Wall clock time and date at job start Tue Mar 31 2020 11:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48495 * 109.47464 * 240.00176 * 3 2 1 5 5 H 1.48497 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47073 * 120.00365 * 3 2 1 7 7 C 1.38659 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99948 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99559 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99658 * 185.06015 * 9 7 2 11 11 C 1.38879 * 120.06578 * 354.46087 * 10 9 7 12 12 C 1.38104 * 119.92582 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07123 * 0.03092 * 12 11 10 14 14 C 1.50696 * 119.93115 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47350 * 89.99610 * 14 13 12 16 16 O 1.21279 * 119.99896 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00155 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00206 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47412 * 179.97438 * 18 17 15 20 20 C 1.50693 * 109.46983 * 179.97438 * 19 18 17 21 21 C 1.41390 * 126.58014 * 90.00498 * 20 19 18 22 22 C 1.34514 * 106.83926 * 180.25810 * 21 20 19 23 23 O 1.34301 * 108.41967 * 359.63317 * 22 21 20 24 24 C 1.34297 * 109.48199 * 0.37483 * 23 22 21 25 25 C 1.38299 * 120.13732 * 0.24484 * 13 12 11 26 26 C 1.38109 * 120.07061 * 359.45391 * 25 13 12 27 27 H 0.96998 * 119.99895 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.03785 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.96550 * 179.97438 * 12 11 10 30 30 H 1.09001 * 109.47095 * 329.99710 * 14 13 12 31 31 H 1.09003 * 109.47144 * 209.99607 * 14 13 12 32 32 H 0.96997 * 119.99831 * 359.97438 * 17 15 14 33 33 H 1.08994 * 109.47304 * 59.99440 * 18 17 15 34 34 H 1.09003 * 109.46865 * 299.99826 * 18 17 15 35 35 H 1.09007 * 109.46768 * 59.99638 * 19 18 17 36 36 H 1.08998 * 109.46742 * 299.99742 * 19 18 17 37 37 H 1.07995 * 126.57861 * 359.97438 * 21 20 19 38 38 H 1.07996 * 125.78465 * 179.77040 * 22 21 20 39 39 H 1.07996 * 125.79181 * 179.79054 * 24 23 22 40 40 H 1.07999 * 119.96431 * 179.71138 * 25 13 12 41 41 H 1.07995 * 120.03628 * 180.26868 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4573 -3.4394 0.0921 12 6 4.2026 -4.5971 0.1998 13 6 3.5689 -5.8205 0.3203 14 6 4.3852 -7.0819 0.4369 15 6 4.6647 -7.3668 1.8901 16 8 4.2430 -6.6189 2.7467 17 7 5.3842 -8.4521 2.2378 18 6 5.6554 -8.7294 3.6505 19 6 6.4843 -10.0099 3.7690 20 6 6.7638 -10.2947 5.2221 21 6 5.9657 -11.0659 6.0983 22 6 6.5795 -11.0555 7.2952 23 8 7.7046 -10.3299 7.1889 24 6 7.8200 -9.8635 5.9348 25 6 2.1876 -5.8892 0.3283 26 6 1.4367 -4.7346 0.2273 27 1 -0.4850 0.8400 0.0004 28 1 3.9527 -2.4844 -0.0025 29 1 5.2813 -4.5472 0.1889 30 1 5.3274 -6.9555 -0.0963 31 1 3.8312 -7.9145 0.0034 32 1 5.7217 -9.0500 1.5527 33 1 4.7131 -8.8563 4.1833 34 1 6.2087 -7.8965 4.0845 35 1 7.4267 -9.8833 3.2360 36 1 5.9305 -10.8425 3.3351 37 1 5.0388 -11.5635 5.8546 38 1 6.2282 -11.5491 8.1893 39 1 8.6245 -9.2471 5.5617 40 1 1.6957 -6.8465 0.4178 41 1 0.3581 -4.7885 0.2380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855771916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:25 Heat of formation + Delta-G solvation = -55.309928 kcal Electronic energy + Delta-G solvation = -23955.508974 eV Core-core repulsion = 20187.669219 eV Total energy + Delta-G solvation = -3767.839755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.43939 -41.06084 -40.35108 -38.25282 -36.76510 -34.54483 -34.38126 -32.89051 -31.77149 -31.41710 -29.54748 -28.03357 -26.94358 -24.38928 -23.62662 -22.49503 -22.46719 -21.54333 -20.87824 -19.83611 -18.85392 -18.41345 -17.72153 -17.21679 -16.76950 -16.73003 -16.34694 -16.19648 -15.82151 -15.50971 -15.48428 -15.25612 -14.91989 -14.61699 -14.39465 -14.12143 -13.68663 -13.61995 -13.47548 -13.32364 -13.06187 -12.94778 -12.75255 -12.44969 -12.29601 -12.22374 -12.13703 -12.04776 -11.17510 -10.94001 -10.75095 -10.57313 -10.04527 -9.75284 -9.43920 -8.88886 -8.46962 -6.15209 0.62429 0.68383 0.87872 1.33512 1.44909 1.50410 1.63617 1.76809 2.17878 2.27980 2.39875 2.86420 3.18679 3.53523 3.88492 3.90453 3.98418 4.06653 4.07707 4.19018 4.20509 4.32285 4.35900 4.52306 4.60867 4.63161 4.74604 4.80329 4.82687 4.85198 5.06019 5.11815 5.15256 5.21739 5.31948 5.34277 5.51778 5.57674 5.61678 5.72484 5.79347 6.03140 6.21483 6.24701 6.68560 6.97298 7.41359 7.78960 8.76302 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.002002 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.961811 B =13984.062924 C =14547.633144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.245 4.245 12 C -0.061 4.061 13 C -0.146 4.146 14 C -0.077 4.077 15 C 0.508 3.492 16 O -0.585 6.585 17 N -0.717 5.717 18 C 0.128 3.872 19 C -0.046 4.046 20 C -0.196 4.196 21 C -0.227 4.227 22 C -0.048 4.048 23 O -0.195 6.195 24 C -0.046 4.046 25 C -0.059 4.059 26 C -0.208 4.208 27 H 0.273 0.727 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.420 0.580 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.158 0.842 38 H 0.229 0.771 39 H 0.224 0.776 40 H 0.147 0.853 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.386 -25.805 6.398 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.264 4.264 12 C -0.079 4.079 13 C -0.147 4.147 14 C -0.116 4.116 15 C 0.296 3.704 16 O -0.464 6.464 17 N -0.372 5.372 18 C 0.004 3.996 19 C -0.083 4.083 20 C -0.197 4.197 21 C -0.246 4.246 22 C -0.115 4.115 23 O -0.091 6.091 24 C -0.113 4.113 25 C -0.077 4.077 26 C -0.227 4.227 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.258 0.742 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.175 0.825 38 H 0.246 0.754 39 H 0.240 0.760 40 H 0.165 0.835 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.884 -25.063 7.219 31.624 hybrid contribution -0.320 0.885 -0.132 0.950 sum 17.564 -24.178 7.086 30.713 Atomic orbital electron populations 1.70184 1.08014 1.28838 1.48943 1.26633 0.96926 1.02804 0.95897 0.84635 0.77389 0.74170 0.79910 1.17849 1.19443 1.18478 1.21782 0.92482 0.81533 1.53295 0.88278 1.83937 1.35943 1.12581 1.81632 1.19949 0.91697 0.87981 0.94341 1.21240 0.93123 1.00057 1.11990 1.20957 0.99750 0.91151 0.96056 1.19298 0.93363 0.94709 1.07303 1.20542 1.02724 0.96327 0.91992 1.21250 0.76970 0.80142 0.92084 1.90762 1.52626 1.49288 1.53761 1.45842 1.55291 1.27141 1.08895 1.21206 0.99020 0.97372 0.82051 1.20054 1.01237 0.96186 0.90837 1.20518 0.97294 1.03909 0.98022 1.22082 1.03279 1.05421 0.93854 1.24669 0.86408 0.98913 1.01471 1.84078 1.39581 1.53924 1.31478 1.24465 1.02457 1.02809 0.81548 1.20898 0.93603 0.96922 0.96260 1.20452 0.99892 0.90751 1.11584 0.91840 0.86485 0.84286 0.85084 0.84936 0.74183 0.93705 0.93290 0.88240 0.88847 0.82464 0.75425 0.75959 0.83520 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.50 13.67 21.61 0.30 -58.20 16 2 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 3 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 4 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 8 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 9 O -0.23 -14.86 9.76 -22.81 -0.22 -15.08 16 10 C 0.11 5.89 6.65 22.58 0.15 6.04 16 11 C -0.24 -11.44 9.17 22.39 0.21 -11.24 16 12 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 13 C -0.15 -4.69 4.38 -19.84 -0.09 -4.77 16 14 C -0.08 -1.48 5.83 29.10 0.17 -1.31 16 15 C 0.51 12.20 7.82 87.66 0.69 12.89 16 16 O -0.59 -21.77 16.03 -3.03 -0.05 -21.82 16 17 N -0.72 -10.64 5.56 -463.07 -2.57 -13.21 16 18 C 0.13 2.12 5.66 86.38 0.49 2.61 16 19 C -0.05 -0.44 5.85 29.85 0.17 -0.27 16 20 C -0.20 -2.68 5.42 -19.94 -0.11 -2.79 16 21 C -0.23 -3.13 10.87 22.19 0.24 -2.89 16 22 C -0.05 -0.61 12.09 66.97 0.81 0.20 16 23 O -0.19 -3.11 10.65 -2.41 -0.03 -3.13 16 24 C -0.05 -0.61 12.01 66.97 0.80 0.20 16 25 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 26 C -0.21 -9.53 9.99 22.39 0.22 -9.30 16 27 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 29 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.13 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.13 1.64 8.08 -2.39 -0.02 1.62 16 32 H 0.42 2.56 8.47 -92.71 -0.79 1.78 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.23 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.22 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -88.59 361.33 5.03 -83.56 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.28 Total: 21.63 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 5.30 Total: -40.27 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -2.28 Total: -71.41 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.30 Total: -40.04 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -88.59 5.03 -83.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855771916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.255 kcal (2) G-P(sol) polarization free energy of solvation -88.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds