Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48502 * 109.47180 * 239.99920 * 3 2 1 5 5 H 1.48502 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46969 * 119.99952 * 3 2 1 7 7 C 1.37880 * 119.99330 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85369 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.69594 * 231.42222 * 8 7 2 10 10 C 1.52955 * 109.40144 * 305.27439 * 9 8 7 11 11 H 1.08998 * 109.41949 * 303.49572 * 10 9 8 12 12 N 1.46507 * 109.41104 * 183.63220 * 10 9 8 13 13 C 1.34778 * 119.99658 * 155.00172 * 12 10 9 14 14 O 1.21651 * 120.00213 * 359.97438 * 13 12 10 15 15 C 1.46973 * 119.99649 * 180.02562 * 13 12 10 16 16 C 1.35813 * 125.12781 * 179.71702 * 15 13 12 17 17 C 1.46263 * 106.08090 * 179.86344 * 16 15 13 18 18 C 1.39728 * 134.09908 * 180.10543 * 17 16 15 19 19 C 1.38037 * 119.55300 * 180.32512 * 18 17 16 20 20 O 1.35974 * 119.90848 * 179.97438 * 19 18 17 21 21 C 1.39288 * 120.18209 * 359.97438 * 19 18 17 22 22 C 1.37715 * 120.70044 * 0.02562 * 21 19 18 23 23 C 1.39017 * 120.06829 * 359.95341 * 22 21 19 24 24 O 1.34825 * 133.08729 * 180.02562 * 23 22 21 25 25 C 1.52965 * 109.81734 * 63.60162 * 10 9 8 26 26 C 1.51663 * 121.09677 * 180.16000 * 7 2 1 27 27 H 0.97006 * 119.99639 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.62649 * 111.60989 * 8 7 2 29 29 H 1.09001 * 109.62544 * 351.23335 * 8 7 2 30 30 H 1.08998 * 109.48072 * 65.25266 * 9 8 7 31 31 H 1.08999 * 109.48148 * 185.28557 * 9 8 7 32 32 H 0.96995 * 120.00146 * 335.00368 * 12 10 9 33 33 H 1.07993 * 126.96567 * 359.97222 * 16 15 13 34 34 H 1.08004 * 120.22138 * 0.30002 * 18 17 16 35 35 H 0.96703 * 114.00587 * 89.99794 * 20 19 18 36 36 H 1.08007 * 119.65119 * 180.02562 * 21 19 18 37 37 H 1.07994 * 119.96673 * 180.02562 * 22 21 19 38 38 H 1.08997 * 109.48290 * 56.37766 * 25 10 9 39 39 H 1.09003 * 109.47963 * 176.41794 * 25 10 9 40 40 H 1.09001 * 109.55834 * 8.85985 * 26 7 2 41 41 H 1.08999 * 109.74924 * 248.45144 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 -0.0005 8 6 1.2675 -2.5152 -0.0005 9 6 1.8191 -3.3853 1.1338 10 6 3.3359 -3.5142 0.9837 11 1 3.5695 -3.9192 -0.0009 12 7 3.8524 -4.4159 2.0164 13 6 5.0082 -5.0793 1.8149 14 8 5.6222 -4.9298 0.7754 15 6 5.5261 -5.9844 2.8507 16 6 6.6726 -6.7062 2.7555 17 6 6.7872 -7.4516 4.0088 18 6 7.7232 -8.3534 4.5217 19 6 7.5274 -8.8991 5.7744 20 8 8.4334 -9.7778 6.2803 21 6 6.4042 -8.5522 6.5216 22 6 5.4760 -7.6644 6.0248 23 6 5.6539 -7.1025 4.7657 24 8 4.9321 -6.2269 4.0376 25 6 3.9907 -2.1403 1.1367 26 6 3.5208 -1.2234 0.0031 27 1 -0.4850 0.8401 0.0004 28 1 1.4190 -3.0189 -0.9552 29 1 0.2031 -2.3406 0.1564 30 1 1.5867 -2.9225 2.0929 31 1 1.3637 -4.3745 1.0875 32 1 3.3627 -4.5355 2.8451 33 1 7.3612 -6.7247 1.9239 34 1 8.5939 -8.6219 3.9417 35 1 9.1433 -9.3620 6.7885 36 1 6.2597 -8.9841 7.5009 37 1 4.6097 -7.4034 6.6145 38 1 3.7069 -1.7070 2.0957 39 1 5.0746 -2.2472 1.0924 40 1 3.9048 -0.2160 0.1641 41 1 3.8841 -1.6054 -0.9509 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155672183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = -63.990520 kcal Electronic energy + Delta-G solvation = -25107.468693 eV Core-core repulsion = 21339.252519 eV Total energy + Delta-G solvation = -3768.216173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.75336 -39.69438 -39.19350 -36.86127 -36.33423 -33.87109 -33.09303 -31.71721 -30.08615 -29.76873 -29.55976 -27.36980 -24.54334 -22.97365 -22.38352 -21.72256 -21.49763 -20.47208 -19.65388 -18.90984 -18.06476 -17.65585 -16.61436 -16.10655 -15.95809 -15.66187 -15.45893 -14.58557 -14.55810 -14.39139 -14.24710 -13.54982 -13.49364 -13.22438 -13.20148 -12.81957 -12.32224 -12.21839 -12.11765 -12.09479 -11.69386 -11.08783 -10.93807 -10.86279 -10.76370 -10.54520 -10.36831 -10.12095 -10.03454 -9.77927 -9.09705 -8.97699 -8.81357 -8.62557 -8.51292 -8.41029 -6.13865 -4.05124 0.25828 0.81354 1.60146 2.22997 3.09771 3.18327 3.23613 3.28512 3.34398 3.36272 3.74408 4.19690 4.31734 4.36281 4.63121 4.77467 4.86464 4.95789 5.14141 5.20926 5.43688 5.58340 5.65877 5.74403 5.78885 5.90944 5.97329 6.02540 6.10817 6.31389 6.41434 6.61948 6.62148 6.66757 6.81966 6.90028 7.01008 7.13073 7.21066 7.37519 7.58634 7.61830 7.67183 7.80655 8.20857 8.33517 8.91336 9.50945 10.95632 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.002458 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.066053 B =11388.482053 C =11561.456089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.491 4.491 8 C 0.013 3.987 9 C -0.115 4.115 10 C 0.152 3.848 11 H 0.083 0.917 12 N -0.706 5.706 13 C 0.590 3.410 14 O -0.515 6.515 15 C -0.007 4.007 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.089 4.089 19 C 0.085 3.915 20 O -0.495 6.495 21 C -0.111 4.111 22 C -0.091 4.091 23 C 0.060 3.940 24 O -0.181 6.181 25 C -0.115 4.115 26 C -0.009 4.009 27 H 0.265 0.735 28 H 0.007 0.993 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.401 0.599 33 H 0.172 0.828 34 H 0.137 0.863 35 H 0.390 0.610 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.026 0.974 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.981 -15.769 13.796 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.510 4.510 8 C -0.025 4.025 9 C -0.153 4.153 10 C 0.050 3.950 11 H 0.101 0.899 12 N -0.354 5.354 13 C 0.374 3.626 14 O -0.393 6.393 15 C -0.058 4.058 16 C -0.146 4.146 17 C -0.126 4.126 18 C -0.107 4.107 19 C 0.040 3.960 20 O -0.305 6.305 21 C -0.129 4.129 22 C -0.109 4.109 23 C 0.012 3.988 24 O -0.083 6.083 25 C -0.154 4.154 26 C -0.047 4.047 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.236 0.764 33 H 0.189 0.811 34 H 0.155 0.845 35 H 0.246 0.754 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 12.599 -15.808 12.837 23.947 hybrid contribution 0.670 1.126 0.749 1.509 sum 13.269 -14.682 13.587 24.005 Atomic orbital electron populations 1.69817 1.06119 1.27131 1.49618 1.24810 0.94731 0.98564 0.94442 0.86650 0.79405 0.82932 0.79066 1.19934 1.21841 1.19998 1.20086 0.89203 0.91476 1.50207 1.19342 0.98817 0.92721 0.91604 1.21954 0.91872 0.98891 1.02620 1.21227 0.94936 0.88827 0.90030 0.89859 1.46428 1.22599 1.44414 1.21963 1.16711 0.81974 0.79426 0.84482 1.90891 1.58436 1.64707 1.25279 1.22378 0.95354 1.02069 0.85956 1.22708 0.97614 0.96745 0.97532 1.19741 0.96751 1.00958 0.95132 1.20815 0.99139 0.95015 0.95750 1.18134 0.91755 0.93385 0.92718 1.84881 1.39672 1.33389 1.72535 1.21212 0.94079 0.97069 1.00563 1.19836 1.01246 0.98026 0.91827 1.19757 0.91507 0.93326 0.94222 1.84075 1.45986 1.52801 1.25428 1.21918 0.97360 0.94982 1.01109 1.19655 0.96625 0.94562 0.93874 0.92466 0.97442 0.91950 0.92509 0.94362 0.76443 0.81082 0.84484 0.75422 0.83947 0.84127 0.92789 0.94269 0.95520 0.95980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 12.73 55.43 0.71 -24.40 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.13 26.83 -169.99 -4.56 16.57 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.49 -12.68 5.54 -98.73 -0.55 -13.23 16 8 C 0.01 0.31 5.95 -27.49 -0.16 0.15 16 9 C -0.11 -2.29 5.40 -26.63 -0.14 -2.44 16 10 C 0.15 2.91 2.35 -67.97 -0.16 2.75 16 11 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 12 N -0.71 -11.38 5.07 -55.06 -0.28 -11.66 16 13 C 0.59 9.72 7.75 -12.72 -0.10 9.63 16 14 O -0.52 -9.98 16.49 5.23 0.09 -9.89 16 15 C -0.01 -0.10 7.07 -36.91 -0.26 -0.36 16 16 C -0.13 -1.57 10.81 -37.23 -0.40 -1.97 16 17 C -0.12 -1.42 6.38 -105.19 -0.67 -2.09 16 18 C -0.09 -0.83 10.04 -39.10 -0.39 -1.22 16 19 C 0.08 0.71 6.70 -39.26 -0.26 0.44 16 20 O -0.49 -3.42 13.50 -19.66 -0.27 -3.68 16 21 C -0.11 -0.84 9.95 -39.38 -0.39 -1.23 16 22 C -0.09 -0.80 10.05 -39.48 -0.40 -1.19 16 23 C 0.06 0.70 7.40 -38.37 -0.28 0.41 16 24 O -0.18 -2.36 10.28 2.52 0.03 -2.34 16 25 C -0.11 -2.37 5.50 -26.65 -0.15 -2.52 16 26 C -0.01 -0.21 5.60 -27.31 -0.15 -0.36 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 5.57 8.31 -40.82 -0.34 5.23 16 33 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.39 0.79 9.06 45.56 0.41 1.20 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.61 5.21 -51.93 -0.27 0.34 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.04 344.80 -7.98 -39.02 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.32 Total: 2.43 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.57 Total: -11.24 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.43 Total: -36.07 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.15 Total: -15.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.56 Total: 16.57 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -7.98 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155672183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.967 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds