Wall clock time and date at job start Tue Mar 31 2020 10:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47458 * 274.40663 * 3 2 1 5 5 H 1.48500 * 109.47151 * 34.40775 * 3 2 1 6 6 H 1.48501 * 109.47214 * 154.40540 * 3 2 1 7 7 C 1.37878 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00296 * 5.67914 * 7 2 1 9 9 C 1.50701 * 119.99727 * 185.67696 * 7 2 1 10 10 O 1.45202 * 112.85061 * 65.05149 * 9 7 2 11 11 C 1.34231 * 117.00001 * 54.66683 * 10 9 7 12 12 O 1.20826 * 120.00079 * 5.04799 * 11 10 9 13 13 C 1.50701 * 120.00066 * 185.04057 * 11 10 9 14 14 C 1.52999 * 109.47327 * 180.88882 * 13 11 10 15 15 H 1.09005 * 110.56095 * 50.87564 * 14 13 11 16 16 C 1.51391 * 110.51212 * 288.20826 * 14 13 11 17 17 O 1.21288 * 126.44753 * 61.38338 * 16 14 13 18 18 N 1.34380 * 107.11255 * 241.39183 * 16 14 13 19 19 C 1.39529 * 112.24465 * 359.94851 * 18 16 14 20 20 C 1.39366 * 130.82440 * 180.02562 * 19 18 16 21 21 C 1.37940 * 120.13189 * 180.02562 * 20 19 18 22 22 C 1.38303 * 120.37431 * 0.02562 * 21 20 19 23 23 C 1.38396 * 119.82611 * 359.97438 * 22 21 20 24 24 C 1.37672 * 119.91626 * 359.97438 * 23 22 21 25 25 C 1.53785 * 113.69280 * 196.31450 * 9 7 2 26 26 C 1.53777 * 87.07679 * 89.12905 * 25 9 7 27 27 C 1.53776 * 87.08531 * 25.43792 * 26 25 9 28 28 H 0.97001 * 120.00239 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46972 * 60.89002 * 13 11 10 30 30 H 1.08997 * 109.47356 * 300.89235 * 13 11 10 31 31 H 0.96995 * 123.87647 * 180.02562 * 18 16 14 32 32 H 1.07994 * 119.93635 * 359.97438 * 20 19 18 33 33 H 1.07999 * 119.81467 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.09182 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.04287 * 179.72605 * 23 22 21 36 36 H 1.09001 * 113.61457 * 203.67986 * 25 9 7 37 37 H 1.08998 * 113.61201 * 334.58617 * 25 9 7 38 38 H 1.09001 * 113.61824 * 270.88454 * 26 25 9 39 39 H 1.09007 * 113.68445 * 139.99567 * 26 25 9 40 40 H 1.08997 * 113.61558 * 220.01912 * 27 26 25 41 41 H 1.08997 * 113.69433 * 89.11863 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4035 2.1003 -1.3959 5 1 1.4963 2.6240 0.7911 6 1 3.5902 1.4151 0.6048 7 6 2.0045 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0935 9 6 3.5060 -1.1973 0.1286 10 8 3.9626 -0.6953 1.4123 11 6 3.4647 -1.2864 2.5098 12 8 2.7452 -2.2511 2.4027 13 6 3.8033 -0.7468 3.8756 14 6 3.1310 -1.6091 4.9457 15 1 3.3485 -2.6642 4.7795 16 6 1.6359 -1.3712 4.9566 17 8 0.8667 -1.5781 4.0419 18 7 1.3213 -0.8875 6.1702 19 6 2.4388 -0.7677 6.9970 20 6 2.5563 -0.3169 8.3105 21 6 3.7906 -0.2904 8.9258 22 6 4.9198 -0.7096 8.2462 23 6 4.8112 -1.1586 6.9417 24 6 3.5803 -1.1870 6.3256 25 6 4.1585 -2.5287 -0.2796 26 6 4.2295 -1.9652 -1.7086 27 6 4.2290 -0.5652 -1.0725 28 1 -0.4850 0.8400 0.0004 29 1 3.4467 0.2797 3.9593 30 1 4.8838 -0.7687 4.0173 31 1 0.4206 -0.6501 6.4407 32 1 1.6793 0.0132 8.8474 33 1 3.8757 0.0603 9.9437 34 1 5.8841 -0.6866 8.7323 35 1 5.6914 -1.4826 6.4062 36 1 5.1359 -2.6931 0.1741 37 1 3.4952 -3.3880 -0.1816 38 1 3.3413 -2.1741 -2.3050 39 1 5.1558 -2.2078 -2.2295 40 1 3.6227 0.1605 -1.6146 41 1 5.2251 -0.1916 -0.8353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:17 Heat of formation + Delta-G solvation = -73.724702 kcal Electronic energy + Delta-G solvation = -26781.124947 eV Core-core repulsion = 23012.486668 eV Total energy + Delta-G solvation = -3768.638279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.68257 -41.20289 -39.45619 -39.00322 -36.65734 -36.20112 -34.61225 -34.49719 -31.23358 -30.08079 -28.71439 -27.42702 -26.62553 -24.71964 -23.50493 -22.47290 -22.37757 -21.04863 -20.48224 -19.05706 -18.77216 -17.98586 -17.67021 -17.33328 -17.15764 -16.74783 -16.48450 -16.28571 -15.57754 -15.45977 -15.05168 -14.89932 -14.75551 -14.64347 -14.03153 -13.89503 -13.67574 -13.50263 -13.22393 -13.13563 -12.84582 -12.78675 -12.58513 -12.30633 -11.99191 -11.83609 -11.81876 -11.78359 -11.65178 -11.25188 -11.09329 -10.97254 -10.58882 -10.48970 -9.78988 -8.99557 -8.39233 -6.48664 0.21294 0.43337 1.24424 1.26370 1.44626 1.48874 1.68595 1.98489 2.18380 2.29275 2.89125 2.99790 3.06377 3.35639 3.67798 3.83884 3.88763 3.96615 4.03582 4.15618 4.18073 4.24276 4.43545 4.48177 4.50688 4.59065 4.66713 4.79785 4.80772 4.85312 5.04145 5.09715 5.14561 5.19474 5.23319 5.51758 5.56513 5.62567 5.65368 5.68911 5.83846 5.91348 6.12357 6.39893 6.60272 6.97762 7.18878 7.32704 8.77061 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.004419 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.084374 B = 6334.077788 C = 6834.174528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.023 3.977 3 Si 0.923 3.077 4 H -0.258 1.258 5 H -0.300 1.300 6 H -0.207 1.207 7 C -0.498 4.498 8 H 0.019 0.981 9 C 0.179 3.821 10 O -0.372 6.372 11 C 0.436 3.564 12 O -0.507 6.507 13 C -0.085 4.085 14 C -0.061 4.061 15 H 0.124 0.876 16 C 0.506 3.494 17 O -0.520 6.520 18 N -0.661 5.661 19 C 0.124 3.876 20 C -0.142 4.142 21 C -0.080 4.080 22 C -0.135 4.135 23 C -0.063 4.063 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.109 4.109 27 C -0.126 4.126 28 H 0.264 0.736 29 H 0.098 0.902 30 H 0.157 0.843 31 H 0.416 0.584 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.360 2.482 19.066 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.177 4.177 3 Si 0.746 3.254 4 H -0.183 1.183 5 H -0.228 1.228 6 H -0.129 1.129 7 C -0.535 4.535 8 H 0.037 0.963 9 C 0.145 3.855 10 O -0.291 6.291 11 C 0.278 3.722 12 O -0.394 6.394 13 C -0.123 4.123 14 C -0.083 4.083 15 H 0.141 0.859 16 C 0.293 3.707 17 O -0.394 6.394 18 N -0.305 5.305 19 C 0.027 3.973 20 C -0.163 4.163 21 C -0.098 4.098 22 C -0.154 4.154 23 C -0.081 4.081 24 C -0.150 4.150 25 C -0.179 4.179 26 C -0.147 4.147 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.175 0.825 31 H 0.255 0.745 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.170 0.830 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.625 2.087 18.348 24.190 hybrid contribution -1.941 0.410 -0.329 2.011 sum 13.684 2.497 18.019 22.764 Atomic orbital electron populations 1.70118 1.08739 1.28007 1.50600 1.25941 0.95334 1.03493 0.92883 0.86166 0.81875 0.77888 0.79501 1.18281 1.22796 1.12899 1.20773 0.90160 0.92576 1.50018 0.96279 1.21672 0.92126 0.93851 0.77872 1.86458 1.65248 1.61029 1.16322 1.23792 0.77916 0.82381 0.88135 1.90679 1.33106 1.27655 1.87928 1.21242 1.05585 0.99890 0.85601 1.20347 0.91056 1.03046 0.93830 0.85862 1.21135 0.92173 0.76035 0.81338 1.91010 1.58314 1.50900 1.39153 1.43779 1.10862 1.62660 1.13203 1.18528 0.85850 0.99717 0.93165 1.20696 1.00558 1.04096 0.90975 1.21327 0.90730 0.96759 1.01008 1.21487 1.00334 0.99848 0.93696 1.20641 0.95009 0.97088 0.95346 1.19695 0.95035 1.06827 0.93478 1.23324 0.99903 0.96790 0.97912 1.22412 1.02525 0.94774 0.94959 1.23308 1.00480 0.97833 0.94668 0.92689 0.88394 0.82512 0.74510 0.83976 0.82059 0.82087 0.83018 0.88705 0.94382 0.91582 0.87579 0.92651 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.95 13.96 21.45 0.30 -63.65 16 2 C 0.02 1.42 5.47 84.66 0.46 1.89 16 3 Si 0.92 46.28 24.61 68.60 1.69 47.96 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 6 H -0.21 -9.37 5.57 99.48 0.55 -8.82 16 7 C -0.50 -31.07 7.17 25.60 0.18 -30.89 16 8 H 0.02 1.38 8.05 -2.92 -0.02 1.36 16 9 C 0.18 8.84 0.24 -11.01 0.00 8.84 16 10 O -0.37 -17.32 8.15 -51.42 -0.42 -17.74 16 11 C 0.44 19.95 7.25 71.24 0.52 20.47 16 12 O -0.51 -27.86 12.49 28.53 0.36 -27.50 16 13 C -0.09 -2.74 5.32 29.85 0.16 -2.58 16 14 C -0.06 -1.92 2.59 -11.93 -0.03 -1.95 16 15 H 0.12 3.97 7.86 -2.38 -0.02 3.95 16 16 C 0.51 19.98 7.83 87.94 0.69 20.67 16 17 O -0.52 -28.07 16.10 16.51 0.27 -27.80 16 18 N -0.66 -19.18 5.88 -303.20 -1.78 -20.96 16 19 C 0.12 2.82 7.11 38.35 0.27 3.09 16 20 C -0.14 -2.20 10.07 22.47 0.23 -1.98 16 21 C -0.08 -0.85 10.02 22.21 0.22 -0.63 16 22 C -0.14 -1.41 10.07 22.32 0.22 -1.19 16 23 C -0.06 -0.93 10.03 22.17 0.22 -0.71 16 24 C -0.15 -3.31 5.67 -19.70 -0.11 -3.42 16 25 C -0.14 -6.02 7.08 31.12 0.22 -5.80 16 26 C -0.11 -4.04 7.80 31.12 0.24 -3.79 16 27 C -0.13 -5.07 6.02 31.12 0.19 -4.88 16 28 H 0.26 16.89 8.31 -92.71 -0.77 16.12 16 29 H 0.10 3.15 8.11 -2.39 -0.02 3.13 16 30 H 0.16 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.42 10.49 8.96 -92.71 -0.83 9.66 16 32 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 38 H 0.07 2.67 8.14 -2.39 -0.02 2.66 16 39 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.05 2.37 5.68 -2.39 -0.01 2.35 16 41 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -92.78 338.72 4.17 -88.61 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.08 Total: 23.96 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 3.68 Total: -2.87 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.48 Total: -84.61 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: 0.20 Total: -73.05 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.69 Total: 47.96 kcal Total: -92.78 4.17 -88.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.884 kcal (2) G-P(sol) polarization free energy of solvation -92.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds