Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48502 * 109.47180 * 239.99920 * 3 2 1 5 5 H 1.48502 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46969 * 119.99952 * 3 2 1 7 7 C 1.37880 * 119.99330 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85369 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.69594 * 231.42222 * 8 7 2 10 10 C 1.52955 * 109.40144 * 305.27439 * 9 8 7 11 11 H 1.08998 * 109.41949 * 303.49572 * 10 9 8 12 12 N 1.46507 * 109.41104 * 183.63220 * 10 9 8 13 13 C 1.34778 * 119.99658 * 155.00172 * 12 10 9 14 14 O 1.21651 * 120.00213 * 359.97438 * 13 12 10 15 15 C 1.46973 * 119.99649 * 180.02562 * 13 12 10 16 16 C 1.35813 * 125.12781 * 179.71702 * 15 13 12 17 17 C 1.46263 * 106.08090 * 179.86344 * 16 15 13 18 18 C 1.39728 * 134.09908 * 180.10543 * 17 16 15 19 19 C 1.38037 * 119.55300 * 180.32512 * 18 17 16 20 20 O 1.35974 * 119.90848 * 179.97438 * 19 18 17 21 21 C 1.39288 * 120.18209 * 359.97438 * 19 18 17 22 22 C 1.37715 * 120.70044 * 0.02562 * 21 19 18 23 23 C 1.39017 * 120.06829 * 359.95341 * 22 21 19 24 24 O 1.34825 * 133.08729 * 180.02562 * 23 22 21 25 25 C 1.52965 * 109.81734 * 63.60162 * 10 9 8 26 26 C 1.51663 * 121.09677 * 180.16000 * 7 2 1 27 27 H 0.97006 * 119.99639 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.62649 * 111.60989 * 8 7 2 29 29 H 1.09001 * 109.62544 * 351.23335 * 8 7 2 30 30 H 1.08998 * 109.48072 * 65.25266 * 9 8 7 31 31 H 1.08999 * 109.48148 * 185.28557 * 9 8 7 32 32 H 0.96995 * 120.00146 * 335.00368 * 12 10 9 33 33 H 1.07993 * 126.96567 * 359.97222 * 16 15 13 34 34 H 1.08004 * 120.22138 * 0.30002 * 18 17 16 35 35 H 0.96703 * 114.00587 * 89.99794 * 20 19 18 36 36 H 1.08007 * 119.65119 * 180.02562 * 21 19 18 37 37 H 1.07994 * 119.96673 * 180.02562 * 22 21 19 38 38 H 1.08997 * 109.48290 * 56.37766 * 25 10 9 39 39 H 1.09003 * 109.47963 * 176.41794 * 25 10 9 40 40 H 1.09001 * 109.55834 * 8.85985 * 26 7 2 41 41 H 1.08999 * 109.74924 * 248.45144 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 -0.0005 8 6 1.2675 -2.5152 -0.0005 9 6 1.8191 -3.3853 1.1338 10 6 3.3359 -3.5142 0.9837 11 1 3.5695 -3.9192 -0.0009 12 7 3.8524 -4.4159 2.0164 13 6 5.0082 -5.0793 1.8149 14 8 5.6222 -4.9298 0.7754 15 6 5.5261 -5.9844 2.8507 16 6 6.6726 -6.7062 2.7555 17 6 6.7872 -7.4516 4.0088 18 6 7.7232 -8.3534 4.5217 19 6 7.5274 -8.8991 5.7744 20 8 8.4334 -9.7778 6.2803 21 6 6.4042 -8.5522 6.5216 22 6 5.4760 -7.6644 6.0248 23 6 5.6539 -7.1025 4.7657 24 8 4.9321 -6.2269 4.0376 25 6 3.9907 -2.1403 1.1367 26 6 3.5208 -1.2234 0.0031 27 1 -0.4850 0.8401 0.0004 28 1 1.4190 -3.0189 -0.9552 29 1 0.2031 -2.3406 0.1564 30 1 1.5867 -2.9225 2.0929 31 1 1.3637 -4.3745 1.0875 32 1 3.3627 -4.5355 2.8451 33 1 7.3612 -6.7247 1.9239 34 1 8.5939 -8.6219 3.9417 35 1 9.1433 -9.3620 6.7885 36 1 6.2597 -8.9841 7.5009 37 1 4.6097 -7.4034 6.6145 38 1 3.7069 -1.7070 2.0957 39 1 5.0746 -2.2472 1.0924 40 1 3.9048 -0.2160 0.1641 41 1 3.8841 -1.6054 -0.9509 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155672183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = -85.104684 kcal Electronic energy + Delta-G solvation = -25108.384272 eV Core-core repulsion = 21339.252519 eV Total energy + Delta-G solvation = -3769.131752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.62398 -40.95474 -39.93434 -38.50650 -36.97950 -35.50770 -33.94830 -33.51641 -31.52769 -30.92850 -30.45722 -29.00427 -25.66718 -23.94877 -23.61503 -23.33981 -22.68081 -21.65337 -21.31174 -19.75476 -19.08188 -18.45354 -17.91850 -17.54492 -17.27794 -16.44045 -16.39990 -16.34706 -15.80426 -15.49627 -15.20685 -14.98268 -14.58614 -14.46459 -14.25823 -14.15519 -13.96297 -13.94850 -13.47659 -12.91207 -12.81252 -12.76773 -12.68654 -12.58652 -12.06194 -11.89980 -11.64563 -11.55364 -11.47984 -11.38387 -10.91098 -10.73595 -10.55634 -10.10257 -9.55476 -9.36853 -8.18354 -6.12527 -0.59195 0.11764 0.69986 1.29207 1.39267 1.40964 1.48341 1.97622 2.02992 2.40038 2.45766 3.05706 3.11824 3.41219 3.50773 3.83428 3.93969 4.02785 4.13350 4.14215 4.25311 4.44209 4.45111 4.67741 4.73582 4.76379 4.90970 4.93149 5.01071 5.01965 5.03859 5.17462 5.18335 5.18633 5.27520 5.35312 5.48800 5.53230 5.62055 5.73558 5.79277 5.84047 6.32527 6.40290 6.84617 6.92213 6.93790 7.45737 8.92173 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.002458 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.066053 B =11388.482053 C =11561.456089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.501 4.501 8 C 0.009 3.991 9 C -0.102 4.102 10 C 0.164 3.836 11 H 0.067 0.933 12 N -0.699 5.699 13 C 0.595 3.405 14 O -0.551 6.551 15 C -0.033 4.033 16 C -0.113 4.113 17 C -0.143 4.143 18 C -0.096 4.096 19 C 0.092 3.908 20 O -0.501 6.501 21 C -0.098 4.098 22 C -0.094 4.094 23 C 0.041 3.959 24 O -0.189 6.189 25 C -0.108 4.108 26 C -0.012 4.012 27 H 0.264 0.736 28 H 0.000 1.000 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.414 0.586 33 H 0.179 0.821 34 H 0.151 0.849 35 H 0.413 0.587 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.830 -17.393 16.255 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.520 4.520 8 C -0.029 4.029 9 C -0.140 4.140 10 C 0.061 3.939 11 H 0.086 0.914 12 N -0.347 5.347 13 C 0.381 3.619 14 O -0.431 6.431 15 C -0.083 4.083 16 C -0.133 4.133 17 C -0.144 4.144 18 C -0.115 4.115 19 C 0.047 3.953 20 O -0.315 6.315 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.006 4.006 24 O -0.091 6.091 25 C -0.147 4.147 26 C -0.050 4.050 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.250 0.750 33 H 0.196 0.804 34 H 0.168 0.832 35 H 0.273 0.727 36 H 0.191 0.809 37 H 0.180 0.820 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.475 -17.446 15.337 27.369 hybrid contribution 0.200 1.428 0.090 1.445 sum 14.674 -16.017 15.427 26.644 Atomic orbital electron populations 1.69938 1.07427 1.27596 1.51666 1.25512 0.95347 1.01507 0.94804 0.85852 0.78415 0.79686 0.79396 1.19545 1.21879 1.19010 1.20642 0.90720 0.92017 1.48614 1.19303 0.97417 0.93264 0.92957 1.21722 0.92432 0.99159 1.00715 1.20824 0.94194 0.88645 0.90262 0.91439 1.46130 1.22876 1.43952 1.21784 1.16881 0.81346 0.79128 0.84537 1.90863 1.59342 1.65974 1.26899 1.21782 0.96445 1.03490 0.86588 1.22953 0.96754 0.95535 0.98102 1.19840 0.97717 1.02053 0.94780 1.21022 0.99218 0.94737 0.96495 1.18243 0.92197 0.92536 0.92342 1.84830 1.40304 1.33484 1.72862 1.21594 0.92897 0.95701 1.01434 1.20199 1.02289 0.97847 0.90924 1.20237 0.91661 0.93540 0.95207 1.84014 1.46344 1.53600 1.25139 1.21800 0.97751 0.95175 0.99963 1.19670 0.95038 0.95425 0.94866 0.92674 0.98113 0.94617 0.92364 0.92124 0.74958 0.80355 0.83177 0.72703 0.80907 0.81991 0.92533 0.93643 0.95338 0.96263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.57 12.73 21.45 0.27 -53.30 16 2 C 0.03 1.48 5.46 84.66 0.46 1.94 16 3 Si 0.94 43.45 26.83 68.60 1.84 45.29 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.50 -26.13 5.54 -16.05 -0.09 -26.22 16 8 C 0.01 0.42 5.95 30.11 0.18 0.60 16 9 C -0.10 -4.02 5.40 30.66 0.17 -3.86 16 10 C 0.16 6.22 2.35 44.96 0.11 6.33 16 11 H 0.07 2.81 7.58 -2.39 -0.02 2.79 16 12 N -0.70 -22.03 5.07 -446.35 -2.26 -24.29 16 13 C 0.60 19.47 7.75 86.53 0.67 20.14 16 14 O -0.55 -21.43 16.49 -4.19 -0.07 -21.50 16 15 C -0.03 -0.92 7.07 24.00 0.17 -0.75 16 16 C -0.11 -2.75 10.81 23.79 0.26 -2.49 16 17 C -0.14 -3.05 6.38 -20.23 -0.13 -3.18 16 18 C -0.10 -1.57 10.04 22.58 0.23 -1.35 16 19 C 0.09 1.22 6.70 22.47 0.15 1.37 16 20 O -0.50 -5.05 13.50 -93.26 -1.26 -6.31 16 21 C -0.10 -1.11 9.95 22.40 0.22 -0.89 16 22 C -0.09 -1.38 10.05 22.33 0.22 -1.16 16 23 C 0.04 0.89 7.40 23.06 0.17 1.06 16 24 O -0.19 -4.75 10.28 -13.88 -0.14 -4.89 16 25 C -0.11 -4.38 5.50 30.64 0.17 -4.21 16 26 C -0.01 -0.55 5.60 30.22 0.17 -0.38 16 27 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.04 1.92 7.07 -2.39 -0.02 1.90 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.41 11.02 8.31 -92.71 -0.77 10.25 16 33 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.41 0.06 9.06 -74.05 -0.67 -0.61 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.03 1.29 5.21 -2.39 -0.01 1.27 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.58 344.80 1.16 -66.43 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -0.35 Total: 11.61 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 3.13 Total: -13.03 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.99 Total: -77.59 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.47 Total: -32.69 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.84 Total: 45.29 kcal Total: -67.58 1.16 -66.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155672183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.678 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds