Wall clock time and date at job start Tue Mar 31 2020 10:52:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86804 * 119.99899 * 2 1
4 4 H 1.48492 * 109.47140 * 270.00001 * 3 2 1
5 5 H 1.48499 * 109.47000 * 30.00443 * 3 2 1
6 6 H 1.48498 * 109.46848 * 150.00093 * 3 2 1
7 7 C 1.37878 * 119.99894 * 180.02562 * 2 1 3
8 8 C 1.51266 * 120.84899 * 359.97438 * 7 2 1
9 9 C 1.53232 * 108.53636 * 231.32860 * 8 7 2
10 10 C 1.52966 * 109.40406 * 305.37385 * 9 8 7
11 11 H 1.08993 * 109.41687 * 303.56295 * 10 9 8
12 12 N 1.46498 * 109.41211 * 183.70377 * 10 9 8
13 13 C 1.34779 * 120.00053 * 155.00083 * 12 10 9
14 14 O 1.21549 * 119.99737 * 0.02562 * 13 12 10
15 15 C 1.47855 * 120.00165 * 180.02562 * 13 12 10
16 16 C 1.39717 * 119.99891 * 359.97438 * 15 13 12
17 17 C 1.38183 * 120.07263 * 179.97438 * 16 15 13
18 18 C 1.37703 * 120.14448 * 0.02562 * 17 16 15
19 19 C 1.39885 * 120.53819 * 0.02562 * 18 17 16
20 20 C 1.39292 * 119.99839 * 180.02562 * 15 13 12
21 21 C 1.47474 * 108.02562 * 179.97438 * 19 18 17
22 22 O 1.21473 * 124.89206 * 179.97438 * 21 19 18
23 23 O 1.34330 * 110.21204 * 0.22692 * 21 19 18
24 24 C 1.45373 * 109.04593 * 359.63599 * 23 21 19
25 25 C 1.52958 * 109.81672 * 63.60009 * 10 9 8
26 26 C 1.51269 * 120.84891 * 179.97438 * 7 2 1
27 27 H 0.97001 * 120.00380 * 359.97438 * 1 2 3
28 28 H 1.09002 * 109.62495 * 111.61511 * 8 7 2
29 29 H 1.08994 * 109.63039 * 351.04101 * 8 7 2
30 30 H 1.09003 * 109.48097 * 185.40112 * 9 8 7
31 31 H 1.08994 * 109.49710 * 65.36118 * 9 8 7
32 32 H 0.97003 * 120.00129 * 335.00031 * 12 10 9
33 33 H 1.08006 * 119.96096 * 359.97438 * 16 15 13
34 34 H 1.08008 * 119.92647 * 179.97438 * 17 16 15
35 35 H 1.08005 * 120.15419 * 0.02562 * 20 15 13
36 36 H 1.08997 * 110.24029 * 241.01808 * 24 23 21
37 37 H 1.08998 * 109.93720 * 119.52837 * 24 23 21
38 38 H 1.09001 * 109.48021 * 56.37708 * 25 10 9
39 39 H 1.08994 * 109.48461 * 176.42241 * 25 10 9
40 40 H 1.08994 * 109.62476 * 248.38877 * 26 7 2
41 41 H 1.09007 * 109.62595 * 8.76620 * 26 7 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 -0.0005
8 6 1.2677 -2.5151 -0.0005
9 6 1.8236 -3.3830 1.1333
10 6 3.3406 -3.5074 0.9811
11 1 3.5740 -3.9111 -0.0040
12 7 3.8612 -4.4083 2.0124
13 6 5.0186 -5.0683 1.8088
14 8 5.6306 -4.9156 0.7699
15 6 5.5437 -5.9780 2.8494
16 6 4.8404 -6.1531 4.0439
17 6 5.3295 -7.0034 5.0172
18 6 6.5113 -7.6803 4.8137
19 6 7.2288 -7.5160 3.6242
20 6 6.7401 -6.6597 2.6392
21 6 8.4362 -8.3595 3.6994
22 8 9.2769 -8.4487 2.8271
23 8 8.4695 -9.0191 4.8691
24 6 7.2993 -8.6563 5.6517
25 6 3.9915 -2.1315 1.1324
26 6 3.5170 -1.2165 -0.0011
27 1 -0.4851 0.8400 0.0004
28 1 1.4192 -3.0189 -0.9552
29 1 0.2037 -2.3410 0.1598
30 1 1.3713 -4.3738 1.0880
31 1 1.5912 -2.9208 2.0927
32 1 3.3729 -4.5299 2.8417
33 1 3.9134 -5.6233 4.2066
34 1 4.7841 -7.1367 5.9398
35 1 7.2864 -6.5252 1.7173
36 1 7.6023 -8.1863 6.5873
37 1 6.6994 -9.5431 5.8562
38 1 3.7077 -1.6986 2.0917
39 1 5.0755 -2.2351 1.0865
40 1 3.8771 -1.5998 -0.9558
41 1 3.8982 -0.2073 0.1554
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001157191379.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:56
Heat of formation + Delta-G solvation = -92.413822 kcal
Electronic energy + Delta-G solvation = -25258.146989 eV
Core-core repulsion = 21488.698289 eV
Total energy + Delta-G solvation = -3769.448700 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.99561 -40.05298 -38.35857 -37.65024 -36.74623 -33.96780 -32.60416 -31.74779
-31.36542 -29.74061 -28.18348 -27.18600 -24.82546 -23.60839 -22.13945 -21.57751
-21.32886 -20.37011 -19.66111 -18.23894 -17.56822 -17.22769 -16.93982 -16.16223
-15.94093 -15.35330 -15.10794 -14.80690 -14.47304 -14.39498 -14.13532 -14.09715
-13.81653 -13.31853 -13.07011 -12.81000 -12.63212 -12.36446 -12.17155 -11.96001
-11.70421 -11.36376 -11.08503 -10.89025 -10.78627 -10.68338 -10.26943 -10.07615
-9.88276 -9.67579 -9.58805 -9.43336 -9.08198 -8.93508 -8.54539 -8.39698
-6.15374 -4.06478 -0.02491 0.50789 1.92804 2.57500 2.73450 3.08666
3.24853 3.33093 3.34280 3.37057 3.49386 3.57542 4.17194 4.34478
4.47456 4.55518 4.55720 4.66254 4.83027 4.95377 5.12248 5.31352
5.51670 5.56082 5.65436 5.73779 5.79978 6.04855 6.11326 6.22098
6.35288 6.40528 6.62567 6.65904 6.82063 6.88769 7.05024 7.05307
7.15664 7.38298 7.58998 7.62426 7.66629 7.79884 8.31775 8.32883
8.90747 9.49551 10.94007
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.030490 B = 0.002584 C = 0.002513
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.116810 B =10833.568840 C =11141.512056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.076 3.924
3 Si 0.887 3.113
4 H -0.278 1.278
5 H -0.290 1.290
6 H -0.264 1.264
7 C -0.489 4.489
8 C 0.013 3.987
9 C -0.114 4.114
10 C 0.153 3.847
11 H 0.081 0.919
12 N -0.715 5.715
13 C 0.550 3.450
14 O -0.531 6.531
15 C -0.130 4.130
16 C -0.047 4.047
17 C -0.104 4.104
18 C -0.086 4.086
19 C -0.203 4.203
20 C 0.022 3.978
21 C 0.524 3.476
22 O -0.446 6.446
23 O -0.319 6.319
24 C 0.091 3.909
25 C -0.113 4.113
26 C -0.019 4.019
27 H 0.264 0.736
28 H 0.007 0.993
29 H 0.061 0.939
30 H 0.036 0.964
31 H 0.055 0.945
32 H 0.393 0.607
33 H 0.144 0.856
34 H 0.143 0.857
35 H 0.151 0.849
36 H 0.121 0.879
37 H 0.121 0.879
38 H 0.051 0.949
39 H 0.037 0.963
40 H 0.019 0.981
41 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.956 -15.214 15.280 22.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.126 4.126
3 Si 0.715 3.285
4 H -0.203 1.203
5 H -0.217 1.217
6 H -0.189 1.189
7 C -0.508 4.508
8 C -0.025 4.025
9 C -0.152 4.152
10 C 0.051 3.949
11 H 0.099 0.901
12 N -0.364 5.364
13 C 0.336 3.664
14 O -0.409 6.409
15 C -0.133 4.133
16 C -0.065 4.065
17 C -0.121 4.121
18 C -0.087 4.087
19 C -0.205 4.205
20 C 0.003 3.997
21 C 0.366 3.634
22 O -0.330 6.330
23 O -0.234 6.234
24 C 0.016 3.984
25 C -0.152 4.152
26 C -0.057 4.057
27 H 0.074 0.926
28 H 0.025 0.975
29 H 0.080 0.920
30 H 0.055 0.945
31 H 0.074 0.926
32 H 0.227 0.773
33 H 0.162 0.838
34 H 0.161 0.839
35 H 0.169 0.831
36 H 0.139 0.861
37 H 0.138 0.862
38 H 0.070 0.930
39 H 0.056 0.944
40 H 0.038 0.962
41 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 8.769 -15.165 14.178 22.536
hybrid contribution 0.006 0.967 0.558 1.116
sum 8.775 -14.198 14.736 22.265
Atomic orbital electron populations
1.69827 1.06138 1.26996 1.49857 1.24841 0.94715 0.98599 0.94464
0.86678 0.79974 0.83205 0.78627 1.20344 1.21662 1.18935 1.20047
0.89384 0.91446 1.49919 1.19342 0.98741 0.92783 0.91655 1.21942
0.92094 0.98713 1.02491 1.21156 0.94630 0.88916 0.90223 0.90082
1.46370 1.23041 1.45425 1.21613 1.18054 0.81660 0.80301 0.86400
1.90808 1.58077 1.64777 1.27203 1.20183 0.96608 1.00530 0.95971
1.21659 0.98643 0.94729 0.91516 1.20210 0.94559 0.96973 1.00406
1.21025 0.95519 0.96809 0.95367 1.20739 0.98554 1.03675 0.97541
1.20981 0.92475 0.88637 0.97601 1.20421 0.84615 0.77658 0.80738
1.90922 1.42440 1.62340 1.37324 1.87249 1.44029 1.62843 1.29315
1.22472 0.83832 0.98443 0.93605 1.21887 0.97321 0.94991 1.00965
1.19787 0.96578 0.95524 0.93847 0.92557 0.97471 0.91999 0.94519
0.92648 0.77260 0.83849 0.83889 0.83132 0.86133 0.86157 0.93000
0.94411 0.96219 0.94548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.86 12.73 55.43 0.71 -24.15 16
2 C 0.08 2.03 5.46 -17.82 -0.10 1.94 16
3 Si 0.89 20.68 27.53 -169.99 -4.68 16.00 16
4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
6 H -0.26 -5.97 6.11 56.52 0.35 -5.63 16
7 C -0.49 -12.47 5.51 -98.92 -0.55 -13.01 16
8 C 0.01 0.30 5.97 -27.49 -0.16 0.14 16
9 C -0.11 -2.18 5.40 -26.63 -0.14 -2.32 16
10 C 0.15 2.83 2.35 -67.97 -0.16 2.67 16
11 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16
12 N -0.71 -10.32 5.02 -54.79 -0.28 -10.60 16
13 C 0.55 8.37 7.73 -12.32 -0.10 8.27 16
14 O -0.53 -10.29 16.00 5.32 0.09 -10.20 16
15 C -0.13 -1.49 5.87 -105.02 -0.62 -2.10 16
16 C -0.05 -0.36 9.54 -39.05 -0.37 -0.73 16
17 C -0.10 -0.59 10.01 -39.80 -0.40 -0.99 16
18 C -0.09 -0.60 6.39 -104.12 -0.66 -1.27 16
19 C -0.20 -2.12 6.26 -105.10 -0.66 -2.78 16
20 C 0.02 0.26 9.64 -38.77 -0.37 -0.11 16
21 C 0.52 6.25 8.58 34.49 0.30 6.55 16
22 O -0.45 -6.91 18.04 -18.92 -0.34 -7.25 16
23 O -0.32 -2.97 11.13 -39.15 -0.44 -3.41 16
24 C 0.09 0.42 7.93 36.08 0.29 0.71 16
25 C -0.11 -2.28 5.50 -26.65 -0.15 -2.43 16
26 C -0.02 -0.45 5.59 -27.50 -0.15 -0.60 16
27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16
29 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16
30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.39 4.29 6.62 -40.82 -0.27 4.02 16
33 H 0.14 0.77 6.38 -52.48 -0.34 0.44 16
34 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16
35 H 0.15 1.98 7.64 -52.48 -0.40 1.58 16
36 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16
37 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16
38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
41 H 0.04 0.84 4.59 -51.92 -0.24 0.60 16
LS Contribution 339.90 15.07 5.12 5.12
Total: -1.00 -32.86 339.90 -8.83 -41.69
By element:
Atomic # 1 Polarization: 3.88 SS G_CDS: -5.00 Total: -1.12 kcal
Atomic # 6 Polarization: -2.07 SS G_CDS: -4.01 Total: -6.08 kcal
Atomic # 7 Polarization: -35.18 SS G_CDS: 0.43 Total: -34.75 kcal
Atomic # 8 Polarization: -20.17 SS G_CDS: -0.69 Total: -20.86 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -4.68 Total: 16.00 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -32.86 -8.83 -41.69 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157191379.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.725 kcal
(2) G-P(sol) polarization free energy of solvation -32.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.414 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds