Wall clock time and date at job start Tue Mar 31 2020 12:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35742 * 116.99756 * 2 1 4 4 C 1.39288 * 120.84491 * 0.02562 * 3 2 1 5 5 C 1.37950 * 119.09198 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.59217 * 179.97438 * 5 4 3 7 7 N 1.31986 * 120.82187 * 359.97438 * 5 4 3 8 8 C 1.31942 * 121.86227 * 0.02562 * 7 5 4 9 9 C 1.50707 * 119.58872 * 179.97438 * 8 7 5 10 10 O 1.42898 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.35896 * 116.99435 * 179.97438 * 10 9 8 12 12 C 1.38827 * 120.02371 * 0.02562 * 11 10 9 13 13 C 1.38189 * 120.07970 * 179.74213 * 12 11 10 14 14 C 1.38150 * 120.12814 * 0.26171 * 13 12 11 15 15 C 1.38896 * 120.03743 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.04371 * 180.02562 * 15 14 13 17 17 C 1.34834 * 117.00669 * 174.46733 * 16 15 14 18 18 H 1.07999 * 119.99389 * 5.06001 * 17 16 15 19 19 C 1.38644 * 120.00140 * 185.06143 * 17 16 15 20 20 N 1.31561 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99823 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47088 * 59.99852 * 21 19 17 23 23 H 1.48500 * 109.46902 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46800 * 299.99640 * 21 19 17 25 25 C 1.38580 * 120.01785 * 180.25709 * 11 10 9 26 26 C 1.37990 * 120.82603 * 0.27113 * 8 7 5 27 27 H 1.08996 * 109.46936 * 299.99588 * 1 2 3 28 28 H 1.08991 * 109.47078 * 59.99902 * 1 2 3 29 29 H 1.08999 * 109.46627 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.45450 * 359.97438 * 4 3 2 31 31 H 1.08994 * 109.47616 * 270.02512 * 6 5 4 32 32 H 1.09000 * 109.46696 * 30.02364 * 6 5 4 33 33 H 1.08993 * 109.47433 * 150.02046 * 6 5 4 34 34 H 1.09004 * 109.46628 * 59.99763 * 9 8 7 35 35 H 1.08997 * 109.46892 * 299.99907 * 9 8 7 36 36 H 1.07992 * 119.95799 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.93592 * 180.27629 * 13 12 11 38 38 H 1.07994 * 119.98454 * 180.02562 * 14 13 12 39 39 H 0.97007 * 119.99982 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.06310 * 0.02562 * 25 11 10 41 41 H 1.07998 * 120.46012 * 179.71162 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9674 3.5981 0.0011 6 6 1.1765 4.8809 0.0011 7 7 3.2864 3.6458 0.0016 8 6 4.0230 2.5511 0.0011 9 6 5.5257 2.6653 0.0011 10 8 6.1027 1.3580 0.0011 11 6 7.4596 1.2826 0.0006 12 6 8.2198 2.4443 0.0006 13 6 9.5997 2.3690 0.0055 14 6 10.2270 1.1381 0.0049 15 6 9.4714 -0.0273 0.0000 16 8 10.0876 -1.2369 -0.0001 17 6 9.2998 -2.3255 0.1108 18 1 8.2253 -2.2164 0.1122 19 6 9.8690 -3.5847 0.2231 20 7 11.1779 -3.7175 0.2210 21 14 8.7774 -5.0929 0.3760 22 1 7.9076 -5.1979 -0.8229 23 1 9.6242 -6.3081 0.4820 24 1 7.9327 -4.9713 1.5914 25 6 8.0853 0.0461 -0.0047 26 6 3.4346 1.3030 -0.0056 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 0.2244 2.3566 0.0005 31 1 0.9858 5.1902 -1.0265 32 1 0.2283 4.7229 0.5149 33 1 1.7433 5.6572 0.5149 34 1 5.8490 3.2049 0.8914 35 1 5.8490 3.2055 -0.8886 36 1 7.7323 3.4078 0.0015 37 1 10.1888 3.2742 0.0100 38 1 11.3054 1.0820 0.0091 39 1 11.5761 -4.5986 0.2992 40 1 7.4955 -0.8586 -0.0089 41 1 4.0432 0.4108 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:41 Heat of formation + Delta-G solvation = -60.682347 kcal Electronic energy + Delta-G solvation = -24738.052991 eV Core-core repulsion = 20969.980271 eV Total energy + Delta-G solvation = -3768.072720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90040 -41.17038 -39.93307 -39.31874 -37.36674 -34.43755 -34.23660 -32.70202 -31.44972 -30.35967 -29.20542 -28.83272 -27.40752 -27.23271 -23.63924 -23.57073 -23.06053 -22.14229 -19.97919 -19.60171 -18.74534 -18.15653 -17.21891 -17.21101 -16.87884 -16.81729 -16.77310 -16.67342 -16.04207 -15.56013 -15.51788 -15.25151 -15.14484 -14.64085 -14.51363 -14.16555 -13.84425 -13.67877 -13.44013 -13.14063 -13.07757 -12.99800 -12.75615 -12.62146 -12.37388 -12.22661 -12.19668 -12.04574 -11.81587 -11.38448 -10.80084 -10.67669 -9.99709 -9.92160 -9.39657 -8.96984 -8.49616 -6.18595 -0.06544 0.22194 0.57462 0.67094 1.33273 1.44020 1.49273 1.88342 2.09461 2.16686 2.58312 2.79531 3.13102 3.24801 3.49465 3.52974 3.78169 3.95447 4.06064 4.11343 4.20985 4.25189 4.25807 4.29867 4.32564 4.45113 4.52158 4.60416 4.63806 4.71074 4.78944 4.81912 4.87738 5.01263 5.06179 5.09656 5.18359 5.40324 5.48634 5.61458 5.65175 5.91579 6.00717 6.17253 6.49879 6.88229 6.94905 7.72177 8.72812 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.003194 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.357237 B = 8763.912296 C =10909.017229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.165 3.835 4 C -0.256 4.256 5 C 0.159 3.841 6 C -0.099 4.099 7 N -0.518 5.518 8 C 0.157 3.843 9 C 0.113 3.887 10 O -0.327 6.327 11 C 0.169 3.831 12 C -0.272 4.272 13 C -0.027 4.027 14 C -0.234 4.234 15 C 0.150 3.850 16 O -0.222 6.222 17 C -0.417 4.417 18 H 0.097 0.903 19 C -0.017 4.017 20 N -0.916 5.916 21 Si 1.015 2.985 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.282 4.282 26 C -0.218 4.218 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.175 0.825 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.121 0.879 39 H 0.275 0.725 40 H 0.115 0.885 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.388 15.739 -0.228 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.111 3.889 4 C -0.277 4.277 5 C 0.021 3.979 6 C -0.156 4.156 7 N -0.234 5.234 8 C 0.022 3.978 9 C 0.038 3.962 10 O -0.240 6.240 11 C 0.124 3.876 12 C -0.291 4.291 13 C -0.044 4.044 14 C -0.253 4.253 15 C 0.099 3.901 16 O -0.128 6.128 17 C -0.493 4.493 18 H 0.114 0.886 19 C -0.215 4.215 20 N -0.554 5.554 21 Si 0.834 3.166 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.184 1.184 25 C -0.302 4.302 26 C -0.239 4.239 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.192 0.808 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.672 15.914 -0.231 28.525 hybrid contribution -0.475 -1.864 0.033 1.924 sum -24.147 14.050 -0.198 27.938 Atomic orbital electron populations 1.23500 0.75310 1.06107 1.03061 1.86101 1.24532 1.26223 1.87486 1.19454 0.91969 0.85707 0.91748 1.22314 1.02919 0.91325 1.11118 1.21685 0.88802 0.96563 0.90806 1.20843 0.99026 0.91290 1.04487 1.67132 1.07779 1.30883 1.17593 1.20467 0.95020 0.88135 0.94209 1.21267 0.87346 0.82950 1.04631 1.85928 1.18072 1.31071 1.88963 1.18589 0.81284 0.93633 0.94110 1.21210 0.94790 0.97080 1.16018 1.20950 0.93940 0.96466 0.93080 1.20487 0.99845 0.90526 1.14481 1.19565 0.91055 0.87149 0.92368 1.83962 1.36244 1.11673 1.80880 1.21746 0.91003 0.83544 1.53020 0.88593 1.26530 0.98050 1.01309 0.95645 1.70165 1.11506 1.25514 1.48201 0.84710 0.77094 0.74997 0.79820 1.18328 1.19041 1.18395 1.20287 0.93848 0.96961 1.19059 1.21268 0.93081 1.00126 1.09382 0.90743 0.90755 0.86285 0.80818 0.88779 0.88072 0.90204 0.88069 0.88032 0.82479 0.81699 0.86109 0.91638 0.86689 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.84 113.37 1.12 1.27 16 2 O -0.33 -7.54 10.51 -90.67 -0.95 -8.50 16 3 C 0.16 4.00 6.74 22.77 0.15 4.16 16 4 C -0.26 -4.55 8.74 22.45 0.20 -4.35 16 5 C 0.16 3.02 6.78 42.47 0.29 3.31 16 6 C -0.10 -1.01 10.17 71.23 0.72 -0.28 16 7 N -0.52 -12.71 10.19 -172.31 -1.76 -14.47 16 8 C 0.16 4.33 6.78 42.49 0.29 4.62 16 9 C 0.11 3.04 5.28 71.24 0.38 3.41 16 10 O -0.33 -11.51 8.58 -92.38 -0.79 -12.30 16 11 C 0.17 6.60 6.68 22.49 0.15 6.75 16 12 C -0.27 -8.76 9.04 22.40 0.20 -8.56 16 13 C -0.03 -0.87 10.03 22.24 0.22 -0.65 16 14 C -0.23 -10.03 9.99 22.41 0.22 -9.81 16 15 C 0.15 7.76 6.65 22.56 0.15 7.91 16 16 O -0.22 -13.69 9.76 -22.79 -0.22 -13.92 16 17 C -0.42 -25.25 9.49 67.92 0.64 -24.61 16 18 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.00 5.49 84.83 0.47 -0.54 16 20 N -0.92 -56.99 13.67 21.61 0.30 -56.70 16 21 Si 1.01 44.39 29.55 68.60 2.03 46.42 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 25 C -0.28 -13.48 9.10 22.49 0.20 -13.27 16 26 C -0.22 -6.39 9.38 22.45 0.21 -6.18 16 27 H 0.07 0.58 7.71 -2.39 -0.02 0.56 16 28 H 0.07 0.58 7.71 -2.39 -0.02 0.56 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.17 1.69 6.47 -2.91 -0.02 1.67 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 2.39 7.66 -2.38 -0.02 2.37 16 35 H 0.10 2.39 7.66 -2.39 -0.02 2.37 16 36 H 0.16 3.74 6.29 -2.91 -0.02 3.73 16 37 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 40 H 0.12 5.83 5.64 -2.91 -0.02 5.81 16 41 H 0.13 4.34 7.00 -2.91 -0.02 4.32 16 Total: -1.00 -78.50 352.00 5.28 -73.22 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.06 Total: 23.06 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 5.62 Total: -36.83 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.46 Total: -71.16 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.97 Total: -34.71 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -78.50 5.28 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.538 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds