.11 0.64 8.07 -51.93 -0.42 0.23 16 31 H 0.11 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.45 8.14 -51.94 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.15 0.84 7.64 -52.49 -0.40 0.44 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -35.73 372.85 -8.06 -43.79 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: -5.37 Total: -6.89 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.82 Total: -12.33 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 1.51 Total: -29.45 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.97 Total: -17.34 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.73 -8.06 -43.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.681 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds