Wall clock time and date at job start Tue Mar 31 2020 11:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48504 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47570 * 300.00280 * 3 2 1 6 6 H 1.48500 * 109.47015 * 60.00170 * 3 2 1 7 7 C 1.40121 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00271 * 180.02562 * 7 2 1 9 9 C 1.46204 * 120.00222 * 359.97438 * 7 2 1 10 10 O 1.21730 * 119.99474 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99898 * 180.02562 * 9 7 2 12 12 C 1.39073 * 119.99755 * 185.27955 * 11 9 7 13 13 C 1.39282 * 119.93167 * 33.64089 * 12 11 9 14 14 C 1.37602 * 120.06532 * 180.02562 * 13 12 11 15 15 C 1.39832 * 119.93430 * 359.97438 * 14 13 12 16 16 C 1.47470 * 120.06804 * 179.97438 * 15 14 13 17 17 O 1.21502 * 119.99649 * 0.02562 * 16 15 14 18 18 O 1.34747 * 120.00053 * 179.97438 * 16 15 14 19 19 C 1.45200 * 117.00252 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47539 * 180.02562 * 19 18 16 21 21 C 1.54630 * 111.03754 * 287.02497 * 20 19 18 22 22 C 1.51106 * 104.72708 * 217.33216 * 21 20 19 23 23 C 1.30523 * 111.10293 * 16.43730 * 22 21 20 24 24 C 1.51100 * 111.10346 * 359.97438 * 23 22 21 25 25 C 1.39835 * 119.86849 * 0.25705 * 15 14 13 26 26 C 1.37615 * 119.92878 * 359.52645 * 25 15 14 27 27 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00054 * 5.27924 * 11 9 7 29 29 H 1.07997 * 119.96644 * 0.02562 * 13 12 11 30 30 H 1.08000 * 120.03175 * 179.97438 * 14 13 12 31 31 H 1.09005 * 109.47113 * 300.00638 * 19 18 16 32 32 H 1.08996 * 109.46975 * 60.00001 * 19 18 16 33 33 H 1.09000 * 110.91291 * 51.03142 * 20 19 18 34 34 H 1.09002 * 110.38979 * 336.14646 * 21 20 19 35 35 H 1.08999 * 110.38986 * 98.51744 * 21 20 19 36 36 H 1.08001 * 124.44584 * 196.45649 * 22 21 20 37 37 H 1.07999 * 124.44615 * 180.02562 * 23 22 21 38 38 H 1.09003 * 110.38432 * 224.75522 * 24 23 22 39 39 H 1.09002 * 110.39131 * 102.37836 * 24 23 22 40 40 H 1.07999 * 120.04116 * 179.75403 * 25 15 14 41 41 H 1.07990 * 119.96685 * 180.20881 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0069 -1.2135 -0.0005 8 1 3.0869 -1.2135 -0.0001 9 6 1.2759 -2.4797 -0.0005 10 8 0.0586 -2.4796 -0.0005 11 7 1.9499 -3.6468 -0.0005 12 6 1.2590 -4.8487 -0.1114 13 6 0.0985 -4.9150 -0.8788 14 6 -0.5875 -6.1026 -0.9899 15 6 -0.1183 -7.2437 -0.3319 16 6 -0.8516 -8.5179 -0.4485 17 8 -1.8643 -8.5769 -1.1173 18 8 -0.3980 -9.6167 0.1858 19 6 -1.1700 -10.8361 0.0260 20 6 -0.5057 -11.9673 0.8133 21 6 0.7902 -12.4423 0.1162 22 6 0.8114 -13.9389 0.3235 23 6 -0.3638 -14.3807 0.6804 24 6 -1.3646 -13.2523 0.7711 25 6 1.0443 -7.1728 0.4418 26 6 1.7286 -5.9834 0.5456 27 1 -0.4850 0.8400 -0.0004 28 1 2.9167 -3.6486 0.0767 29 1 -0.2631 -4.0335 -1.3872 30 1 -1.4875 -6.1533 -1.5848 31 1 -2.1811 -10.6777 0.4011 32 1 -1.2119 -11.1037 -1.0298 33 1 -0.3086 -11.6624 1.8411 34 1 0.7574 -12.2068 -0.9476 35 1 1.6621 -11.9822 0.5811 36 1 1.6845 -14.5613 0.1938 37 1 -0.5908 -15.4166 0.8848 38 1 -1.9578 -13.3431 1.6811 39 1 -2.0117 -13.2470 -0.1060 40 1 1.4070 -8.0515 0.9545 41 1 2.6284 -5.9288 1.1402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849633208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:27 Heat of formation + Delta-G solvation = -87.284812 kcal Electronic energy + Delta-G solvation = -24409.163632 eV Core-core repulsion = 20639.937343 eV Total energy + Delta-G solvation = -3769.226290 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.43697 -39.31530 -38.79166 -36.99993 -36.12811 -33.66421 -32.59250 -31.27998 -30.52618 -29.49422 -28.50715 -26.63657 -25.46782 -23.35190 -22.39527 -20.90761 -20.50781 -19.89772 -19.11507 -17.89942 -17.44110 -17.03770 -16.53752 -16.32217 -16.01245 -15.60151 -15.14638 -14.50001 -14.13335 -13.94956 -13.51847 -13.25891 -13.08581 -13.02517 -12.72046 -12.66401 -12.47412 -12.16661 -12.05090 -11.89081 -11.59930 -11.48817 -11.36203 -11.25691 -11.18714 -10.81761 -10.69754 -10.53264 -10.38813 -10.28996 -9.51293 -9.23116 -9.01764 -8.63305 -7.90682 -7.32028 -6.45719 -4.93792 1.14194 1.85531 1.91944 2.70948 2.85825 3.01125 3.09088 3.13412 3.90022 4.12203 4.23499 4.24743 4.40852 4.44831 4.51792 4.88839 4.91904 5.04172 5.09639 5.20874 5.32214 5.35237 5.39149 5.39968 5.49129 5.51267 5.63323 5.68488 5.76594 5.89797 5.97033 6.07031 6.18396 6.39135 6.43360 6.53970 6.60732 6.84228 6.88908 7.15428 7.20603 7.57432 7.86425 7.96932 8.01763 8.74047 9.03220 10.23612 10.44411 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.002084 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.739072 B =13434.939045 C =13891.225664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.537 3.463 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.236 3.764 13 C -0.147 4.147 14 C -0.029 4.029 15 C -0.188 4.188 16 C 0.517 3.483 17 O -0.521 6.521 18 O -0.354 6.354 19 C 0.077 3.923 20 C -0.094 4.094 21 C -0.097 4.097 22 C -0.164 4.164 23 C -0.171 4.171 24 C -0.094 4.094 25 C -0.035 4.035 26 C -0.196 4.196 27 H 0.273 0.727 28 H 0.397 0.603 29 H 0.147 0.853 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.070 -21.725 1.274 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.134 3.866 13 C -0.168 4.168 14 C -0.048 4.048 15 C -0.190 4.190 16 C 0.364 3.636 17 O -0.411 6.411 18 O -0.272 6.272 19 C 0.003 3.997 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.181 4.181 23 C -0.189 4.189 24 C -0.131 4.131 25 C -0.054 4.054 26 C -0.217 4.217 27 H 0.084 0.916 28 H 0.231 0.769 29 H 0.165 0.835 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.148 0.852 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.734 -21.501 1.078 21.598 hybrid contribution 0.808 0.639 0.073 1.033 sum 2.542 -20.861 1.151 21.047 Atomic orbital electron populations 1.69980 1.07208 1.27977 1.33174 1.25768 0.94749 1.00669 0.92494 0.86191 0.80425 0.81038 0.78475 1.18573 1.19902 1.19926 1.20909 0.93939 0.88829 1.53390 0.90741 1.18486 0.87567 0.82039 0.77433 1.90662 1.13591 1.85856 1.53488 1.44310 1.10074 1.04534 1.74627 1.18299 0.92207 0.86469 0.89594 1.21298 0.96753 0.98197 1.00553 1.21048 0.98010 0.90432 0.95316 1.18783 0.99947 0.90842 1.09461 1.21264 0.82696 0.83870 0.75731 1.90799 1.25260 1.85603 1.39487 1.86540 1.53946 1.18657 1.68011 1.22999 0.94630 0.81457 1.00576 1.22059 0.95708 0.92907 1.00539 1.21461 0.97961 0.92918 1.01061 1.23352 0.98052 0.96733 1.00010 1.23222 0.95256 0.98920 1.01481 1.21327 0.97510 0.91593 1.02634 1.21022 0.92453 0.97307 0.94631 1.20859 1.03696 0.92970 1.04218 0.91576 0.76899 0.83495 0.85164 0.91079 0.91141 0.88862 0.90399 0.90488 0.85827 0.85760 0.90597 0.90290 0.85201 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.29 11.82 55.55 0.66 -20.63 16 2 C 0.08 2.21 5.50 -17.36 -0.10 2.12 16 3 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.54 -13.98 9.54 -35.68 -0.34 -14.32 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.54 14.21 7.46 -13.06 -0.10 14.11 16 10 O -0.55 -16.66 12.69 5.16 0.07 -16.59 16 11 N -0.69 -14.59 5.30 -11.18 -0.06 -14.65 16 12 C 0.24 4.65 6.27 -83.80 -0.53 4.12 16 13 C -0.15 -3.03 8.62 -39.43 -0.34 -3.37 16 14 C -0.03 -0.53 9.58 -39.22 -0.38 -0.90 16 15 C -0.19 -3.14 5.88 -104.94 -0.62 -3.76 16 16 C 0.52 8.35 7.89 34.49 0.27 8.62 16 17 O -0.52 -9.51 16.13 -19.27 -0.31 -9.82 16 18 O -0.35 -4.74 9.43 -40.62 -0.38 -5.13 16 19 C 0.08 0.83 4.78 37.16 0.18 1.01 16 20 C -0.09 -0.80 3.42 -88.92 -0.30 -1.10 16 21 C -0.10 -0.80 6.35 -26.83 -0.17 -0.97 16 22 C -0.16 -1.20 10.78 -35.69 -0.38 -1.59 16 23 C -0.17 -1.19 10.78 -35.70 -0.38 -1.58 16 24 C -0.09 -0.67 6.38 -26.84 -0.17 -0.84 16 25 C -0.04 -0.53 9.60 -39.21 -0.38 -0.90 16 26 C -0.20 -3.14 9.94 -39.43 -0.39 -3.53 16 27 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 28 H 0.40 6.96 8.79 -40.82 -0.36 6.61 16 29 H 0.15 3.43 6.41 -52.49 -0.34 3.09 16 30 H 0.13 2.29 7.64 -52.49 -0.40 1.89 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 40 H 0.13 1.60 7.60 -52.49 -0.40 1.20 16 41 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -32.32 355.90 -9.04 -41.36 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.22 Total: 9.16 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.12 Total: -2.88 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.60 Total: -35.29 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.63 Total: -31.53 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.32 -9.04 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849633208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.929 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds