Wall clock time and date at job start Tue Mar 31 2020 12:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35742 * 116.99756 * 2 1 4 4 C 1.39288 * 120.84491 * 0.02562 * 3 2 1 5 5 C 1.37950 * 119.09198 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.59217 * 179.97438 * 5 4 3 7 7 N 1.31986 * 120.82187 * 359.97438 * 5 4 3 8 8 C 1.31942 * 121.86227 * 0.02562 * 7 5 4 9 9 C 1.50707 * 119.58872 * 179.97438 * 8 7 5 10 10 O 1.42898 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.35896 * 116.99435 * 179.97438 * 10 9 8 12 12 C 1.38827 * 120.02371 * 0.02562 * 11 10 9 13 13 C 1.38189 * 120.07970 * 179.74213 * 12 11 10 14 14 C 1.38150 * 120.12814 * 0.26171 * 13 12 11 15 15 C 1.38896 * 120.03743 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.04371 * 180.02562 * 15 14 13 17 17 C 1.34834 * 117.00669 * 174.46733 * 16 15 14 18 18 H 1.07999 * 119.99389 * 5.06001 * 17 16 15 19 19 C 1.38644 * 120.00140 * 185.06143 * 17 16 15 20 20 N 1.31561 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99823 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47088 * 59.99852 * 21 19 17 23 23 H 1.48500 * 109.46902 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46800 * 299.99640 * 21 19 17 25 25 C 1.38580 * 120.01785 * 180.25709 * 11 10 9 26 26 C 1.37990 * 120.82603 * 0.27113 * 8 7 5 27 27 H 1.08996 * 109.46936 * 299.99588 * 1 2 3 28 28 H 1.08991 * 109.47078 * 59.99902 * 1 2 3 29 29 H 1.08999 * 109.46627 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.45450 * 359.97438 * 4 3 2 31 31 H 1.08994 * 109.47616 * 270.02512 * 6 5 4 32 32 H 1.09000 * 109.46696 * 30.02364 * 6 5 4 33 33 H 1.08993 * 109.47433 * 150.02046 * 6 5 4 34 34 H 1.09004 * 109.46628 * 59.99763 * 9 8 7 35 35 H 1.08997 * 109.46892 * 299.99907 * 9 8 7 36 36 H 1.07992 * 119.95799 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.93592 * 180.27629 * 13 12 11 38 38 H 1.07994 * 119.98454 * 180.02562 * 14 13 12 39 39 H 0.97007 * 119.99982 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.06310 * 0.02562 * 25 11 10 41 41 H 1.07998 * 120.46012 * 179.71162 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9674 3.5981 0.0011 6 6 1.1765 4.8809 0.0011 7 7 3.2864 3.6458 0.0016 8 6 4.0230 2.5511 0.0011 9 6 5.5257 2.6653 0.0011 10 8 6.1027 1.3580 0.0011 11 6 7.4596 1.2826 0.0006 12 6 8.2198 2.4443 0.0006 13 6 9.5997 2.3690 0.0055 14 6 10.2270 1.1381 0.0049 15 6 9.4714 -0.0273 0.0000 16 8 10.0876 -1.2369 -0.0001 17 6 9.2998 -2.3255 0.1108 18 1 8.2253 -2.2164 0.1122 19 6 9.8690 -3.5847 0.2231 20 7 11.1779 -3.7175 0.2210 21 14 8.7774 -5.0929 0.3760 22 1 7.9076 -5.1979 -0.8229 23 1 9.6242 -6.3081 0.4820 24 1 7.9327 -4.9713 1.5914 25 6 8.0853 0.0461 -0.0047 26 6 3.4346 1.3030 -0.0056 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 0.2244 2.3566 0.0005 31 1 0.9858 5.1902 -1.0265 32 1 0.2283 4.7229 0.5149 33 1 1.7433 5.6572 0.5149 34 1 5.8490 3.2049 0.8914 35 1 5.8490 3.2055 -0.8886 36 1 7.7323 3.4078 0.0015 37 1 10.1888 3.2742 0.0100 38 1 11.3054 1.0820 0.0091 39 1 11.5761 -4.5986 0.2992 40 1 7.4955 -0.8586 -0.0089 41 1 4.0432 0.4108 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:44 Heat of formation + Delta-G solvation = -39.293827 kcal Electronic energy + Delta-G solvation = -24737.125515 eV Core-core repulsion = 20969.980271 eV Total energy + Delta-G solvation = -3767.145244 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97342 -39.63287 -38.66561 -38.01761 -35.71396 -33.47510 -32.24619 -31.80856 -29.96408 -28.71219 -28.28633 -28.05611 -26.37835 -25.31933 -22.44777 -22.33746 -21.76562 -20.72979 -18.28969 -18.12233 -17.67083 -16.99964 -16.25760 -15.83763 -15.74648 -15.67898 -15.32171 -15.12786 -14.51768 -14.41613 -14.27380 -14.07295 -13.58734 -13.57910 -13.08161 -12.82905 -12.74511 -12.57769 -12.30846 -12.13163 -12.04153 -11.60449 -11.49181 -11.43826 -11.03236 -10.95838 -10.59117 -10.40110 -10.35049 -9.73260 -9.43806 -9.14619 -8.97197 -8.81996 -7.71946 -7.25133 -6.44379 -4.03797 0.85376 1.14463 2.22321 2.34083 2.83384 3.13838 3.16431 3.17531 3.19861 3.50076 3.98739 4.21068 4.35760 4.56553 4.59069 4.74225 4.76679 4.93967 4.96466 5.09347 5.09900 5.18925 5.26596 5.27067 5.32112 5.35909 5.45875 5.55339 5.67992 5.77655 5.81815 5.98977 6.13319 6.24379 6.29438 6.41722 6.67386 6.95986 7.02039 7.09675 7.23864 7.42734 7.55177 7.81141 8.00003 8.02865 9.01282 9.68835 10.73196 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.003194 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.357237 B = 8763.912296 C =10909.017229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.171 3.829 4 C -0.266 4.266 5 C 0.165 3.835 6 C -0.102 4.102 7 N -0.504 5.504 8 C 0.168 3.832 9 C 0.117 3.883 10 O -0.317 6.317 11 C 0.168 3.832 12 C -0.296 4.296 13 C -0.043 4.043 14 C -0.219 4.219 15 C 0.183 3.817 16 O -0.170 6.170 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.262 4.262 26 C -0.185 4.185 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.271 0.729 40 H 0.135 0.865 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.031 12.791 -0.294 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.118 3.882 4 C -0.287 4.287 5 C 0.027 3.973 6 C -0.160 4.160 7 N -0.219 5.219 8 C 0.033 3.967 9 C 0.041 3.959 10 O -0.231 6.231 11 C 0.123 3.877 12 C -0.316 4.316 13 C -0.062 4.062 14 C -0.239 4.239 15 C 0.129 3.871 16 O -0.073 6.073 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.282 4.282 26 C -0.206 4.206 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.153 0.847 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.271 12.909 -0.294 24.034 hybrid contribution -1.268 -1.311 0.067 1.825 sum -21.539 11.598 -0.227 24.464 Atomic orbital electron populations 1.23137 0.77901 1.04417 1.01500 1.86126 1.21772 1.26205 1.87670 1.19337 0.92365 0.84498 0.92034 1.21971 1.01250 0.92628 1.12855 1.20935 0.89266 0.94659 0.92458 1.20711 0.98561 0.93464 1.03222 1.67072 1.06530 1.31597 1.16729 1.20527 0.95053 0.87863 0.93304 1.21016 0.86975 0.84635 1.03290 1.85915 1.19288 1.28420 1.89469 1.18567 0.80023 0.94077 0.95008 1.20663 0.94847 0.96148 1.19922 1.20407 0.93426 0.96258 0.96081 1.20174 0.99511 0.90181 1.14004 1.19019 0.89875 0.87232 0.91009 1.84002 1.35053 1.10409 1.77848 1.21334 0.90572 0.82715 1.52278 0.88865 1.25291 0.96438 0.98268 0.96366 1.70035 1.09423 1.24560 1.45645 0.85782 0.78981 0.79381 0.79347 1.19400 1.20278 1.19400 1.20309 0.94250 0.95948 1.17710 1.21330 0.91802 1.00717 1.06730 0.92394 0.92402 0.87796 0.84424 0.90207 0.90759 0.90131 0.89572 0.89570 0.86889 0.86659 0.86333 0.91924 0.84730 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.60 10.51 -18.93 -0.20 -3.80 16 3 C 0.17 2.15 6.74 -38.82 -0.26 1.89 16 4 C -0.27 -2.73 8.74 -39.30 -0.34 -3.08 16 5 C 0.16 1.80 6.78 -82.63 -0.56 1.24 16 6 C -0.10 -0.72 10.17 36.00 0.37 -0.35 16 7 N -0.50 -6.69 10.19 -5.81 -0.06 -6.75 16 8 C 0.17 2.39 6.78 -82.63 -0.56 1.83 16 9 C 0.12 1.67 5.28 36.01 0.19 1.86 16 10 O -0.32 -5.59 8.58 -19.41 -0.17 -5.76 16 11 C 0.17 3.31 6.68 -39.24 -0.26 3.05 16 12 C -0.30 -5.26 9.04 -39.38 -0.36 -5.61 16 13 C -0.04 -0.78 10.03 -39.63 -0.40 -1.18 16 14 C -0.22 -4.68 9.99 -39.37 -0.39 -5.07 16 15 C 0.18 4.51 6.65 -39.13 -0.26 4.25 16 16 O -0.17 -4.90 9.76 0.04 0.00 -4.90 16 17 C -0.39 -11.12 9.49 30.88 0.29 -10.83 16 18 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 19 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 20 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 21 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.26 -5.99 9.10 -39.25 -0.36 -6.35 16 26 C -0.19 -2.67 9.38 -39.30 -0.37 -3.04 16 27 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 28 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.14 0.98 6.47 -52.49 -0.34 0.64 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.14 7.66 -51.93 -0.40 0.74 16 35 H 0.09 1.14 7.66 -51.93 -0.40 0.74 16 36 H 0.11 1.66 6.29 -52.49 -0.33 1.33 16 37 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.14 3.14 5.64 -52.49 -0.30 2.85 16 41 H 0.16 2.39 7.00 -52.49 -0.37 2.03 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -32.80 352.00 -6.63 -39.43 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.87 Total: 4.50 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.37 Total: -19.19 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.70 Total: -31.36 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.37 Total: -14.46 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.80 -6.63 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.132 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds