Wall clock time and date at job start Tue Mar 31 2020 12:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34520 * 125.78862 * 2 1 4 4 C 1.41382 * 106.83898 * 179.74792 * 3 2 1 5 5 C 1.34514 * 106.84360 * 0.37631 * 4 3 2 6 6 C 1.50693 * 125.79370 * 179.88768 * 5 4 3 7 7 H 1.09004 * 109.47061 * 24.71583 * 6 5 4 8 8 O 1.42897 * 109.47352 * 144.71241 * 6 5 4 9 9 C 1.52997 * 109.47293 * 264.71888 * 6 5 4 10 10 N 1.46504 * 109.47327 * 180.02562 * 9 6 5 11 11 C 1.34775 * 120.00020 * 179.97438 * 10 9 6 12 12 O 1.21617 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47433 * 120.00159 * 179.97438 * 11 10 9 14 14 C 1.39222 * 120.27950 * 355.67294 * 13 11 10 15 15 C 1.38228 * 120.09079 * 180.27937 * 14 13 11 16 16 C 1.38824 * 120.67423 * 359.71805 * 15 14 13 17 17 C 1.37597 * 120.57318 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87929 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.32596 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99615 * 216.32947 * 19 18 17 21 21 C 1.40267 * 120.00197 * 36.33258 * 19 18 17 22 22 N 1.30625 * 120.00058 * 190.50733 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 10.50211 * 21 19 18 24 24 H 1.48509 * 109.46965 * 267.22708 * 23 21 19 25 25 H 1.48499 * 109.47061 * 27.22336 * 23 21 19 26 26 H 1.48502 * 109.47123 * 147.22806 * 23 21 19 27 27 O 1.34301 * 125.79106 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47127 * 299.99853 * 1 2 3 30 30 H 1.09008 * 109.47025 * 59.99666 * 1 2 3 31 31 H 1.07995 * 126.58037 * 0.02562 * 3 2 1 32 32 H 1.07999 * 126.57890 * 180.23615 * 4 3 2 33 33 H 0.96703 * 114.00069 * 60.00573 * 8 6 5 34 34 H 1.08992 * 109.47736 * 59.99651 * 9 6 5 35 35 H 1.09004 * 109.47211 * 299.99474 * 9 6 5 36 36 H 0.97001 * 119.99703 * 359.97438 * 10 9 6 37 37 H 1.08001 * 119.95839 * 359.97438 * 14 13 11 38 38 H 1.08003 * 119.66408 * 179.73476 * 15 14 13 39 39 H 1.08000 * 119.71145 * 180.02562 * 16 15 14 40 40 H 1.07996 * 120.06329 * 180.02562 * 17 16 15 41 41 H 0.97003 * 120.00012 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0060 5 6 3.5814 -0.7121 0.0008 6 6 4.7705 -1.6378 0.0018 7 1 5.6291 -1.1259 0.4366 8 8 4.4680 -2.8011 0.7746 9 6 5.0968 -2.0505 -1.4349 10 7 6.2525 -2.9509 -1.4338 11 6 6.7222 -3.4458 -2.5961 12 8 6.1870 -3.1446 -3.6458 13 6 7.8856 -4.3515 -2.5951 14 6 8.5587 -4.6283 -1.4083 15 6 9.6525 -5.4735 -1.4129 16 6 10.0896 -6.0598 -2.5929 17 6 9.4416 -5.8095 -3.7806 18 6 8.3256 -4.9528 -3.8033 19 6 7.6547 -4.6904 -5.0141 20 1 7.2490 -3.7078 -5.2047 21 6 7.5136 -5.7053 -5.9720 22 7 7.0794 -5.4172 -7.1698 23 14 7.9469 -7.4690 -5.5349 24 1 9.3595 -7.7383 -5.9060 25 1 7.7710 -7.6746 -4.0748 26 1 7.0550 -8.3963 -6.2765 27 8 2.2924 -1.0894 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9665 2.1204 0.0004 32 1 4.5212 1.2434 0.0111 33 1 3.7129 -3.3071 0.4447 34 1 5.3276 -1.1633 -2.0244 35 1 4.2383 -2.5625 -1.8697 36 1 6.6796 -3.1909 -0.5966 37 1 8.2289 -4.1782 -0.4836 38 1 10.1722 -5.6801 -0.4889 39 1 10.9457 -6.7180 -2.5785 40 1 9.7885 -6.2703 -4.6937 41 1 6.9815 -6.1191 -7.8321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866654050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:23 Heat of formation + Delta-G solvation = -75.497665 kcal Electronic energy + Delta-G solvation = -25274.215899 eV Core-core repulsion = 21505.500738 eV Total energy + Delta-G solvation = -3768.715161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.64956 -40.88574 -39.10041 -38.26822 -35.74054 -35.11214 -34.20051 -33.23607 -32.29323 -32.00341 -30.17944 -27.53572 -26.71397 -24.35366 -23.63899 -22.86510 -22.65214 -21.44950 -21.01892 -19.51395 -18.79598 -18.52651 -17.30461 -17.19613 -16.89829 -16.67463 -16.37317 -15.81222 -15.73839 -15.49541 -15.37226 -15.09988 -14.50330 -14.22966 -14.15025 -14.02527 -13.84573 -13.80797 -13.77227 -13.45533 -13.16987 -12.81540 -12.70871 -12.59637 -12.51574 -12.19135 -12.04973 -11.62530 -11.52719 -11.08505 -10.88741 -10.37293 -10.07990 -9.51885 -9.41561 -9.31050 -8.82687 -6.48951 0.33898 0.60991 0.84308 1.23544 1.37001 1.46346 1.56677 1.76913 2.09775 2.23944 2.42785 2.70969 3.23493 3.53137 3.53576 3.63699 3.88921 4.04830 4.08647 4.23030 4.26526 4.44402 4.47790 4.61197 4.67801 4.70129 4.74726 4.81299 4.82862 4.86040 5.01739 5.03120 5.19699 5.30054 5.46588 5.51285 5.57383 5.69287 5.87349 5.96489 6.09521 6.27506 6.45730 6.48038 6.65883 6.78727 6.89633 7.60300 8.21668 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.003112 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.527904 B = 8996.008618 C = 9891.275595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 C -0.227 4.227 4 C -0.196 4.196 5 C -0.069 4.069 6 C 0.204 3.796 7 H 0.154 0.846 8 O -0.552 6.552 9 C 0.099 3.901 10 N -0.718 5.718 11 C 0.554 3.446 12 O -0.579 6.579 13 C -0.265 4.265 14 C -0.038 4.038 15 C -0.230 4.230 16 C -0.061 4.061 17 C -0.247 4.247 18 C 0.099 3.901 19 C -0.451 4.451 20 H 0.072 0.928 21 C 0.035 3.965 22 N -0.850 5.850 23 Si 0.967 3.033 24 H -0.247 1.247 25 H -0.249 1.249 26 H -0.280 1.280 27 O -0.188 6.188 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.392 0.608 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.412 0.588 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 6.986 18.029 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.246 4.246 4 C -0.215 4.215 5 C -0.119 4.119 6 C 0.144 3.856 7 H 0.171 0.829 8 O -0.359 6.359 9 C -0.026 4.026 10 N -0.374 5.374 11 C 0.347 3.653 12 O -0.460 6.460 13 C -0.270 4.270 14 C -0.057 4.057 15 C -0.249 4.249 16 C -0.080 4.080 17 C -0.266 4.266 18 C 0.095 3.905 19 C -0.480 4.480 20 H 0.090 0.910 21 C -0.179 4.179 22 N -0.476 5.476 23 Si 0.790 3.210 24 H -0.172 1.172 25 H -0.173 1.173 26 H -0.207 1.207 27 O -0.085 6.085 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.188 0.812 32 H 0.185 0.815 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.250 0.750 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.149 7.102 17.359 20.072 hybrid contribution -0.366 -0.394 -0.879 1.031 sum -7.515 6.708 16.480 19.315 Atomic orbital electron populations 1.20508 0.82551 1.04796 1.05179 1.23302 0.95636 0.83804 1.04323 1.21923 0.92332 1.00643 1.09706 1.21962 0.99654 0.93558 1.06365 1.23131 0.83617 0.95763 1.09384 1.20568 0.91579 0.83855 0.89550 0.82910 1.86533 1.55284 1.38812 1.55274 1.21884 0.89013 0.94222 0.97431 1.45540 1.32980 1.49886 1.08990 1.18558 0.83675 0.80043 0.82995 1.90741 1.61366 1.61074 1.32790 1.19755 1.01621 1.10772 0.94825 1.21245 0.93953 0.94990 0.95506 1.20959 1.01125 1.04391 0.98384 1.21262 0.97931 0.96645 0.92115 1.21250 0.99245 1.07480 0.98591 1.17825 0.90678 0.90128 0.91832 1.19952 1.29953 0.99856 0.98229 0.91037 1.27120 0.91932 1.05696 0.93106 1.69627 1.35663 1.37795 1.04552 0.85484 0.79219 0.75979 0.80359 1.17192 1.17255 1.20719 1.83907 1.16417 1.36306 1.71906 0.90352 0.87621 0.88235 0.81193 0.81478 0.75882 0.91479 0.93158 0.75009 0.84185 0.83725 0.84531 0.88043 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.42 71.24 0.74 -0.12 16 2 C -0.02 -0.42 7.32 24.83 0.18 -0.23 16 3 C -0.23 -4.39 10.81 22.19 0.24 -4.15 16 4 C -0.20 -4.12 10.81 22.19 0.24 -3.88 16 5 C -0.07 -1.59 6.20 24.83 0.15 -1.44 16 6 C 0.20 4.44 3.51 29.84 0.10 4.54 16 7 H 0.15 2.63 8.14 -2.39 -0.02 2.62 16 8 O -0.55 -12.06 13.06 -144.39 -1.89 -13.94 16 9 C 0.10 2.93 5.32 86.38 0.46 3.39 16 10 N -0.72 -23.95 5.40 -466.36 -2.52 -26.47 16 11 C 0.55 25.76 7.72 86.67 0.67 26.43 16 12 O -0.58 -33.08 13.54 -4.08 -0.06 -33.13 16 13 C -0.26 -12.30 5.92 -19.70 -0.12 -12.42 16 14 C -0.04 -1.37 9.52 22.50 0.21 -1.16 16 15 C -0.23 -7.65 10.03 22.41 0.22 -7.42 16 16 C -0.06 -2.27 10.01 22.26 0.22 -2.05 16 17 C -0.25 -11.36 7.00 22.72 0.16 -11.20 16 18 C 0.10 5.24 5.03 -21.11 -0.11 5.14 16 19 C -0.45 -27.36 8.31 23.41 0.19 -27.17 16 20 H 0.07 4.96 5.96 -2.91 -0.02 4.94 16 21 C 0.04 2.01 5.47 85.37 0.47 2.48 16 22 N -0.85 -50.06 13.92 21.88 0.30 -49.76 16 23 Si 0.97 44.08 24.52 68.60 1.68 45.76 16 24 H -0.25 -10.26 6.76 99.48 0.67 -9.59 16 25 H -0.25 -11.40 6.73 99.48 0.67 -10.73 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 27 O -0.19 -4.59 10.52 2.07 0.02 -4.56 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.39 7.40 8.93 -74.05 -0.66 6.73 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.41 11.02 6.40 -92.71 -0.59 10.42 16 37 H 0.14 3.74 6.42 -2.91 -0.02 3.72 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.10 4.66 5.01 -2.91 -0.01 4.64 16 41 H 0.29 15.40 8.29 -92.71 -0.77 14.63 16 Total: -1.00 -77.86 347.05 1.37 -76.49 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -0.24 Total: 34.87 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.05 Total: -29.25 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.21 Total: -76.23 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -1.92 Total: -51.64 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.68 Total: 45.76 kcal Total: -77.86 1.37 -76.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866654050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.992 kcal (2) G-P(sol) polarization free energy of solvation -77.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds