Wall clock time and date at job start Tue Mar 31 2020 12:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37986 * 120.07521 * 2 1 4 4 C 1.38330 * 120.14860 * 180.02562 * 3 2 1 5 5 C 1.38383 * 120.29269 * 359.97438 * 4 3 2 6 6 C 1.37940 * 120.14174 * 359.74301 * 5 4 3 7 7 C 1.39556 * 120.07809 * 180.02562 * 2 1 3 8 8 C 1.47836 * 120.13884 * 359.96092 * 7 2 1 9 9 C 1.35767 * 126.57972 * 129.70826 * 8 7 2 10 10 N 1.34143 * 107.51305 * 179.83457 * 9 8 7 11 11 C 1.30361 * 108.90190 * 0.43505 * 10 9 8 12 12 C 1.50702 * 125.48383 * 179.74961 * 11 10 9 13 13 O 1.45203 * 109.46888 * 89.97236 * 12 11 10 14 14 C 1.34228 * 116.99634 * 180.02562 * 13 12 11 15 15 O 1.20829 * 120.00226 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99954 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47165 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.46950 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99700 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99821 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46938 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47012 * 119.99888 * 22 20 18 25 25 H 1.48499 * 109.47514 * 240.00250 * 22 20 18 26 26 O 1.33997 * 109.03306 * 359.72686 * 11 10 9 27 27 H 1.09008 * 109.47452 * 269.97948 * 1 2 3 28 28 H 1.08998 * 109.47649 * 29.98524 * 1 2 3 29 29 H 1.09003 * 109.46958 * 149.98673 * 1 2 3 30 30 H 1.08005 * 119.92221 * 0.03888 * 3 2 1 31 31 H 1.08002 * 119.85730 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.92910 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.07513 * 180.26048 * 6 5 4 34 34 H 1.07999 * 126.24726 * 359.97438 * 9 8 7 35 35 H 1.08998 * 109.47367 * 209.97512 * 12 11 10 36 36 H 1.09006 * 109.46640 * 329.97454 * 12 11 10 37 37 H 1.08999 * 109.47379 * 300.00161 * 16 14 13 38 38 H 1.09006 * 109.46588 * 59.99995 * 16 14 13 39 39 H 1.09001 * 109.46717 * 300.00253 * 17 16 14 40 40 H 1.08999 * 109.46954 * 60.00350 * 17 16 14 41 41 H 0.97007 * 120.00377 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0005 5 6 4.2813 0.0019 -0.0005 6 6 3.6022 -1.1988 0.0053 7 6 2.2064 -1.2076 -0.0005 8 6 1.4720 -2.4907 -0.0002 9 6 1.6742 -3.5388 -0.8392 10 7 0.8041 -4.5016 -0.4993 11 6 0.0790 -4.0821 0.4994 12 6 -1.0188 -4.8647 1.1729 13 8 -0.4605 -5.6368 2.2686 14 6 -1.3127 -6.3952 2.9759 15 8 -2.4863 -6.4136 2.6888 16 6 -0.8057 -7.2246 4.1275 17 6 -1.9720 -7.9875 4.7589 18 6 -1.4650 -8.8164 5.9109 19 1 -0.4159 -8.8009 6.1667 20 6 -2.3404 -9.5953 6.6375 21 7 -3.6179 -9.6145 6.3256 22 14 -1.7120 -10.6233 8.0649 23 1 -0.2471 -10.4268 8.2093 24 1 -2.3930 -10.2024 9.3157 25 1 -1.9963 -12.0575 7.8051 26 8 0.4671 -2.8432 0.8312 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 1.6584 2.1294 0.0006 31 1 4.1182 2.1332 -0.0010 32 1 5.3613 0.0101 -0.0005 33 1 4.1493 -2.1300 0.0096 34 1 2.4040 -3.5893 -1.6337 35 1 -1.7709 -4.1769 1.5594 36 1 -1.4797 -5.5389 0.4510 37 1 -0.0613 -7.9334 3.7647 38 1 -0.3526 -6.5717 4.8736 39 1 -2.7160 -7.2783 5.1217 40 1 -2.4255 -8.6402 4.0130 41 1 -4.2338 -10.1627 6.8366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:07 Heat of formation + Delta-G solvation = -69.499401 kcal Electronic energy + Delta-G solvation = -24217.759844 eV Core-core repulsion = 20449.304788 eV Total energy + Delta-G solvation = -3768.455056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.55346 -41.60100 -40.23840 -37.89098 -36.05397 -35.66044 -34.15166 -33.48398 -33.14520 -31.37816 -28.75766 -27.95201 -27.20625 -24.59028 -24.23984 -22.98352 -22.70293 -21.81612 -21.60691 -19.21113 -18.83891 -18.33077 -17.86219 -17.72819 -17.52916 -16.77994 -16.46886 -16.35209 -16.15144 -15.41318 -15.12349 -14.89450 -14.77847 -14.32231 -14.25247 -14.11765 -13.98724 -13.90458 -13.31697 -13.18901 -13.05993 -12.86418 -12.61000 -12.48715 -12.33132 -12.11947 -12.05484 -11.95744 -11.82966 -11.78008 -11.54332 -11.28035 -10.58259 -10.54829 -9.77947 -9.40402 -8.19976 -6.33285 -0.35838 0.31265 0.36844 1.14003 1.20628 1.38094 1.44200 1.44577 1.58201 1.94691 2.43278 2.71482 2.77605 3.14079 3.41878 3.76519 3.78238 3.82789 3.85947 3.98716 4.09506 4.15106 4.33565 4.39428 4.40780 4.43608 4.44062 4.60358 4.66180 4.70492 4.79684 4.86019 4.99219 5.04607 5.15411 5.19685 5.40318 5.47508 5.50690 5.51979 5.55622 5.80917 5.94361 6.13053 6.44624 6.67041 6.85039 7.36783 8.92720 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.002047 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.530992 B =13677.625502 C =14009.504874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.126 4.126 4 C -0.098 4.098 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.053 4.053 8 C 0.012 3.988 9 C -0.028 4.028 10 N -0.472 5.472 11 C 0.176 3.824 12 C 0.161 3.839 13 O -0.357 6.357 14 C 0.474 3.526 15 O -0.532 6.532 16 C -0.094 4.094 17 C 0.038 3.962 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.934 5.934 22 Si 0.974 3.026 23 H -0.255 1.255 24 H -0.280 1.280 25 H -0.281 1.281 26 O -0.193 6.193 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.217 0.783 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.117 0.883 39 H -0.006 1.006 40 H -0.007 1.007 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.046 24.423 -16.007 33.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.116 4.116 5 C -0.143 4.143 6 C -0.109 4.109 7 C -0.054 4.054 8 C -0.041 4.041 9 C -0.169 4.169 10 N -0.203 5.203 11 C -0.029 4.029 12 C 0.087 3.913 13 O -0.274 6.274 14 C 0.319 3.681 15 O -0.421 6.421 16 C -0.131 4.131 17 C 0.000 4.000 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.798 3.202 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.206 1.206 26 O -0.079 6.079 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.157 0.843 34 H 0.234 0.766 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.012 0.988 40 H 0.012 0.988 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.406 23.793 -16.284 33.173 hybrid contribution -0.483 -0.166 0.809 0.956 sum 15.923 23.627 -15.476 32.423 Atomic orbital electron populations 1.20853 0.90688 1.03079 1.02776 1.20262 0.96650 0.92543 0.97847 1.21296 0.95035 0.97376 1.00675 1.21730 0.94008 0.99585 0.96265 1.21435 1.01628 0.91360 0.99899 1.21391 0.91252 1.00305 0.97916 1.17701 0.92870 0.86983 1.07799 1.21930 0.90956 0.97862 0.93387 1.23865 1.01595 0.88408 1.02985 1.70352 1.06488 1.30583 1.12863 1.25440 1.00069 0.82054 0.95356 1.21007 0.88733 0.93419 0.88183 1.86567 1.42442 1.55560 1.42825 1.24520 0.84273 0.76757 0.82516 1.90654 1.19624 1.63648 1.68161 1.21569 1.01358 0.97910 0.92238 1.18827 0.92453 0.94038 0.94654 1.21661 0.95546 1.26282 1.14596 0.90531 1.26080 0.94947 0.98342 1.00850 1.70156 1.04125 1.41220 1.41926 0.85271 0.79163 0.77801 0.78003 1.17817 1.20604 1.20639 1.84516 1.42347 1.31152 1.49915 0.90939 0.89015 0.93279 0.83366 0.82680 0.82660 0.84279 0.76642 0.86914 0.86038 0.86535 0.86490 0.98781 0.98820 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.27 71.23 0.66 -1.17 16 2 C -0.07 -1.19 5.91 -19.61 -0.12 -1.30 16 3 C -0.13 -1.44 9.69 22.23 0.22 -1.23 16 4 C -0.10 -0.87 10.04 22.33 0.22 -0.65 16 5 C -0.13 -1.22 10.03 22.23 0.22 -1.00 16 6 C -0.09 -1.26 9.72 22.53 0.22 -1.04 16 7 C -0.05 -0.97 5.80 -20.09 -0.12 -1.09 16 8 C 0.01 0.26 5.57 24.24 0.13 0.40 16 9 C -0.03 -0.63 11.78 83.77 0.99 0.36 16 10 N -0.47 -13.18 11.27 -302.86 -3.41 -16.59 16 11 C 0.18 4.90 7.97 88.33 0.70 5.60 16 12 C 0.16 4.51 6.09 71.24 0.43 4.94 16 13 O -0.36 -11.91 10.20 -51.40 -0.52 -12.43 16 14 C 0.47 18.46 7.96 71.24 0.57 19.03 16 15 O -0.53 -24.00 15.73 21.95 0.35 -23.65 16 16 C -0.09 -3.75 5.75 29.85 0.17 -3.58 16 17 C 0.04 2.01 4.26 29.85 0.13 2.14 16 18 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 19 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 21 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 22 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 23 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 O -0.19 -5.16 9.96 -7.69 -0.08 -5.24 16 27 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 29 H 0.05 0.91 6.81 -2.39 -0.02 0.89 16 30 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 31 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.22 3.23 8.06 -2.91 -0.02 3.20 16 35 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 36 H 0.12 3.23 8.13 -2.38 -0.02 3.21 16 37 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 38 H 0.12 4.18 8.14 -2.38 -0.02 4.16 16 39 H -0.01 -0.37 8.10 -2.39 -0.02 -0.39 16 40 H -0.01 -0.40 8.10 -2.39 -0.02 -0.42 16 41 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -74.29 363.84 4.81 -69.48 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.04 Total: 8.56 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.13 Total: -8.36 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -3.13 Total: -74.15 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.26 Total: -41.32 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -74.29 4.81 -69.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.023 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds