Wall clock time and date at job start Tue Mar 31 2020 10:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47458 * 274.40663 * 3 2 1 5 5 H 1.48500 * 109.47151 * 34.40775 * 3 2 1 6 6 H 1.48501 * 109.47214 * 154.40540 * 3 2 1 7 7 C 1.37878 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00296 * 5.67914 * 7 2 1 9 9 C 1.50701 * 119.99727 * 185.67696 * 7 2 1 10 10 O 1.45202 * 112.85061 * 65.05149 * 9 7 2 11 11 C 1.34231 * 117.00001 * 54.66683 * 10 9 7 12 12 O 1.20826 * 120.00079 * 5.04799 * 11 10 9 13 13 C 1.50701 * 120.00066 * 185.04057 * 11 10 9 14 14 C 1.52999 * 109.47327 * 180.88882 * 13 11 10 15 15 H 1.09005 * 110.56095 * 50.87564 * 14 13 11 16 16 C 1.51391 * 110.51212 * 288.20826 * 14 13 11 17 17 O 1.21288 * 126.44753 * 61.38338 * 16 14 13 18 18 N 1.34380 * 107.11255 * 241.39183 * 16 14 13 19 19 C 1.39529 * 112.24465 * 359.94851 * 18 16 14 20 20 C 1.39366 * 130.82440 * 180.02562 * 19 18 16 21 21 C 1.37940 * 120.13189 * 180.02562 * 20 19 18 22 22 C 1.38303 * 120.37431 * 0.02562 * 21 20 19 23 23 C 1.38396 * 119.82611 * 359.97438 * 22 21 20 24 24 C 1.37672 * 119.91626 * 359.97438 * 23 22 21 25 25 C 1.53785 * 113.69280 * 196.31450 * 9 7 2 26 26 C 1.53777 * 87.07679 * 89.12905 * 25 9 7 27 27 C 1.53776 * 87.08531 * 25.43792 * 26 25 9 28 28 H 0.97001 * 120.00239 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46972 * 60.89002 * 13 11 10 30 30 H 1.08997 * 109.47356 * 300.89235 * 13 11 10 31 31 H 0.96995 * 123.87647 * 180.02562 * 18 16 14 32 32 H 1.07994 * 119.93635 * 359.97438 * 20 19 18 33 33 H 1.07999 * 119.81467 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.09182 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.04287 * 179.72605 * 23 22 21 36 36 H 1.09001 * 113.61457 * 203.67986 * 25 9 7 37 37 H 1.08998 * 113.61201 * 334.58617 * 25 9 7 38 38 H 1.09001 * 113.61824 * 270.88454 * 26 25 9 39 39 H 1.09007 * 113.68445 * 139.99567 * 26 25 9 40 40 H 1.08997 * 113.61558 * 220.01912 * 27 26 25 41 41 H 1.08997 * 113.69433 * 89.11863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4035 2.1003 -1.3959 5 1 1.4963 2.6240 0.7911 6 1 3.5902 1.4151 0.6048 7 6 2.0045 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0935 9 6 3.5060 -1.1973 0.1286 10 8 3.9626 -0.6953 1.4123 11 6 3.4647 -1.2864 2.5098 12 8 2.7452 -2.2511 2.4027 13 6 3.8033 -0.7468 3.8756 14 6 3.1310 -1.6091 4.9457 15 1 3.3485 -2.6642 4.7795 16 6 1.6359 -1.3712 4.9566 17 8 0.8667 -1.5781 4.0419 18 7 1.3213 -0.8875 6.1702 19 6 2.4388 -0.7677 6.9970 20 6 2.5563 -0.3169 8.3105 21 6 3.7906 -0.2904 8.9258 22 6 4.9198 -0.7096 8.2462 23 6 4.8112 -1.1586 6.9417 24 6 3.5803 -1.1870 6.3256 25 6 4.1585 -2.5287 -0.2796 26 6 4.2295 -1.9652 -1.7086 27 6 4.2290 -0.5652 -1.0725 28 1 -0.4850 0.8400 0.0004 29 1 3.4467 0.2797 3.9593 30 1 4.8838 -0.7687 4.0173 31 1 0.4206 -0.6501 6.4407 32 1 1.6793 0.0132 8.8474 33 1 3.8757 0.0603 9.9437 34 1 5.8841 -0.6866 8.7323 35 1 5.6914 -1.4826 6.4062 36 1 5.1359 -2.6931 0.1741 37 1 3.4952 -3.3880 -0.1816 38 1 3.3413 -2.1741 -2.3050 39 1 5.1558 -2.2078 -2.2295 40 1 3.6227 0.1605 -1.6146 41 1 5.2251 -0.1916 -0.8353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:18 Heat of formation + Delta-G solvation = -48.039056 kcal Electronic energy + Delta-G solvation = -26780.011134 eV Core-core repulsion = 23012.486668 eV Total energy + Delta-G solvation = -3767.524466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55242 -39.42116 -38.26722 -37.25657 -35.51069 -34.39008 -33.36831 -32.23197 -30.32639 -29.13286 -26.80635 -25.95999 -24.89618 -22.94646 -22.63570 -21.49930 -21.00053 -19.56508 -18.50627 -17.86755 -17.19639 -16.64275 -16.14376 -15.82358 -15.34594 -15.27621 -15.07022 -14.75228 -14.37845 -14.07407 -13.73568 -13.58574 -13.10922 -12.99272 -12.90355 -12.66284 -12.20011 -12.06787 -11.75112 -11.64634 -11.40319 -11.02702 -10.92950 -10.86051 -10.78104 -10.51602 -10.09820 -9.91262 -9.73427 -9.68112 -9.32718 -9.05371 -8.89389 -8.64982 -8.45001 -8.06030 -6.09139 -4.13380 1.08565 1.16266 2.71652 3.07185 3.28174 3.31956 3.47405 3.53502 3.65146 3.83929 4.17535 4.44427 4.47091 4.71879 4.82362 4.98127 5.15088 5.21015 5.26087 5.28879 5.50562 5.55890 5.61408 5.63854 5.77614 5.77778 5.93577 5.96553 6.01587 6.23347 6.28274 6.32119 6.41306 6.43537 6.57380 6.68955 6.89208 6.89844 6.98722 6.99705 7.32301 7.57949 7.95303 8.26407 8.51838 9.00068 9.13759 9.51764 11.01728 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.004419 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.084374 B = 6334.077788 C = 6834.174528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.085 3.915 3 Si 0.857 3.143 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.235 1.235 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.201 3.799 10 O -0.374 6.374 11 C 0.449 3.551 12 O -0.464 6.464 13 C -0.097 4.097 14 C -0.067 4.067 15 H 0.131 0.869 16 C 0.518 3.482 17 O -0.436 6.436 18 N -0.671 5.671 19 C 0.157 3.843 20 C -0.148 4.148 21 C -0.085 4.085 22 C -0.149 4.149 23 C -0.061 4.061 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.124 4.124 27 C -0.133 4.133 28 H 0.264 0.736 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.410 0.590 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.161 0.468 16.384 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.120 4.120 3 Si 0.684 3.316 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.158 1.158 7 C -0.535 4.535 8 H 0.102 0.898 9 C 0.168 3.832 10 O -0.293 6.293 11 C 0.289 3.711 12 O -0.349 6.349 13 C -0.136 4.136 14 C -0.088 4.088 15 H 0.149 0.851 16 C 0.303 3.697 17 O -0.303 6.303 18 N -0.316 5.316 19 C 0.059 3.941 20 C -0.169 4.169 21 C -0.104 4.104 22 C -0.168 4.168 23 C -0.080 4.080 24 C -0.142 4.142 25 C -0.183 4.183 26 C -0.161 4.161 27 C -0.170 4.170 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.363 0.064 15.597 18.726 hybrid contribution -0.337 1.165 0.264 1.242 sum 10.026 1.230 15.860 18.803 Atomic orbital electron populations 1.69934 1.06423 1.27038 1.47719 1.24968 0.94606 0.99108 0.93317 0.87190 0.82489 0.83607 0.78349 1.20520 1.22033 1.15791 1.20746 0.87073 0.95157 1.50569 0.89760 1.21625 0.94699 0.90419 0.76498 1.86500 1.65517 1.61014 1.16284 1.22576 0.79081 0.82971 0.86507 1.90674 1.31439 1.25501 1.87259 1.21140 1.02564 1.00370 0.89476 1.20473 0.93141 1.03463 0.91709 0.85127 1.20564 0.91038 0.76919 0.81200 1.91057 1.56171 1.46876 1.36170 1.43956 1.09587 1.63974 1.14079 1.18225 0.86906 0.97067 0.91921 1.20350 0.98829 1.05418 0.92328 1.20844 0.91664 0.98229 0.99624 1.21015 0.98778 1.02368 0.94640 1.20309 0.95615 0.97542 0.94501 1.19837 0.93616 1.05241 0.95541 1.23324 0.99504 0.99411 0.96105 1.22469 1.00927 0.96530 0.96203 1.23274 0.99464 0.97215 0.97070 0.92599 0.88598 0.87474 0.75171 0.85796 0.85480 0.85496 0.85302 0.91843 0.91318 0.89611 0.92523 0.91510 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.86 13.96 55.43 0.77 -27.08 16 2 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 3 Si 0.86 22.04 24.61 -169.99 -4.18 17.86 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.23 -5.74 5.57 56.52 0.31 -5.42 16 7 C -0.50 -14.62 7.17 -34.44 -0.25 -14.86 16 8 H 0.08 2.78 8.05 -52.49 -0.42 2.35 16 9 C 0.20 4.95 0.24 -90.96 -0.02 4.93 16 10 O -0.37 -8.90 8.15 -39.26 -0.32 -9.22 16 11 C 0.45 10.12 7.25 36.01 0.26 10.38 16 12 O -0.46 -11.96 12.49 -25.62 -0.32 -12.28 16 13 C -0.10 -1.61 5.32 -27.88 -0.15 -1.76 16 14 C -0.07 -1.03 2.59 -92.37 -0.24 -1.27 16 15 H 0.13 2.02 7.86 -51.93 -0.41 1.61 16 16 C 0.52 9.55 7.83 -10.82 -0.08 9.46 16 17 O -0.44 -10.65 16.10 -14.91 -0.24 -10.89 16 18 N -0.67 -9.37 5.88 -9.70 -0.06 -9.43 16 19 C 0.16 1.90 7.11 -83.69 -0.60 1.31 16 20 C -0.15 -1.39 10.07 -39.27 -0.40 -1.79 16 21 C -0.09 -0.68 10.02 -39.67 -0.40 -1.08 16 22 C -0.15 -1.21 10.07 -39.50 -0.40 -1.60 16 23 C -0.06 -0.59 10.03 -39.73 -0.40 -0.99 16 24 C -0.14 -1.71 5.67 -104.37 -0.59 -2.30 16 25 C -0.15 -3.12 7.08 -25.92 -0.18 -3.30 16 26 C -0.12 -2.40 7.80 -25.92 -0.20 -2.61 16 27 C -0.13 -2.86 6.02 -25.92 -0.16 -3.01 16 28 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 29 H 0.10 1.60 8.11 -51.93 -0.42 1.18 16 30 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.41 4.84 8.96 -40.82 -0.37 4.47 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 38 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.51 5.68 -51.93 -0.29 1.21 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -37.09 338.72 -8.50 -45.59 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.36 Total: 6.39 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.90 Total: -6.04 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.72 Total: -36.51 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.88 Total: -32.39 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.18 Total: 17.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.09 -8.50 -45.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.454 kcal (2) G-P(sol) polarization free energy of solvation -37.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds