Wall clock time and date at job start Tue Mar 31 2020 11:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46940 * 299.99884 * 3 2 1 6 6 H 1.48497 * 109.47336 * 59.99747 * 3 2 1 7 7 C 1.37872 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47211 * 180.02562 * 9 7 2 11 11 C 1.38280 * 119.93212 * 89.99831 * 10 9 7 12 12 C 1.38113 * 120.07486 * 179.74531 * 11 10 9 13 13 C 1.38872 * 119.92388 * 0.25621 * 12 11 10 14 14 N 1.39926 * 120.07044 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00109 * 144.91009 * 14 13 12 16 16 O 1.21287 * 120.00022 * 4.65604 * 15 14 13 17 17 C 1.50701 * 119.99987 * 184.65235 * 15 14 13 18 18 C 1.50696 * 110.91224 * 59.30334 * 17 15 14 19 19 O 1.20830 * 119.99840 * 120.70246 * 18 17 15 20 20 O 1.34227 * 120.00502 * 300.69785 * 18 17 15 21 21 C 1.54636 * 111.03733 * 295.33529 * 17 15 14 22 22 C 1.51206 * 104.67363 * 266.59039 * 21 17 15 23 23 C 1.30530 * 111.11665 * 343.55685 * 22 21 17 24 24 C 1.51106 * 111.10213 * 0.02562 * 23 22 21 25 25 C 1.38872 * 119.86512 * 359.97438 * 13 12 11 26 26 C 1.38118 * 119.92282 * 0.02562 * 25 13 12 27 27 H 0.97006 * 120.00298 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46789 * 59.99707 * 9 7 2 29 29 H 1.08998 * 109.47064 * 300.00342 * 9 7 2 30 30 H 1.07999 * 119.96095 * 0.02562 * 11 10 9 31 31 H 1.07996 * 120.03958 * 180.23296 * 12 11 10 32 32 H 0.96998 * 120.00122 * 324.91907 * 14 13 12 33 33 H 0.96691 * 117.00853 * 179.97438 * 20 18 17 34 34 H 1.08994 * 110.38489 * 25.41548 * 21 17 15 35 35 H 1.09000 * 110.38574 * 147.79006 * 21 17 15 36 36 H 1.08002 * 124.43675 * 163.58158 * 22 21 17 37 37 H 1.07995 * 124.45190 * 180.02562 * 23 22 21 38 38 H 1.08997 * 110.38602 * 257.62508 * 24 23 22 39 39 H 1.08994 * 110.38401 * 135.24586 * 24 23 22 40 40 H 1.07993 * 120.04244 * 180.02562 * 25 13 12 41 41 H 1.08004 * 119.96063 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0018 11 6 2.6778 -4.1684 1.2007 12 6 3.5712 -5.2216 1.2054 13 6 4.0243 -5.7510 0.0041 14 7 4.9299 -6.8176 0.0052 15 6 4.8568 -7.7648 -0.9509 16 8 4.0619 -7.6490 -1.8597 17 6 5.7626 -8.9677 -0.8908 18 6 5.5498 -9.7380 0.3868 19 8 5.2050 -10.8953 0.3442 20 8 5.7434 -9.1387 1.5721 21 6 7.2444 -8.5552 -1.0501 22 6 7.5234 -8.6930 -2.5298 23 6 6.6061 -9.4131 -3.1162 24 6 5.5621 -9.8753 -2.1265 25 6 3.5768 -5.2195 -1.1983 26 6 2.6832 -4.1663 -1.1960 27 1 -0.4851 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8902 30 1 2.3247 -3.7565 2.1346 31 1 3.9175 -5.6328 2.1421 32 1 5.6103 -6.8755 0.6941 33 1 5.5941 -9.6731 2.3640 34 1 7.3876 -7.5230 -0.7306 35 1 7.8881 -9.2235 -0.4782 36 1 8.3708 -8.2536 -3.0351 37 1 6.5948 -9.6477 -4.1703 38 1 5.7267 -10.9195 -1.8608 39 1 4.5621 -9.7405 -2.5388 40 1 3.9269 -5.6293 -2.1342 41 1 2.3345 -3.7528 -2.1308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902838970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:56 Heat of formation + Delta-G solvation = -82.858082 kcal Electronic energy + Delta-G solvation = -25505.640824 eV Core-core repulsion = 21736.606491 eV Total energy + Delta-G solvation = -3769.034332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76693 -40.05605 -38.74105 -37.54940 -36.59844 -35.00112 -33.07392 -31.27628 -30.34448 -30.02168 -28.68330 -26.66742 -24.29253 -23.67700 -22.46164 -22.19056 -20.44769 -19.84716 -19.34206 -18.73362 -17.93774 -17.41784 -16.77985 -16.31296 -15.93764 -15.53883 -15.13873 -14.92081 -14.38852 -14.26603 -13.97387 -13.46275 -13.30719 -13.02066 -12.88007 -12.67765 -12.59982 -12.59031 -12.09382 -12.02417 -11.86968 -11.67844 -11.43162 -11.30471 -11.07723 -10.86209 -10.60534 -10.40929 -10.11148 -9.88314 -9.45670 -9.31695 -9.27506 -8.43158 -8.31469 -7.44471 -6.04099 -4.08214 1.48930 1.75763 1.87676 2.03412 2.24095 2.74805 2.90981 3.29116 3.36812 3.41601 3.66467 4.01057 4.33102 4.40108 4.55218 4.69032 4.77557 4.92961 5.10651 5.16266 5.29994 5.40146 5.43523 5.51998 5.56228 5.63608 5.88475 5.95438 6.02192 6.08065 6.12676 6.17519 6.44071 6.62472 6.73370 6.84357 7.14164 7.18488 7.32256 7.39320 7.50710 7.67326 7.85302 7.91706 8.00149 8.31847 8.97392 9.55673 11.05546 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.002754 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.591615 B =10164.070156 C =10523.031102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.039 4.039 11 C -0.109 4.109 12 C -0.138 4.138 13 C 0.098 3.902 14 N -0.655 5.655 15 C 0.529 3.471 16 O -0.500 6.500 17 C -0.082 4.082 18 C 0.501 3.499 19 O -0.496 6.496 20 O -0.510 6.510 21 C -0.078 4.078 22 C -0.177 4.177 23 C -0.144 4.144 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.110 4.110 27 H 0.261 0.739 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.411 0.589 33 H 0.418 0.582 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 -20.090 0.618 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.039 4.039 11 C -0.128 4.128 12 C -0.158 4.158 13 C 0.006 3.994 14 N -0.300 5.300 15 C 0.313 3.687 16 O -0.374 6.374 17 C -0.087 4.087 18 C 0.341 3.659 19 O -0.383 6.383 20 O -0.323 6.323 21 C -0.116 4.116 22 C -0.194 4.194 23 C -0.162 4.162 24 C -0.117 4.117 25 C -0.136 4.136 26 C -0.128 4.128 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.247 0.753 33 H 0.278 0.722 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.298 -20.027 -0.384 25.204 hybrid contribution 0.711 0.584 0.958 1.328 sum 16.009 -19.442 0.574 25.192 Atomic orbital electron populations 1.69968 1.06038 1.26705 1.50581 1.25019 0.94879 0.99270 0.95220 0.86484 0.80129 0.83510 0.77615 1.19669 1.20952 1.20964 1.21102 0.93086 0.89836 1.50858 0.92382 1.18367 0.92585 0.89608 0.98447 1.20743 0.96160 0.95157 0.91873 1.20893 0.97486 0.95832 0.98586 1.20760 1.00068 0.99455 0.95564 1.17523 0.96404 0.90914 0.94546 1.43261 1.33661 1.23009 1.30071 1.19578 0.83414 0.82938 0.82743 1.90741 1.36634 1.76845 1.33172 1.21593 0.99066 0.95592 0.92403 1.22473 0.73084 0.85545 0.84768 1.90746 1.42109 1.17914 1.87518 1.84445 1.82006 1.48988 1.16874 1.21380 0.90221 1.03257 0.96700 1.23146 1.00670 1.01160 0.94465 1.23249 0.95350 0.98067 0.99510 1.21360 1.01612 0.98701 0.89985 1.21127 0.99242 0.96313 0.96895 1.21025 0.97574 0.95643 0.98581 0.92894 0.95254 0.95286 0.85927 0.86679 0.75284 0.72171 0.89230 0.88958 0.84627 0.84603 0.88042 0.88002 0.85369 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.21 9.09 -34.44 -0.31 -14.52 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.05 1.20 5.10 -29.04 -0.15 1.05 16 10 C -0.04 -0.84 5.07 -104.59 -0.53 -1.37 16 11 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 12 C -0.14 -2.22 9.97 -39.39 -0.39 -2.61 16 13 C 0.10 1.59 6.30 -83.69 -0.53 1.06 16 14 N -0.65 -8.19 4.90 -9.86 -0.05 -8.24 16 15 C 0.53 6.93 6.35 -10.98 -0.07 6.86 16 16 O -0.50 -8.31 12.95 5.55 0.07 -8.24 16 17 C -0.08 -0.81 0.76 -155.10 -0.12 -0.93 16 18 C 0.50 4.74 6.91 36.00 0.25 4.99 16 19 O -0.50 -5.93 16.30 -18.75 -0.31 -6.24 16 20 O -0.51 -3.19 12.09 -39.25 -0.47 -3.66 16 21 C -0.08 -0.58 5.92 -26.78 -0.16 -0.74 16 22 C -0.18 -1.35 10.78 -35.65 -0.38 -1.74 16 23 C -0.14 -1.21 10.78 -35.70 -0.38 -1.60 16 24 C -0.08 -0.79 5.52 -26.83 -0.15 -0.94 16 25 C -0.12 -2.12 8.70 -39.39 -0.34 -2.46 16 26 C -0.11 -2.22 9.69 -39.61 -0.38 -2.60 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.03 0.77 8.08 -51.93 -0.42 0.36 16 30 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.41 3.90 7.63 -40.82 -0.31 3.59 16 33 H 0.42 0.90 9.10 45.56 0.41 1.32 16 34 H 0.09 0.61 7.66 -51.93 -0.40 0.22 16 35 H 0.09 0.54 7.88 -51.93 -0.41 0.13 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.10 0.96 7.01 -51.93 -0.36 0.60 16 39 H 0.10 1.18 6.97 -51.93 -0.36 0.82 16 40 H 0.13 2.31 6.22 -52.49 -0.33 1.99 16 41 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -34.06 351.46 -8.13 -42.19 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.25 Total: 4.61 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.13 Total: -16.48 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.69 Total: -33.86 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.71 Total: -18.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.06 -8.13 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902838970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.670 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds