Wall clock time and date at job start Tue Mar 31 2020 10:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47207 * 274.23480 * 3 2 1 5 5 H 1.48498 * 109.47238 * 34.23047 * 3 2 1 6 6 H 1.48499 * 109.47357 * 154.23020 * 3 2 1 7 7 C 1.37875 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 7.98790 * 7 2 1 9 9 C 1.50702 * 120.00403 * 187.97898 * 7 2 1 10 10 O 1.42904 * 110.63652 * 56.31556 * 9 7 2 11 11 C 1.55153 * 110.87192 * 293.07007 * 9 7 2 12 12 C 1.55122 * 101.48778 * 205.89540 * 11 9 7 13 13 N 1.47431 * 104.72364 * 37.29424 * 12 11 9 14 14 C 1.34768 * 125.64999 * 155.81866 * 13 12 11 15 15 O 1.21674 * 119.99794 * 179.69114 * 14 13 12 16 16 C 1.46661 * 120.00325 * 359.69368 * 14 13 12 17 17 C 1.34726 * 119.99860 * 187.01813 * 16 14 13 18 18 C 1.47249 * 120.00484 * 10.92054 * 17 16 14 19 19 C 1.39926 * 119.99782 * 226.06783 * 18 17 16 20 20 C 1.37104 * 120.00191 * 179.71811 * 19 18 17 21 21 C 1.39953 * 119.99481 * 0.57150 * 20 19 18 22 22 C 1.47179 * 119.99972 * 179.72120 * 21 20 19 23 23 O 1.21257 * 120.00074 * 179.97438 * 22 21 20 24 24 C 1.39946 * 119.99499 * 359.70275 * 21 20 19 25 25 C 1.37101 * 119.99687 * 359.97438 * 24 21 20 26 26 C 1.47027 * 108.69638 * 335.55268 * 13 12 11 27 27 H 0.96995 * 120.00405 * 0.02562 * 1 2 3 28 28 H 0.96689 * 114.00154 * 61.68930 * 10 9 7 29 29 H 1.09001 * 111.00771 * 324.13698 * 11 9 7 30 30 H 1.09002 * 111.00906 * 87.94848 * 11 9 7 31 31 H 1.09003 * 110.49786 * 278.45529 * 12 11 9 32 32 H 1.09000 * 110.35149 * 156.05711 * 12 11 9 33 33 H 1.07998 * 119.99509 * 7.01997 * 16 14 13 34 34 H 1.08008 * 119.99493 * 190.63857 * 17 16 14 35 35 H 1.07995 * 119.99431 * 359.97438 * 19 18 17 36 36 H 1.07997 * 120.00391 * 180.29469 * 20 19 18 37 37 H 1.08002 * 120.00558 * 359.97438 * 22 21 20 38 38 H 1.07999 * 120.00203 * 180.02562 * 24 21 20 39 39 H 1.07999 * 120.00036 * 180.02562 * 25 24 21 40 40 H 1.08999 * 109.87669 * 120.70465 * 26 13 12 41 41 H 1.08995 * 109.88021 * 241.71394 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4071 2.0981 -1.3963 5 1 1.4941 2.6252 0.7876 6 1 3.5885 1.4161 0.6087 7 6 2.0046 -1.1940 0.0005 8 1 1.4725 -2.1249 -0.1290 9 6 3.5007 -1.2003 0.1817 10 8 3.8638 -0.5392 1.3955 11 6 4.2074 -0.5438 -1.0336 12 6 5.5974 -1.2312 -0.9910 13 7 5.3167 -2.6189 -0.5798 14 6 6.0973 -3.6872 -0.8360 15 8 5.7678 -4.7900 -0.4414 16 6 7.3441 -3.5205 -1.5901 17 6 8.0522 -4.6024 -1.9686 18 6 7.4661 -5.9472 -1.8421 19 6 8.2193 -6.9896 -1.2905 20 6 7.6716 -8.2404 -1.1674 21 6 6.3634 -8.4776 -1.6044 22 6 5.7776 -9.8218 -1.4779 23 8 4.6439 -10.0272 -1.8561 24 6 5.6123 -7.4364 -2.1613 25 6 6.1578 -6.1840 -2.2782 26 6 4.0471 -2.6433 0.1614 27 1 -0.4850 0.8400 -0.0004 28 1 3.5103 -0.9576 2.1922 29 1 3.6828 -0.7729 -1.9612 30 1 4.3012 0.5334 -0.8961 31 1 6.2427 -0.7425 -0.2610 32 1 6.0591 -1.2142 -1.9782 33 1 7.6944 -2.5305 -1.8420 34 1 9.0482 -4.4828 -2.3690 35 1 9.2305 -6.8076 -0.9580 36 1 8.2513 -9.0438 -0.7373 37 1 6.3573 -10.6254 -1.0482 38 1 4.6026 -7.6191 -2.4982 39 1 5.5781 -5.3804 -2.7076 40 1 3.3376 -3.3013 -0.3403 41 1 4.2192 -2.9914 1.1798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869076051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:37 Heat of formation + Delta-G solvation = -46.531093 kcal Electronic energy + Delta-G solvation = -25682.047439 eV Core-core repulsion = 21914.588363 eV Total energy + Delta-G solvation = -3767.459076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22665 -39.52649 -38.38458 -37.41638 -34.63942 -33.92407 -32.44624 -31.14555 -30.74309 -29.91102 -28.45087 -26.02567 -24.73443 -23.08664 -22.73120 -21.74828 -20.75557 -19.72250 -18.58901 -17.71202 -17.46111 -16.89445 -16.08943 -15.61048 -15.31107 -15.09384 -14.81374 -14.50535 -14.40917 -14.33639 -13.84841 -13.65558 -13.58718 -13.36359 -13.09438 -12.88792 -12.47283 -12.42213 -12.21327 -11.79255 -11.56868 -11.36058 -11.20137 -11.16850 -10.68550 -10.35803 -10.14421 -10.01619 -9.89713 -9.61749 -9.06579 -8.98425 -8.78528 -8.51937 -8.26492 -8.15132 -6.25648 -4.37198 0.29069 1.33798 1.46158 2.46379 3.25914 3.35786 3.38619 3.45661 3.55422 3.82620 4.12539 4.38404 4.52315 4.63673 4.72150 4.86817 5.02896 5.10616 5.14272 5.22177 5.28618 5.32807 5.48805 5.56147 5.67313 5.75396 5.80036 5.86809 5.97181 6.02865 6.04002 6.23520 6.37831 6.41383 6.48851 6.54034 6.61320 6.64238 6.85571 7.08463 7.30628 7.43004 7.88150 8.14245 8.44337 8.68676 8.84779 9.37503 10.84680 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.003243 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.298710 B = 8632.714056 C = 9576.306392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.089 3.911 3 Si 0.872 3.128 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.221 1.221 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.218 3.782 10 O -0.572 6.572 11 C -0.128 4.128 12 C 0.099 3.901 13 N -0.602 5.602 14 C 0.542 3.458 15 O -0.537 6.537 16 C -0.185 4.185 17 C -0.050 4.050 18 C -0.022 4.022 19 C -0.122 4.122 20 C -0.079 4.079 21 C -0.191 4.191 22 C 0.382 3.618 23 O -0.464 6.464 24 C -0.066 4.066 25 C -0.058 4.058 26 C 0.096 3.904 27 H 0.267 0.733 28 H 0.365 0.635 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.725 -9.839 -4.260 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.144 1.144 7 C -0.591 4.591 8 H 0.096 0.904 9 C 0.178 3.822 10 O -0.378 6.378 11 C -0.166 4.166 12 C -0.024 4.024 13 N -0.334 5.334 14 C 0.332 3.668 15 O -0.417 6.417 16 C -0.205 4.205 17 C -0.070 4.070 18 C -0.022 4.022 19 C -0.140 4.140 20 C -0.097 4.097 21 C -0.192 4.192 22 C 0.241 3.759 23 O -0.337 6.337 24 C -0.084 4.084 25 C -0.076 4.076 26 C -0.026 4.026 27 H 0.077 0.923 28 H 0.212 0.788 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.106 -10.090 -4.669 22.105 hybrid contribution 0.062 0.880 0.452 0.991 sum 19.168 -9.211 -4.217 21.680 Atomic orbital electron populations 1.69952 1.06741 1.27645 1.47712 1.24947 0.94554 0.99752 0.92383 0.87093 0.82891 0.82222 0.77824 1.21386 1.22409 1.14445 1.21201 0.88989 0.95399 1.53495 0.90400 1.19940 0.93955 0.85549 0.82784 1.86514 1.78020 1.57013 1.16285 1.23214 0.93278 1.00032 1.00031 1.22475 0.99084 0.81797 0.99065 1.48568 1.22983 1.07518 1.54286 1.18140 0.83824 0.83515 0.81293 1.90872 1.73349 1.23808 1.53650 1.23218 0.96316 0.99684 1.01329 1.22364 0.98134 0.91036 0.95420 1.19141 0.93818 0.92778 0.96490 1.20963 0.99874 0.92389 1.00767 1.21005 0.93945 0.97116 0.97637 1.20894 0.96162 0.96824 1.05363 1.24075 0.87470 0.90002 0.74378 1.90526 1.20205 1.85071 1.37893 1.21098 0.99486 0.91979 0.95840 1.20955 0.93138 0.96206 0.97307 1.22815 0.83495 1.00806 0.95510 0.92339 0.78785 0.89411 0.90369 0.91373 0.91449 0.84789 0.84313 0.85651 0.85395 0.88250 0.85309 0.86245 0.90782 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.96 55.43 0.77 -25.18 16 2 C 0.09 2.43 5.46 -17.82 -0.10 2.33 16 3 Si 0.87 20.49 24.52 -169.99 -4.17 16.32 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.22 -4.97 4.81 56.52 0.27 -4.69 16 7 C -0.55 -14.50 8.82 -34.44 -0.30 -14.81 16 8 H 0.08 2.25 7.77 -52.49 -0.41 1.84 16 9 C 0.22 4.70 0.67 -89.94 -0.06 4.64 16 10 O -0.57 -12.00 10.17 -35.23 -0.36 -12.36 16 11 C -0.13 -2.44 5.00 -24.47 -0.12 -2.56 16 12 C 0.10 1.52 6.49 -2.41 -0.02 1.51 16 13 N -0.60 -10.45 3.32 -171.93 -0.57 -11.02 16 14 C 0.54 8.90 6.90 -12.86 -0.09 8.81 16 15 O -0.54 -10.25 12.67 5.21 0.07 -10.18 16 16 C -0.18 -2.19 9.31 -37.43 -0.35 -2.54 16 17 C -0.05 -0.51 9.78 -37.17 -0.36 -0.87 16 18 C -0.02 -0.27 4.43 -104.97 -0.47 -0.73 16 19 C -0.12 -1.26 9.75 -39.36 -0.38 -1.64 16 20 C -0.08 -0.77 9.75 -39.35 -0.38 -1.15 16 21 C -0.19 -2.27 5.87 -104.99 -0.62 -2.89 16 22 C 0.38 4.09 11.45 34.36 0.39 4.48 16 23 O -0.46 -6.89 17.15 5.58 0.10 -6.79 16 24 C -0.07 -0.92 9.56 -39.35 -0.38 -1.30 16 25 C -0.06 -0.81 6.65 -39.36 -0.26 -1.08 16 26 C 0.10 1.93 6.21 -3.07 -0.02 1.91 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.36 6.78 9.08 45.56 0.41 7.20 16 29 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 30 H 0.08 1.51 4.96 -51.93 -0.26 1.25 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.83 7.24 -51.93 -0.38 0.45 16 33 H 0.13 1.24 6.97 -52.49 -0.37 0.87 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.10 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.13 1.86 7.63 -52.49 -0.40 1.46 16 39 H 0.12 1.75 7.26 -52.49 -0.38 1.37 16 40 H 0.07 1.61 7.63 -51.93 -0.40 1.21 16 41 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -33.86 340.25 -6.93 -40.80 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.39 Total: 9.16 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.51 Total: -5.88 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.20 Total: -36.20 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.20 Total: -29.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.17 Total: 16.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.86 -6.93 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869076051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.732 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds