Wall clock time and date at job start Tue Mar 31 2020 11:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39791 * 120.06822 * 100.65948 * 3 2 1 5 5 C 1.38088 * 120.19941 * 179.97438 * 4 3 2 6 6 C 1.38032 * 120.33316 * 359.74663 * 5 4 3 7 7 C 1.39935 * 120.12651 * 0.51003 * 6 5 4 8 8 C 1.47192 * 120.09902 * 179.77048 * 7 6 5 9 9 O 1.21252 * 120.00361 * 179.72477 * 8 7 6 10 10 C 1.50704 * 119.99838 * 359.71751 * 8 7 6 11 11 O 1.45196 * 109.47016 * 180.02562 * 10 8 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 8 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47274 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46977 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46630 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46793 * 120.00131 * 22 20 18 25 25 H 1.48492 * 109.47108 * 240.00016 * 22 20 18 26 26 C 1.39293 * 120.06805 * 280.63571 * 3 2 1 27 27 H 1.08004 * 119.90285 * 359.95757 * 4 3 2 28 28 H 1.07995 * 119.83938 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.94082 * 180.25173 * 6 5 4 30 30 H 1.08996 * 109.46943 * 60.00220 * 10 8 7 31 31 H 1.08999 * 109.47285 * 300.00360 * 10 8 7 32 32 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 33 33 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 34 34 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 35 35 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 36 36 H 1.08999 * 109.46783 * 300.00124 * 16 15 14 37 37 H 1.09000 * 109.46608 * 60.00231 * 16 15 14 38 38 H 1.08988 * 109.47430 * 300.00270 * 17 16 15 39 39 H 1.08997 * 109.46441 * 60.00731 * 17 16 15 40 40 H 0.97000 * 119.99712 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.16665 * 0.04504 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2247 -1.1889 5 6 4.6492 0.2265 -1.1919 6 6 5.3491 0.0124 -0.0216 7 6 4.6621 -0.2187 1.1754 8 6 5.4091 -0.4519 2.4220 9 8 4.8120 -0.6470 3.4592 10 6 6.9161 -0.4483 2.4093 11 8 7.4119 -0.7001 3.7506 12 6 8.7442 -0.7299 3.9121 13 8 9.4718 -0.5512 2.9643 14 6 9.3323 -0.9853 5.2759 15 6 10.8594 -0.9670 5.1843 16 6 11.4565 -1.2257 6.5691 17 6 12.9837 -1.2080 6.4774 18 6 13.5718 -1.4621 7.8414 19 1 12.9214 -1.6208 8.6888 20 6 14.9402 -1.4921 8.0074 21 7 15.7322 -1.2984 6.9756 22 14 15.6692 -1.8078 9.6982 23 1 14.5734 -1.9936 10.6829 24 1 16.5079 -3.0325 9.6547 25 1 16.5059 -0.6489 10.1007 26 6 3.2660 -0.2215 1.1848 27 1 2.7277 0.3968 -2.1080 28 1 5.1843 0.3998 -2.1138 29 1 6.4290 0.0191 -0.0305 30 1 7.2742 0.5220 2.0653 31 1 7.2756 -1.2274 1.7372 32 1 9.0007 -0.2092 5.9657 33 1 9.0013 -1.9586 5.6379 34 1 11.1914 -1.7429 4.4944 35 1 11.1901 0.0066 4.8225 36 1 11.1245 -0.4495 7.2586 37 1 11.1259 -2.1991 6.9312 38 1 13.3153 -1.9843 5.7880 39 1 13.3146 -0.2347 6.1151 40 1 16.6950 -1.3198 7.0924 41 1 2.7299 -0.3955 2.1060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:34 Heat of formation + Delta-G solvation = -105.485022 kcal Electronic energy + Delta-G solvation = -23232.359810 eV Core-core repulsion = 19462.344300 eV Total energy + Delta-G solvation = -3770.015510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80459 -41.00965 -39.56936 -37.68201 -37.54288 -36.58475 -34.63962 -33.23856 -32.30172 -31.74899 -29.94590 -27.57790 -25.31223 -24.86150 -24.00399 -22.05127 -21.76398 -21.43993 -19.50604 -18.72477 -18.35839 -17.93323 -17.66691 -17.36312 -16.57752 -16.49180 -16.48919 -16.36591 -15.72819 -15.44149 -15.13364 -14.91073 -14.55566 -14.34253 -14.30286 -13.96344 -13.87175 -13.61702 -13.49297 -13.28248 -13.27658 -12.88568 -12.84482 -12.35677 -12.32347 -12.16721 -12.15475 -11.86380 -11.67216 -11.35316 -11.28345 -11.08501 -10.90201 -10.52744 -10.16362 -10.10063 -8.16969 -6.28026 -0.58211 -0.16941 1.12674 1.17558 1.37538 1.42560 1.42751 1.54223 1.56262 1.91034 2.43673 2.62477 2.78253 2.88949 3.16349 3.66289 3.77424 3.83705 3.98459 4.02724 4.06633 4.08043 4.14091 4.16258 4.32038 4.54820 4.61919 4.66539 4.82441 4.83059 4.89390 5.06395 5.18742 5.18935 5.22284 5.25326 5.35138 5.41521 5.59728 5.66730 5.81538 5.91352 6.28103 6.28823 6.33760 6.71073 6.90600 7.41486 8.95165 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.047652 B = 0.001561 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.446560 B =17937.138219 C =18488.231278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.276 3.724 3 C -0.050 4.050 4 C -0.024 4.024 5 C -0.118 4.118 6 C -0.032 4.032 7 C -0.176 4.176 8 C 0.406 3.594 9 O -0.467 6.467 10 C 0.009 3.991 11 O -0.352 6.352 12 C 0.470 3.530 13 O -0.530 6.530 14 C -0.106 4.106 15 C -0.098 4.098 16 C -0.099 4.099 17 C 0.018 3.982 18 C -0.542 4.542 19 H 0.064 0.936 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.018 4.018 27 H 0.164 0.836 28 H 0.179 0.821 29 H 0.167 0.833 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.061 0.939 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.262 0.738 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.782 3.670 -19.624 31.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.038 4.038 3 C -0.054 4.054 4 C -0.044 4.044 5 C -0.135 4.135 6 C -0.050 4.050 7 C -0.177 4.177 8 C 0.284 3.716 9 O -0.343 6.343 10 C -0.065 4.065 11 O -0.269 6.269 12 C 0.315 3.685 13 O -0.420 6.420 14 C -0.143 4.143 15 C -0.136 4.136 16 C -0.136 4.136 17 C -0.019 4.019 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.790 3.210 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.039 4.039 27 H 0.181 0.819 28 H 0.197 0.803 29 H 0.185 0.815 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.071 0.929 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.518 3.633 -19.421 33.069 hybrid contribution 1.085 -0.127 0.677 1.285 sum -25.433 3.506 -18.744 31.788 Atomic orbital electron populations 1.81323 1.13511 1.10490 1.08491 1.25891 0.92807 0.92451 0.92681 1.15892 0.83367 1.10217 0.95896 1.21852 0.95218 0.90800 0.96521 1.21538 0.93010 0.99219 0.99766 1.22133 1.02374 0.90101 0.90439 1.19955 0.93328 1.09660 0.94763 1.22430 0.89711 0.71614 0.87858 1.90602 1.72310 1.36390 1.34955 1.23620 0.92923 1.06687 0.83273 1.86593 1.24476 1.82373 1.33441 1.24206 0.79808 0.71820 0.92662 1.90668 1.61364 1.46469 1.43455 1.21503 0.95005 1.07248 0.90577 1.21347 0.92546 1.01976 0.97733 1.21458 0.95356 1.01289 0.95516 1.19056 0.92683 0.94720 0.95406 1.21800 0.92167 1.48195 0.95839 0.91802 1.26014 0.98010 0.95065 1.00986 1.70119 1.03992 1.51276 1.32205 0.85392 0.78453 0.77718 0.79434 1.18355 1.20526 1.20517 1.21352 0.93339 0.91788 0.97415 0.81855 0.80330 0.81516 0.85260 0.85271 0.85620 0.85618 0.92695 0.92699 0.92063 0.92070 0.99259 0.99269 0.92883 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.31 18.54 19.00 0.35 -8.96 16 2 C 0.28 3.87 15.32 88.33 1.35 5.22 16 3 C -0.05 -0.41 5.72 -21.41 -0.12 -0.53 16 4 C -0.02 -0.04 9.75 22.61 0.22 0.18 16 5 C -0.12 0.10 10.01 22.18 0.22 0.32 16 6 C -0.03 -0.07 9.47 22.63 0.21 0.15 16 7 C -0.18 -1.56 5.86 -20.18 -0.12 -1.68 16 8 C 0.41 6.00 7.20 28.04 0.20 6.20 16 9 O -0.47 -10.94 16.49 15.86 0.26 -10.68 16 10 C 0.01 0.12 4.55 71.24 0.32 0.44 16 11 O -0.35 -7.63 9.75 -45.10 -0.44 -8.07 16 12 C 0.47 11.47 7.96 71.24 0.57 12.03 16 13 O -0.53 -15.43 15.73 21.98 0.35 -15.08 16 14 C -0.11 -2.49 5.81 29.85 0.17 -2.31 16 15 C -0.10 -3.18 4.50 30.59 0.14 -3.04 16 16 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 17 C 0.02 0.97 4.97 29.85 0.15 1.12 16 18 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 20 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 21 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 22 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C -0.02 -0.19 9.30 22.86 0.21 0.02 16 27 H 0.16 -0.43 8.06 -2.91 -0.02 -0.45 16 28 H 0.18 -1.23 8.06 -2.91 -0.02 -1.26 16 29 H 0.17 -0.42 7.03 -2.91 -0.02 -0.44 16 30 H 0.13 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.13 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 35 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.13 1.71 7.64 -2.91 -0.02 1.69 16 Total: -1.00 -80.51 372.85 8.26 -72.25 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 1.04 Total: -2.68 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.39 Total: -15.85 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: 0.64 Total: -66.14 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: 0.17 Total: -33.82 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -80.51 8.26 -72.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.237 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds