Wall clock time and date at job start Tue Mar 31 2020 10:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47104 * 89.99880 * 3 2 1 5 5 H 1.48503 * 109.47233 * 210.00595 * 3 2 1 6 6 H 1.48502 * 109.46936 * 330.00022 * 3 2 1 7 7 C 1.38951 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00117 * 157.16482 * 7 2 1 9 9 N 1.37097 * 119.99889 * 337.15642 * 7 2 1 10 10 C 1.46507 * 119.99945 * 349.76515 * 9 7 2 11 11 C 1.50702 * 109.46691 * 91.87117 * 10 9 7 12 12 O 1.20822 * 120.00138 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99396 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00040 * 169.76611 * 9 7 2 15 15 O 1.21292 * 120.00309 * 0.02562 * 14 9 7 16 16 C 1.50702 * 119.99983 * 180.02562 * 14 9 7 17 17 H 1.09003 * 115.55760 * 312.11673 * 16 14 9 18 18 C 1.53123 * 117.51269 * 166.31914 * 16 14 9 19 19 C 1.52365 * 117.51776 * 97.85604 * 16 14 9 20 20 C 1.53784 * 121.20920 * 217.95774 * 19 16 14 21 21 C 1.54474 * 102.21102 * 170.00629 * 20 19 16 22 22 C 1.51432 * 105.23086 * 334.25688 * 21 20 19 23 23 C 1.38460 * 130.36350 * 196.83622 * 22 21 20 24 24 C 1.38096 * 120.26485 * 180.12066 * 23 22 21 25 25 C 1.38256 * 119.91319 * 359.97438 * 24 23 22 26 26 C 1.38085 * 119.93451 * 359.97438 * 25 24 23 27 27 C 1.38385 * 109.79485 * 16.90201 * 22 21 20 28 28 H 0.96996 * 119.99863 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47121 * 211.87120 * 10 9 7 30 30 H 1.08998 * 109.46718 * 331.87227 * 10 9 7 31 31 H 0.96701 * 116.99291 * 179.97438 * 13 11 10 32 32 H 1.08994 * 117.51791 * 359.97438 * 18 16 14 33 33 H 1.09004 * 117.51107 * 145.10771 * 18 16 14 34 34 H 1.09001 * 110.85885 * 288.19247 * 20 19 16 35 35 H 1.09003 * 110.85410 * 51.82987 * 20 19 16 36 36 H 1.09002 * 110.29362 * 215.31764 * 21 20 19 37 37 H 1.09000 * 110.29440 * 93.19258 * 21 20 19 38 38 H 1.08003 * 119.86801 * 0.14206 * 23 22 21 39 39 H 1.08002 * 120.04215 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.02861 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.85558 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4401 -0.7002 6 1 1.4456 2.6526 -0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0254 -1.2399 -0.3635 9 7 1.4040 -2.3443 0.4599 10 6 0.1177 -2.2615 1.1563 11 6 -1.0032 -2.4188 0.1613 12 8 -0.7532 -2.5827 -1.0093 13 8 -2.2792 -2.3758 0.5757 14 6 1.9927 -3.5420 0.2719 15 8 3.0578 -3.6105 -0.3043 16 6 1.3275 -4.7962 0.7775 17 1 0.9682 -4.7561 1.8058 18 6 1.8634 -6.1364 0.2663 19 6 0.5167 -5.6141 -0.2200 20 6 -0.7973 -6.2986 0.1921 21 6 -1.3653 -6.7613 -1.1678 22 6 -0.7722 -5.8141 -2.1897 23 6 -1.1519 -5.5508 -3.4949 24 6 -0.4502 -4.6339 -4.2524 25 6 0.6356 -3.9751 -3.7061 26 6 1.0156 -4.2350 -2.4043 27 6 0.3142 -5.1545 -1.6423 28 1 -0.4850 0.8400 -0.0004 29 1 0.0562 -3.0548 1.9014 30 1 0.0330 -1.2929 1.6490 31 1 -2.9636 -2.4812 -0.0993 32 1 2.6966 -6.1108 -0.4358 33 1 1.8568 -6.9783 0.9586 34 1 -0.6032 -7.1517 0.8422 35 1 -1.4706 -5.5886 0.6725 36 1 -2.4527 -6.6859 -1.1688 37 1 -1.0564 -7.7854 -1.3778 38 1 -2.0005 -6.0645 -3.9222 39 1 -0.7493 -4.4316 -5.2703 40 1 1.1859 -3.2580 -4.2970 41 1 1.8643 -3.7200 -1.9789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:22 Heat of formation + Delta-G solvation = -68.023877 kcal Electronic energy + Delta-G solvation = -28289.158786 eV Core-core repulsion = 24520.767713 eV Total energy + Delta-G solvation = -3768.391073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83304 -40.62782 -39.72751 -37.80709 -36.87524 -36.16139 -34.53070 -33.64349 -31.41855 -29.68681 -29.45958 -27.41919 -25.76130 -24.38416 -23.49552 -22.64891 -21.83615 -20.78441 -19.95807 -18.89900 -18.56968 -18.11261 -17.26440 -17.01670 -16.65323 -16.27763 -16.11673 -15.86735 -15.78398 -15.60584 -14.97174 -14.58214 -14.48131 -13.92829 -13.66727 -13.55566 -13.41498 -13.28316 -13.16376 -12.89848 -12.71347 -12.53935 -12.42116 -12.31053 -12.20536 -11.92494 -11.86983 -11.55531 -11.38669 -11.22799 -11.00221 -10.81229 -10.38215 -9.86979 -9.48367 -9.15789 -8.44292 -5.90189 0.53340 0.66721 1.32374 1.39002 1.49893 1.78873 2.01451 2.21918 2.57853 2.73173 2.97112 3.12307 3.24346 3.52417 3.67906 3.77399 3.97599 4.03198 4.16946 4.21024 4.35139 4.37716 4.52765 4.62147 4.70408 4.76790 4.82883 4.85715 4.92787 5.02009 5.06848 5.09381 5.22592 5.28528 5.33131 5.43737 5.45165 5.64999 5.80828 5.91387 6.00214 6.11965 6.28694 6.40970 7.12214 7.36460 7.63478 7.98625 8.60867 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.006260 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.879165 B = 4472.023881 C = 4610.185458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.336 4.336 8 H 0.074 0.926 9 N -0.433 5.433 10 C 0.145 3.855 11 C 0.492 3.508 12 O -0.514 6.514 13 O -0.526 6.526 14 C 0.483 3.517 15 O -0.624 6.624 16 C -0.182 4.182 17 H 0.146 0.854 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.076 4.076 21 C -0.068 4.068 22 C -0.103 4.103 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.147 4.147 26 C -0.093 4.093 27 C -0.067 4.067 28 H 0.273 0.727 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.407 0.593 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -11.967 2.759 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.150 5.150 10 C 0.019 3.981 11 C 0.332 3.668 12 O -0.400 6.400 13 O -0.338 6.338 14 C 0.274 3.726 15 O -0.512 6.512 16 C -0.203 4.203 17 H 0.163 0.837 18 C -0.156 4.156 19 C -0.069 4.069 20 C -0.113 4.113 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.166 4.166 26 C -0.111 4.111 27 C -0.067 4.067 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.265 0.735 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.119 0.881 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.172 -11.819 2.451 14.577 hybrid contribution 0.514 1.880 -0.998 2.189 sum -7.658 -9.940 1.453 12.631 Atomic orbital electron populations 1.69888 1.06484 1.28423 1.47521 1.25790 0.96091 1.01857 0.96022 0.85068 0.77781 0.77322 0.78925 1.18528 1.20729 1.20597 1.19514 0.97984 0.85649 1.43223 0.90837 1.43468 1.16927 1.05419 1.49232 1.20799 0.80348 1.04968 0.91962 1.23507 0.82892 0.70773 0.89625 1.90681 1.84228 1.45139 1.19987 1.84439 1.17224 1.86075 1.46105 1.19792 0.86260 0.84260 0.82310 1.90461 1.25914 1.86756 1.48063 1.22268 1.06286 0.91140 1.00620 0.83669 1.23027 0.94885 0.95260 1.02405 1.20617 0.95015 1.00875 0.90383 1.21935 0.91604 1.00260 0.97478 1.21069 1.00872 0.97766 0.90757 1.20949 0.95946 0.98138 0.95279 1.20764 1.00803 0.99173 0.93241 1.21162 0.95166 0.97100 1.00544 1.21002 0.99254 1.00747 0.95551 1.20907 0.99568 0.96289 0.94347 1.19680 0.96294 0.96450 0.94258 0.91693 0.87337 0.86824 0.73470 0.90895 0.83549 0.86825 0.90673 0.88847 0.88234 0.83563 0.84262 0.88069 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.76 9.03 21.66 0.20 -45.57 16 2 C 0.00 0.22 4.93 84.93 0.42 0.64 16 3 Si 0.98 42.91 29.61 68.60 2.03 44.95 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.34 -19.09 9.43 84.04 0.79 -18.30 16 8 H 0.07 4.58 7.31 -2.91 -0.02 4.56 16 9 N -0.43 -21.98 2.12 -639.58 -1.36 -23.34 16 10 C 0.14 6.23 5.03 85.63 0.43 6.66 16 11 C 0.49 21.04 6.46 71.24 0.46 21.50 16 12 O -0.51 -25.55 13.83 21.98 0.30 -25.24 16 13 O -0.53 -18.06 13.42 -51.45 -0.69 -18.75 16 14 C 0.48 23.76 5.12 87.66 0.45 24.21 16 15 O -0.62 -35.89 14.25 -3.07 -0.04 -35.93 16 16 C -0.18 -6.62 4.83 -11.71 -0.06 -6.67 16 17 H 0.15 4.23 7.04 -2.39 -0.02 4.21 16 18 C -0.12 -3.72 9.77 30.44 0.30 -3.42 16 19 C -0.07 -2.21 2.34 -53.03 -0.12 -2.34 16 20 C -0.08 -1.70 6.85 31.36 0.21 -1.49 16 21 C -0.07 -1.49 6.77 30.58 0.21 -1.28 16 22 C -0.10 -3.30 6.14 -19.54 -0.12 -3.42 16 23 C -0.12 -3.74 10.03 22.29 0.22 -3.52 16 24 C -0.12 -4.21 10.05 22.24 0.22 -3.98 16 25 C -0.15 -6.34 10.05 22.24 0.22 -6.12 16 26 C -0.09 -4.40 7.58 22.30 0.17 -4.23 16 27 C -0.07 -2.61 4.53 -19.73 -0.09 -2.70 16 28 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.11 3.73 6.33 -2.39 -0.02 3.72 16 30 H 0.11 5.17 6.22 -2.39 -0.01 5.16 16 31 H 0.41 10.93 9.10 -74.06 -0.67 10.26 16 32 H 0.07 2.77 7.74 -2.39 -0.02 2.75 16 33 H 0.15 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.11 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.09 5.16 4.67 -2.91 -0.01 5.14 16 Total: -1.00 -76.28 335.08 4.57 -71.71 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.41 Total: 36.65 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 3.72 Total: -4.48 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.16 Total: -68.90 kcal Atomic # 8 Polarization: -79.49 SS G_CDS: -0.43 Total: -79.92 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.95 kcal Total: -76.28 4.57 -71.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.685 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds