Wall clock time and date at job start Tue Mar 31 2020 11:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48495 * 109.47464 * 240.00176 * 3 2 1 5 5 H 1.48497 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47073 * 120.00365 * 3 2 1 7 7 C 1.38659 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99948 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99559 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99658 * 185.06015 * 9 7 2 11 11 C 1.38879 * 120.06578 * 354.46087 * 10 9 7 12 12 C 1.38104 * 119.92582 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07123 * 0.03092 * 12 11 10 14 14 C 1.50696 * 119.93115 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47350 * 89.99610 * 14 13 12 16 16 O 1.21279 * 119.99896 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00155 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00206 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47412 * 179.97438 * 18 17 15 20 20 C 1.50693 * 109.46983 * 179.97438 * 19 18 17 21 21 C 1.41390 * 126.58014 * 90.00498 * 20 19 18 22 22 C 1.34514 * 106.83926 * 180.25810 * 21 20 19 23 23 O 1.34301 * 108.41967 * 359.63317 * 22 21 20 24 24 C 1.34297 * 109.48199 * 0.37483 * 23 22 21 25 25 C 1.38299 * 120.13732 * 0.24484 * 13 12 11 26 26 C 1.38109 * 120.07061 * 359.45391 * 25 13 12 27 27 H 0.96998 * 119.99895 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.03785 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96550 * 179.97438 * 12 11 10 30 30 H 1.09001 * 109.47095 * 329.99710 * 14 13 12 31 31 H 1.09003 * 109.47144 * 209.99607 * 14 13 12 32 32 H 0.96997 * 119.99831 * 359.97438 * 17 15 14 33 33 H 1.08994 * 109.47304 * 59.99440 * 18 17 15 34 34 H 1.09003 * 109.46865 * 299.99826 * 18 17 15 35 35 H 1.09007 * 109.46768 * 59.99638 * 19 18 17 36 36 H 1.08998 * 109.46742 * 299.99742 * 19 18 17 37 37 H 1.07995 * 126.57861 * 359.97438 * 21 20 19 38 38 H 1.07996 * 125.78465 * 179.77040 * 22 21 20 39 39 H 1.07996 * 125.79181 * 179.79054 * 24 23 22 40 40 H 1.07999 * 119.96431 * 179.71138 * 25 13 12 41 41 H 1.07995 * 120.03628 * 180.26868 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4394 0.0921 12 6 4.2026 -4.5971 0.1998 13 6 3.5689 -5.8205 0.3203 14 6 4.3852 -7.0819 0.4369 15 6 4.6647 -7.3668 1.8901 16 8 4.2430 -6.6189 2.7467 17 7 5.3842 -8.4521 2.2378 18 6 5.6554 -8.7294 3.6505 19 6 6.4843 -10.0099 3.7690 20 6 6.7638 -10.2947 5.2221 21 6 5.9657 -11.0659 6.0983 22 6 6.5795 -11.0555 7.2952 23 8 7.7046 -10.3299 7.1889 24 6 7.8200 -9.8635 5.9348 25 6 2.1876 -5.8892 0.3283 26 6 1.4367 -4.7346 0.2273 27 1 -0.4850 0.8400 0.0004 28 1 3.9527 -2.4844 -0.0025 29 1 5.2813 -4.5472 0.1889 30 1 5.3274 -6.9555 -0.0963 31 1 3.8312 -7.9145 0.0034 32 1 5.7217 -9.0500 1.5527 33 1 4.7131 -8.8563 4.1833 34 1 6.2087 -7.8965 4.0845 35 1 7.4267 -9.8833 3.2360 36 1 5.9305 -10.8425 3.3351 37 1 5.0388 -11.5635 5.8546 38 1 6.2282 -11.5491 8.1893 39 1 8.6245 -9.2471 5.5617 40 1 1.6957 -6.8465 0.4178 41 1 0.3581 -4.7885 0.2380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855771916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:26 Heat of formation + Delta-G solvation = -29.761741 kcal Electronic energy + Delta-G solvation = -23954.401121 eV Core-core repulsion = 20187.669219 eV Total energy + Delta-G solvation = -3766.731902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.90284 -39.75628 -38.74307 -36.60311 -35.86395 -33.76345 -32.42603 -31.51694 -30.69147 -30.08797 -28.78448 -26.55478 -25.11042 -23.55628 -21.96796 -21.91169 -21.10486 -20.68531 -19.91798 -17.92068 -17.80212 -16.99388 -16.74078 -16.37621 -15.92374 -15.74705 -15.04366 -14.79723 -14.54165 -14.24318 -14.06938 -13.69445 -13.50692 -13.29756 -13.16642 -12.90416 -12.74219 -12.63044 -12.42751 -12.39454 -11.82726 -11.54428 -11.36421 -11.20742 -10.79406 -10.70198 -10.58721 -10.39242 -10.05492 -9.66743 -9.27217 -9.11800 -8.90845 -8.76337 -8.08732 -7.10204 -6.39283 -3.97809 1.40688 2.18048 2.31183 2.33822 2.79290 2.82739 3.16227 3.17540 3.20741 3.27999 4.01759 4.38359 4.47427 4.58530 4.67328 4.74469 4.93460 5.05458 5.14037 5.19187 5.30434 5.34103 5.37707 5.39810 5.44154 5.70253 5.72167 5.78208 5.81231 5.85159 5.91102 6.11345 6.27700 6.37761 6.48034 6.74696 6.76628 6.97786 7.11245 7.29864 7.43115 7.48460 7.52017 7.90401 8.05994 8.37475 9.06326 9.77336 10.78846 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.002002 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.961811 B =13984.062924 C =14547.633144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.507 3.493 16 O -0.519 6.519 17 N -0.743 5.743 18 C 0.125 3.875 19 C -0.059 4.059 20 C -0.179 4.179 21 C -0.208 4.208 22 C -0.042 4.042 23 O -0.178 6.178 24 C -0.035 4.035 25 C -0.060 4.060 26 C -0.191 4.191 27 H 0.270 0.730 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.148 0.852 38 H 0.202 0.798 39 H 0.202 0.798 40 H 0.108 0.892 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.259 -22.994 6.862 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.294 3.706 16 O -0.393 6.393 17 N -0.397 5.397 18 C 0.001 3.999 19 C -0.097 4.097 20 C -0.180 4.180 21 C -0.227 4.227 22 C -0.109 4.109 23 O -0.073 6.073 24 C -0.103 4.103 25 C -0.078 4.078 26 C -0.211 4.211 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.166 0.834 38 H 0.219 0.781 39 H 0.219 0.781 40 H 0.126 0.874 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.695 -22.138 7.712 27.668 hybrid contribution 0.520 0.428 -0.341 0.755 sum 15.215 -21.710 7.371 27.517 Atomic orbital electron populations 1.70032 1.05933 1.27683 1.46250 1.25284 0.95847 0.98803 0.96643 0.85786 0.78686 0.79824 0.79153 1.19537 1.20314 1.19521 1.21275 0.91766 0.80877 1.52792 0.89154 1.83977 1.34324 1.11435 1.78464 1.19383 0.90298 0.88031 0.92037 1.21103 0.93813 0.98752 1.11503 1.20508 0.98022 0.91792 0.97206 1.18637 0.93218 0.92807 1.12449 1.20407 1.01185 0.98072 0.92265 1.21075 0.77339 0.79991 0.92192 1.90756 1.49651 1.46822 1.52067 1.46098 1.57193 1.28303 1.08129 1.21253 0.99761 0.96327 0.82572 1.20128 1.00667 0.97646 0.91258 1.20242 0.97036 1.03576 0.97190 1.21781 1.02642 1.04865 0.93378 1.24048 0.86990 0.99432 1.00460 1.84080 1.38884 1.53501 1.30836 1.23926 1.01724 1.02781 0.81838 1.20403 0.92781 0.96703 0.97952 1.20156 0.99480 0.90293 1.11142 0.92036 0.85604 0.87843 0.89028 0.88992 0.76886 0.91531 0.91620 0.90417 0.90251 0.83386 0.78119 0.78134 0.87398 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.39 -11.27 9.49 30.89 0.29 -10.97 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -5.28 9.76 0.03 0.00 -5.28 16 10 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 12 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 13 C -0.17 -3.02 4.38 -104.58 -0.46 -3.48 16 14 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 15 C 0.51 7.08 7.82 -10.99 -0.09 6.99 16 16 O -0.52 -10.10 16.03 5.56 0.09 -10.01 16 17 N -0.74 -7.07 5.56 -60.30 -0.33 -7.40 16 18 C 0.12 1.18 5.66 -4.04 -0.02 1.16 16 19 C -0.06 -0.38 5.85 -27.89 -0.16 -0.54 16 20 C -0.18 -1.40 5.42 -104.74 -0.57 -1.96 16 21 C -0.21 -1.58 10.87 -39.70 -0.43 -2.01 16 22 C -0.04 -0.29 12.09 29.42 0.36 0.06 16 23 O -0.18 -1.52 10.65 5.73 0.06 -1.46 16 24 C -0.03 -0.26 12.01 29.42 0.35 0.09 16 25 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 26 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 29 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.40 2.35 8.47 -40.82 -0.35 2.01 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.20 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -36.69 361.33 -6.90 -43.59 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.12 Total: 4.75 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -2.77 Total: -20.51 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.42 Total: -32.57 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.15 Total: -16.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.69 -6.90 -43.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855771916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.825 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds