Wall clock time and date at job start Tue Mar 31 2020 12:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34520 * 125.78862 * 2 1 4 4 C 1.41382 * 106.83898 * 179.74792 * 3 2 1 5 5 C 1.34514 * 106.84360 * 0.37631 * 4 3 2 6 6 C 1.50693 * 125.79370 * 179.88768 * 5 4 3 7 7 H 1.09004 * 109.47061 * 24.71583 * 6 5 4 8 8 O 1.42897 * 109.47352 * 144.71241 * 6 5 4 9 9 C 1.52997 * 109.47293 * 264.71888 * 6 5 4 10 10 N 1.46504 * 109.47327 * 180.02562 * 9 6 5 11 11 C 1.34775 * 120.00020 * 179.97438 * 10 9 6 12 12 O 1.21617 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47433 * 120.00159 * 179.97438 * 11 10 9 14 14 C 1.39222 * 120.27950 * 355.67294 * 13 11 10 15 15 C 1.38228 * 120.09079 * 180.27937 * 14 13 11 16 16 C 1.38824 * 120.67423 * 359.71805 * 15 14 13 17 17 C 1.37597 * 120.57318 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87929 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.32596 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99615 * 216.32947 * 19 18 17 21 21 C 1.40267 * 120.00197 * 36.33258 * 19 18 17 22 22 N 1.30625 * 120.00058 * 190.50733 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 10.50211 * 21 19 18 24 24 H 1.48509 * 109.46965 * 267.22708 * 23 21 19 25 25 H 1.48499 * 109.47061 * 27.22336 * 23 21 19 26 26 H 1.48502 * 109.47123 * 147.22806 * 23 21 19 27 27 O 1.34301 * 125.79106 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47127 * 299.99853 * 1 2 3 30 30 H 1.09008 * 109.47025 * 59.99666 * 1 2 3 31 31 H 1.07995 * 126.58037 * 0.02562 * 3 2 1 32 32 H 1.07999 * 126.57890 * 180.23615 * 4 3 2 33 33 H 0.96703 * 114.00069 * 60.00573 * 8 6 5 34 34 H 1.08992 * 109.47736 * 59.99651 * 9 6 5 35 35 H 1.09004 * 109.47211 * 299.99474 * 9 6 5 36 36 H 0.97001 * 119.99703 * 359.97438 * 10 9 6 37 37 H 1.08001 * 119.95839 * 359.97438 * 14 13 11 38 38 H 1.08003 * 119.66408 * 179.73476 * 15 14 13 39 39 H 1.08000 * 119.71145 * 180.02562 * 16 15 14 40 40 H 1.07996 * 120.06329 * 180.02562 * 17 16 15 41 41 H 0.97003 * 120.00012 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0060 5 6 3.5814 -0.7121 0.0008 6 6 4.7705 -1.6378 0.0018 7 1 5.6291 -1.1259 0.4366 8 8 4.4680 -2.8011 0.7746 9 6 5.0968 -2.0505 -1.4349 10 7 6.2525 -2.9509 -1.4338 11 6 6.7222 -3.4458 -2.5961 12 8 6.1870 -3.1446 -3.6458 13 6 7.8856 -4.3515 -2.5951 14 6 8.5587 -4.6283 -1.4083 15 6 9.6525 -5.4735 -1.4129 16 6 10.0896 -6.0598 -2.5929 17 6 9.4416 -5.8095 -3.7806 18 6 8.3256 -4.9528 -3.8033 19 6 7.6547 -4.6904 -5.0141 20 1 7.2490 -3.7078 -5.2047 21 6 7.5136 -5.7053 -5.9720 22 7 7.0794 -5.4172 -7.1698 23 14 7.9469 -7.4690 -5.5349 24 1 9.3595 -7.7383 -5.9060 25 1 7.7710 -7.6746 -4.0748 26 1 7.0550 -8.3963 -6.2765 27 8 2.2924 -1.0894 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9665 2.1204 0.0004 32 1 4.5212 1.2434 0.0111 33 1 3.7129 -3.3071 0.4447 34 1 5.3276 -1.1633 -2.0244 35 1 4.2383 -2.5625 -1.8697 36 1 6.6796 -3.1909 -0.5966 37 1 8.2289 -4.1782 -0.4836 38 1 10.1722 -5.6801 -0.4889 39 1 10.9457 -6.7180 -2.5785 40 1 9.7885 -6.2703 -4.6937 41 1 6.9815 -6.1191 -7.8321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866654050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:26 Heat of formation + Delta-G solvation = -51.279065 kcal Electronic energy + Delta-G solvation = -25273.165702 eV Core-core repulsion = 21505.500738 eV Total energy + Delta-G solvation = -3767.664963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.81263 -39.19563 -37.76079 -36.74539 -34.03483 -33.49590 -33.31232 -32.39964 -30.49935 -30.42886 -29.05523 -26.23394 -25.17002 -23.07777 -22.12344 -22.02129 -20.92931 -20.44426 -19.52426 -17.92653 -17.56568 -16.94751 -16.33024 -15.80203 -15.65047 -15.36412 -14.90372 -14.49836 -14.09123 -14.03550 -13.90183 -13.52806 -13.39412 -13.32375 -13.17321 -13.00738 -12.65915 -12.44233 -12.28546 -12.12488 -11.87128 -11.64739 -11.44886 -10.94282 -10.71965 -10.55210 -10.43644 -10.17554 -10.04720 -9.80545 -9.25619 -8.56916 -8.48546 -8.42830 -7.81676 -7.59107 -6.90309 -4.48761 1.46279 2.10180 2.38968 2.59064 2.60781 3.08630 3.17416 3.29020 3.77726 3.94826 3.99956 4.16203 4.43781 4.59574 4.63179 4.75193 4.83535 4.93156 5.14605 5.14935 5.38715 5.39313 5.59077 5.68748 5.73559 5.81839 5.88393 5.91673 5.97926 6.09113 6.32347 6.38799 6.51310 6.79459 6.92210 7.00665 7.09768 7.22804 7.34843 7.39717 7.59333 7.75374 8.01799 8.29398 8.47605 8.63791 8.86247 9.33272 10.06433 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.003112 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.527904 B = 8996.008618 C = 9891.275595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.213 4.213 4 C -0.193 4.193 5 C -0.043 4.043 6 C 0.186 3.814 7 H 0.131 0.869 8 O -0.548 6.548 9 C 0.097 3.903 10 N -0.743 5.743 11 C 0.561 3.439 12 O -0.528 6.528 13 C -0.249 4.249 14 C -0.040 4.040 15 C -0.254 4.254 16 C -0.065 4.065 17 C -0.226 4.226 18 C 0.117 3.883 19 C -0.402 4.402 20 H 0.124 0.876 21 C 0.079 3.921 22 N -0.793 5.793 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.242 1.242 26 H -0.289 1.289 27 O -0.169 6.169 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.385 0.615 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 7.664 13.836 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.232 4.232 4 C -0.213 4.213 5 C -0.094 4.094 6 C 0.126 3.874 7 H 0.149 0.851 8 O -0.354 6.354 9 C -0.028 4.028 10 N -0.399 5.399 11 C 0.355 3.645 12 O -0.406 6.406 13 C -0.254 4.254 14 C -0.059 4.059 15 C -0.273 4.273 16 C -0.084 4.084 17 C -0.245 4.245 18 C 0.112 3.888 19 C -0.429 4.429 20 H 0.141 0.859 21 C -0.142 4.142 22 N -0.417 5.417 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.165 1.165 26 H -0.216 1.216 27 O -0.066 6.066 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.232 0.768 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.405 7.768 13.104 17.398 hybrid contribution -0.008 -0.754 0.080 0.759 sum -8.412 7.014 13.184 17.140 Atomic orbital electron populations 1.20318 0.85046 1.04140 1.03550 1.22494 0.94049 0.84136 1.05488 1.21552 0.92603 0.99479 1.09605 1.21591 0.98495 0.93618 1.07561 1.23075 0.83530 0.95303 1.07499 1.20724 0.90745 0.83832 0.92125 0.85117 1.86561 1.54827 1.38647 1.55324 1.21794 0.90763 0.95412 0.94793 1.45847 1.33060 1.50959 1.10084 1.18375 0.83691 0.80088 0.82364 1.90737 1.60008 1.59279 1.30538 1.19361 1.00992 1.11073 0.93936 1.20798 0.94397 0.95327 0.95381 1.20297 1.02598 1.07422 0.97031 1.20746 0.97603 0.97004 0.93034 1.21149 0.99313 1.07011 0.96993 1.17554 0.90279 0.89088 0.91878 1.20199 1.26402 1.00868 0.95417 0.85867 1.26384 0.92172 1.02139 0.93481 1.69571 1.32248 1.36454 1.03389 0.86392 0.78296 0.80716 0.81323 1.19408 1.16521 1.21607 1.83921 1.16020 1.35200 1.71466 0.90501 0.89707 0.89570 0.83382 0.83162 0.76677 0.90629 0.91366 0.76811 0.88555 0.88487 0.88562 0.87779 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.42 36.00 0.38 -0.12 16 2 C -0.01 -0.12 7.32 -35.62 -0.26 -0.38 16 3 C -0.21 -2.22 10.81 -39.70 -0.43 -2.65 16 4 C -0.19 -2.15 10.81 -39.70 -0.43 -2.58 16 5 C -0.04 -0.52 6.20 -35.63 -0.22 -0.74 16 6 C 0.19 2.15 3.51 -27.89 -0.10 2.05 16 7 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 8 O -0.55 -6.49 13.06 -40.03 -0.52 -7.02 16 9 C 0.10 1.43 5.32 -4.04 -0.02 1.41 16 10 N -0.74 -12.68 5.40 -61.38 -0.33 -13.01 16 11 C 0.56 12.73 7.72 -12.52 -0.10 12.63 16 12 O -0.53 -14.05 13.54 5.26 0.07 -13.98 16 13 C -0.25 -5.83 5.92 -104.37 -0.62 -6.45 16 14 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 15 C -0.25 -5.00 10.03 -39.37 -0.39 -5.40 16 16 C -0.07 -1.36 10.01 -39.60 -0.40 -1.76 16 17 C -0.23 -5.35 7.00 -38.88 -0.27 -5.62 16 18 C 0.12 3.02 5.03 -106.54 -0.54 2.48 16 19 C -0.40 -11.33 8.31 -37.82 -0.31 -11.65 16 20 H 0.12 3.84 5.96 -52.48 -0.31 3.53 16 21 C 0.08 2.11 5.47 -17.30 -0.09 2.02 16 22 N -0.79 -21.66 13.92 55.56 0.77 -20.89 16 23 Si 0.91 20.82 24.52 -169.99 -4.17 16.65 16 24 H -0.27 -5.85 6.76 56.52 0.38 -5.47 16 25 H -0.24 -5.69 6.73 56.52 0.38 -5.31 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 O -0.17 -2.10 10.52 0.90 0.01 -2.09 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.38 3.83 8.93 45.56 0.41 4.24 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 5.88 6.40 -40.82 -0.26 5.62 16 37 H 0.10 1.57 6.42 -52.49 -0.34 1.23 16 38 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 2.43 5.01 -52.49 -0.26 2.17 16 41 H 0.29 7.02 8.29 -40.82 -0.34 6.69 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -32.46 347.05 -7.29 -39.75 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.17 Total: 13.28 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -4.18 Total: -17.93 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.44 Total: -33.90 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.44 Total: -23.09 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.46 -7.29 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866654050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.530 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds