Wall clock time and date at job start Tue Mar 31 2020 10:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48499 * 109.46902 * 240.00371 * 3 2 1 5 5 H 1.48505 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47301 * 119.99913 * 3 2 1 7 7 C 1.38948 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99591 * 171.40987 * 7 2 1 9 9 N 1.37096 * 120.00081 * 351.39957 * 7 2 1 10 10 C 1.46503 * 120.00206 * 22.92194 * 9 7 2 11 11 C 1.50705 * 109.46938 * 269.99916 * 10 9 7 12 12 O 1.20824 * 120.00048 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99887 * 179.97438 * 11 10 9 14 14 C 1.34776 * 120.00166 * 202.91473 * 9 7 2 15 15 O 1.21291 * 120.00090 * 184.87115 * 14 9 7 16 16 C 1.50696 * 120.00053 * 4.87307 * 14 9 7 17 17 H 1.09000 * 115.58321 * 51.54327 * 16 14 9 18 18 C 1.53115 * 117.51882 * 197.32840 * 16 14 9 19 19 C 1.52367 * 59.85243 * 107.44403 * 18 16 14 20 20 C 1.53779 * 121.19412 * 249.47634 * 19 18 16 21 21 C 1.54483 * 102.19885 * 190.01762 * 20 19 18 22 22 C 1.51429 * 105.23534 * 25.76590 * 21 20 19 23 23 C 1.38462 * 130.36801 * 163.14289 * 22 21 20 24 24 C 1.38109 * 120.26131 * 179.88128 * 23 22 21 25 25 C 1.38249 * 119.90866 * 359.97438 * 24 23 22 26 26 C 1.38085 * 119.94765 * 0.02947 * 25 24 23 27 27 C 1.38384 * 109.78772 * 343.06861 * 22 21 20 28 28 H 0.96999 * 119.99580 * 5.01144 * 1 2 3 29 29 H 1.09008 * 109.46734 * 29.99338 * 10 9 7 30 30 H 1.08999 * 109.47360 * 149.99226 * 10 9 7 31 31 H 0.96702 * 117.00117 * 179.97438 * 13 11 10 32 32 H 1.09000 * 117.51741 * 359.97438 * 18 16 14 33 33 H 1.09003 * 117.51689 * 214.88686 * 18 16 14 34 34 H 1.09004 * 110.86265 * 308.19950 * 20 19 18 35 35 H 1.09005 * 110.85629 * 71.63685 * 20 19 18 36 36 H 1.09000 * 110.29097 * 144.70851 * 21 20 19 37 37 H 1.08999 * 110.29469 * 266.82203 * 21 20 19 38 38 H 1.08003 * 119.87604 * 0.16002 * 23 22 21 39 39 H 1.07998 * 120.04355 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.02170 * 180.02562 * 25 24 23 41 41 H 1.07996 * 119.86356 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0798 -1.2085 -0.1402 9 7 1.3349 -2.3840 0.1765 10 6 -0.0955 -2.4641 -0.1299 11 6 -0.8930 -2.1160 1.1006 12 8 -0.3248 -1.8309 2.1281 13 8 -2.2345 -2.1228 1.0550 14 6 1.9883 -3.4712 0.6322 15 8 1.4145 -4.5373 0.7052 16 6 3.4317 -3.3622 1.0512 17 1 3.6573 -2.5650 1.7595 18 6 4.2342 -4.6609 1.1688 19 6 4.4940 -3.7028 0.0129 20 6 4.1071 -4.0710 -1.4292 21 6 4.7846 -2.9482 -2.2457 22 6 5.9478 -2.4836 -1.3946 23 6 7.0653 -1.7392 -1.7326 24 6 8.0099 -1.4278 -0.7744 25 6 7.8396 -1.8601 0.5276 26 6 6.7261 -2.6027 0.8673 27 6 5.7776 -2.9176 -0.0917 28 1 -0.4849 0.8369 -0.0734 29 1 -0.3357 -1.7626 -0.9290 30 1 -0.3427 -3.4766 -0.4488 31 1 -2.7026 -1.8931 1.8694 32 1 3.7180 -5.5940 0.9435 33 1 4.9876 -4.7179 1.9545 34 1 4.5096 -5.0465 -1.7021 35 1 3.0249 -4.0499 -1.5580 36 1 5.1448 -3.3379 -3.1978 37 1 4.0866 -2.1278 -2.4122 38 1 7.1966 -1.3969 -2.7485 39 1 8.8805 -0.8473 -1.0420 40 1 8.5770 -1.6173 1.2785 41 1 6.5942 -2.9394 1.8849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:20 Heat of formation + Delta-G solvation = -61.589277 kcal Electronic energy + Delta-G solvation = -27089.375410 eV Core-core repulsion = 23321.263363 eV Total energy + Delta-G solvation = -3768.112048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40040 -39.21144 -38.21530 -36.34788 -35.12308 -34.48294 -33.40511 -31.54935 -30.43508 -28.61669 -28.09719 -25.08486 -24.58301 -22.96849 -22.45939 -20.76929 -20.53421 -19.52674 -18.86694 -17.01840 -16.80077 -16.17786 -16.10147 -15.45394 -15.12548 -14.93756 -14.55828 -14.39622 -14.32576 -14.27330 -13.66634 -13.30211 -12.85499 -12.84304 -12.37116 -11.97144 -11.83802 -11.71207 -11.48756 -11.44814 -11.24953 -11.12554 -10.95299 -10.82201 -10.62134 -10.53816 -10.48322 -10.25867 -9.92243 -9.80002 -9.52094 -9.05453 -8.74949 -8.55355 -8.07557 -7.97972 -6.47166 -4.08133 1.52704 1.59171 3.07517 3.17207 3.18825 3.46379 3.72459 3.90341 4.01867 4.26634 4.38789 4.63873 4.69556 4.91104 4.99912 5.13384 5.16651 5.28503 5.32129 5.41555 5.58132 5.71421 5.81536 5.89205 5.95343 6.10951 6.17109 6.23813 6.25640 6.36822 6.40069 6.46062 6.50572 6.62750 6.66926 6.69765 6.73181 6.88527 6.94580 7.20007 7.34223 7.57183 7.66888 8.25657 8.96071 9.21437 9.33616 9.72652 10.54654 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.005622 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.296492 B = 4979.355019 C = 6062.319613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.042 3.958 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.316 4.316 8 H 0.104 0.896 9 N -0.425 5.425 10 C 0.153 3.847 11 C 0.504 3.496 12 O -0.524 6.524 13 O -0.533 6.533 14 C 0.500 3.500 15 O -0.600 6.600 16 C -0.120 4.120 17 H 0.120 0.880 18 C -0.144 4.144 19 C -0.076 4.076 20 C -0.081 4.081 21 C -0.080 4.080 22 C -0.085 4.085 23 C -0.111 4.111 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.106 4.106 27 C -0.048 4.048 28 H 0.273 0.727 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.388 0.612 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -2.375 -3.427 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.161 4.161 3 Si 0.755 3.245 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.443 4.443 8 H 0.122 0.878 9 N -0.143 5.143 10 C 0.028 3.972 11 C 0.346 3.654 12 O -0.411 6.411 13 O -0.344 6.344 14 C 0.289 3.711 15 O -0.486 6.486 16 C -0.141 4.141 17 H 0.138 0.862 18 C -0.181 4.181 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.124 4.124 27 C -0.049 4.049 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.065 -2.734 -3.441 10.075 hybrid contribution 0.091 1.528 0.803 1.728 sum 9.157 -1.206 -2.638 9.605 Atomic orbital electron populations 1.69585 1.06186 1.28213 1.48776 1.25276 0.95522 0.99880 0.95422 0.85951 0.78947 0.80474 0.79129 1.19729 1.20852 1.19730 1.19661 0.93656 0.82264 1.48721 0.87847 1.43268 1.05961 1.09961 1.55117 1.20628 0.80904 1.01566 0.94097 1.23705 0.79363 0.71755 0.90592 1.90548 1.71083 1.45732 1.33769 1.84531 1.22713 1.83590 1.43545 1.19193 0.87413 0.84198 0.80268 1.90535 1.69581 1.28895 1.59598 1.22042 0.90725 0.99920 1.01405 0.86205 1.22918 1.01539 0.94781 0.98837 1.20292 0.93250 1.01686 0.92468 1.21753 1.01348 0.97606 0.91132 1.21085 0.94520 0.98853 0.97234 1.20628 0.95206 0.97198 0.95426 1.20566 0.93851 0.99059 0.99466 1.20952 0.99222 1.00810 0.93378 1.20931 0.97834 0.99091 0.96432 1.20594 0.93924 0.99013 0.98882 1.19766 0.93870 0.97423 0.93793 0.91545 0.84341 0.90567 0.75603 0.87561 0.88727 0.91002 0.89997 0.91082 0.89126 0.86502 0.86322 0.86276 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.45 8.21 55.50 0.46 -21.99 16 2 C 0.04 1.03 5.41 -17.46 -0.09 0.94 16 3 Si 0.93 19.95 29.56 -169.99 -5.03 14.93 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.32 -7.78 9.05 -14.93 -0.14 -7.91 16 8 H 0.10 2.48 6.95 -52.49 -0.36 2.11 16 9 N -0.43 -10.45 2.11 -116.09 -0.25 -10.69 16 10 C 0.15 3.65 5.29 -5.19 -0.03 3.63 16 11 C 0.50 12.31 6.29 36.01 0.23 12.53 16 12 O -0.52 -14.50 16.95 -18.75 -0.32 -14.81 16 13 O -0.53 -10.80 13.42 -39.25 -0.53 -11.33 16 14 C 0.50 11.94 5.92 -10.99 -0.07 11.88 16 15 O -0.60 -15.46 15.96 5.55 0.09 -15.37 16 16 C -0.12 -2.44 4.36 -92.02 -0.40 -2.84 16 17 H 0.12 2.50 8.10 -51.93 -0.42 2.08 16 18 C -0.14 -2.44 9.74 -27.00 -0.26 -2.70 16 19 C -0.08 -1.32 2.31 -155.82 -0.36 -1.68 16 20 C -0.08 -1.32 6.68 -25.55 -0.17 -1.49 16 21 C -0.08 -1.20 6.77 -26.75 -0.18 -1.38 16 22 C -0.08 -1.31 6.14 -104.13 -0.64 -1.95 16 23 C -0.11 -1.52 10.04 -39.55 -0.40 -1.92 16 24 C -0.13 -1.58 10.05 -39.62 -0.40 -1.98 16 25 C -0.12 -1.61 10.04 -39.63 -0.40 -2.01 16 26 C -0.11 -1.55 9.98 -39.54 -0.39 -1.94 16 27 C -0.05 -0.79 5.93 -104.40 -0.62 -1.41 16 28 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 29 H 0.14 3.31 6.28 -51.92 -0.33 2.99 16 30 H 0.08 1.73 7.36 -51.93 -0.38 1.35 16 31 H 0.39 6.13 9.10 45.56 0.41 6.54 16 32 H 0.11 1.86 7.78 -51.93 -0.40 1.46 16 33 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.51 6.85 -51.93 -0.36 1.15 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.54 8.05 -52.49 -0.42 1.12 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -31.05 347.07 -9.01 -40.07 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.36 Total: 14.20 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -4.32 Total: -0.23 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.21 Total: -32.69 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.76 Total: -41.51 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.05 -9.01 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.522 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds