Wall clock time and date at job start Tue Mar 31 2020 10:52:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86804 * 119.99899 * 2 1
4 4 H 1.48492 * 109.47140 * 270.00001 * 3 2 1
5 5 H 1.48499 * 109.47000 * 30.00443 * 3 2 1
6 6 H 1.48498 * 109.46848 * 150.00093 * 3 2 1
7 7 C 1.37878 * 119.99894 * 180.02562 * 2 1 3
8 8 C 1.51266 * 120.84899 * 359.97438 * 7 2 1
9 9 C 1.53232 * 108.53636 * 231.32860 * 8 7 2
10 10 C 1.52966 * 109.40406 * 305.37385 * 9 8 7
11 11 H 1.08993 * 109.41687 * 303.56295 * 10 9 8
12 12 N 1.46498 * 109.41211 * 183.70377 * 10 9 8
13 13 C 1.34779 * 120.00053 * 155.00083 * 12 10 9
14 14 O 1.21549 * 119.99737 * 0.02562 * 13 12 10
15 15 C 1.47855 * 120.00165 * 180.02562 * 13 12 10
16 16 C 1.39717 * 119.99891 * 359.97438 * 15 13 12
17 17 C 1.38183 * 120.07263 * 179.97438 * 16 15 13
18 18 C 1.37703 * 120.14448 * 0.02562 * 17 16 15
19 19 C 1.39885 * 120.53819 * 0.02562 * 18 17 16
20 20 C 1.39292 * 119.99839 * 180.02562 * 15 13 12
21 21 C 1.47474 * 108.02562 * 179.97438 * 19 18 17
22 22 O 1.21473 * 124.89206 * 179.97438 * 21 19 18
23 23 O 1.34330 * 110.21204 * 0.22692 * 21 19 18
24 24 C 1.45373 * 109.04593 * 359.63599 * 23 21 19
25 25 C 1.52958 * 109.81672 * 63.60009 * 10 9 8
26 26 C 1.51269 * 120.84891 * 179.97438 * 7 2 1
27 27 H 0.97001 * 120.00380 * 359.97438 * 1 2 3
28 28 H 1.09002 * 109.62495 * 111.61511 * 8 7 2
29 29 H 1.08994 * 109.63039 * 351.04101 * 8 7 2
30 30 H 1.09003 * 109.48097 * 185.40112 * 9 8 7
31 31 H 1.08994 * 109.49710 * 65.36118 * 9 8 7
32 32 H 0.97003 * 120.00129 * 335.00031 * 12 10 9
33 33 H 1.08006 * 119.96096 * 359.97438 * 16 15 13
34 34 H 1.08008 * 119.92647 * 179.97438 * 17 16 15
35 35 H 1.08005 * 120.15419 * 0.02562 * 20 15 13
36 36 H 1.08997 * 110.24029 * 241.01808 * 24 23 21
37 37 H 1.08998 * 109.93720 * 119.52837 * 24 23 21
38 38 H 1.09001 * 109.48021 * 56.37708 * 25 10 9
39 39 H 1.08994 * 109.48461 * 176.42241 * 25 10 9
40 40 H 1.08994 * 109.62476 * 248.38877 * 26 7 2
41 41 H 1.09007 * 109.62595 * 8.76620 * 26 7 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 -0.0005
8 6 1.2677 -2.5151 -0.0005
9 6 1.8236 -3.3830 1.1333
10 6 3.3406 -3.5074 0.9811
11 1 3.5740 -3.9111 -0.0040
12 7 3.8612 -4.4083 2.0124
13 6 5.0186 -5.0683 1.8088
14 8 5.6306 -4.9156 0.7699
15 6 5.5437 -5.9780 2.8494
16 6 4.8404 -6.1531 4.0439
17 6 5.3295 -7.0034 5.0172
18 6 6.5113 -7.6803 4.8137
19 6 7.2288 -7.5160 3.6242
20 6 6.7401 -6.6597 2.6392
21 6 8.4362 -8.3595 3.6994
22 8 9.2769 -8.4487 2.8271
23 8 8.4695 -9.0191 4.8691
24 6 7.2993 -8.6563 5.6517
25 6 3.9915 -2.1315 1.1324
26 6 3.5170 -1.2165 -0.0011
27 1 -0.4851 0.8400 0.0004
28 1 1.4192 -3.0189 -0.9552
29 1 0.2037 -2.3410 0.1598
30 1 1.3713 -4.3738 1.0880
31 1 1.5912 -2.9208 2.0927
32 1 3.3729 -4.5299 2.8417
33 1 3.9134 -5.6233 4.2066
34 1 4.7841 -7.1367 5.9398
35 1 7.2864 -6.5252 1.7173
36 1 7.6023 -8.1863 6.5873
37 1 6.6994 -9.5431 5.8562
38 1 3.7077 -1.6986 2.0917
39 1 5.0755 -2.2351 1.0865
40 1 3.8771 -1.5998 -0.9558
41 1 3.8982 -0.2073 0.1554
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157191379.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:56
Heat of formation + Delta-G solvation = -113.742635 kcal
Electronic energy + Delta-G solvation = -25259.071876 eV
Core-core repulsion = 21488.698289 eV
Total energy + Delta-G solvation = -3770.373587 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.71317 -41.20655 -39.32997 -38.64108 -38.17021 -35.51582 -33.81417 -32.85721
-32.32379 -31.48684 -29.36107 -28.30895 -25.77690 -24.51871 -23.64132 -23.30588
-22.02469 -21.52542 -21.29531 -19.29793 -18.36940 -18.08393 -17.89868 -17.64903
-17.13231 -16.43449 -16.22474 -16.03632 -15.98728 -15.29373 -14.96518 -14.81621
-14.79472 -14.78826 -14.56610 -14.23744 -13.98167 -13.77627 -13.44775 -13.19842
-12.80872 -12.77071 -12.68619 -12.58106 -12.01728 -11.95672 -11.82805 -11.52275
-11.41540 -11.23291 -10.84387 -10.69034 -10.54542 -10.36734 -10.15705 -9.88089
-8.17357 -6.11532 -0.72129 -0.26072 1.15932 1.38547 1.42432 1.49480
1.76386 1.85794 2.11006 2.40840 2.60998 2.62965 2.97013 3.10494
3.58094 3.63114 3.89990 4.00624 4.09944 4.17276 4.22465 4.35568
4.48276 4.52995 4.70003 4.70998 4.81837 4.85765 4.94407 4.96649
5.04678 5.06983 5.12674 5.23200 5.24223 5.40679 5.54778 5.55048
5.58098 5.66355 5.76162 5.82441 6.20390 6.34973 6.54404 6.94185
7.18375 7.46870 8.92925
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.030490 B = 0.002584 C = 0.002513
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 918.116810 B =10833.568840 C =11141.512056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.028 3.972
3 Si 0.935 3.065
4 H -0.280 1.280
5 H -0.288 1.288
6 H -0.252 1.252
7 C -0.498 4.498
8 C 0.007 3.993
9 C -0.099 4.099
10 C 0.165 3.835
11 H 0.054 0.946
12 N -0.700 5.700
13 C 0.550 3.450
14 O -0.584 6.584
15 C -0.150 4.150
16 C -0.031 4.031
17 C -0.084 4.084
18 C -0.060 4.060
19 C -0.229 4.229
20 C 0.003 3.997
21 C 0.523 3.477
22 O -0.503 6.503
23 O -0.327 6.327
24 C 0.085 3.915
25 C -0.106 4.106
26 C -0.022 4.022
27 H 0.264 0.736
28 H -0.005 1.005
29 H 0.036 0.964
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.415 0.585
33 H 0.175 0.825
34 H 0.197 0.803
35 H 0.118 0.882
36 H 0.161 0.839
37 H 0.161 0.839
38 H 0.061 0.939
39 H 0.036 0.964
40 H 0.009 0.991
41 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.417 -16.477 19.744 26.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.171 4.171
3 Si 0.762 3.238
4 H -0.206 1.206
5 H -0.215 1.215
6 H -0.176 1.176
7 C -0.518 4.518
8 C -0.031 4.031
9 C -0.137 4.137
10 C 0.061 3.939
11 H 0.072 0.928
12 N -0.351 5.351
13 C 0.338 3.662
14 O -0.466 6.466
15 C -0.153 4.153
16 C -0.049 4.049
17 C -0.102 4.102
18 C -0.060 4.060
19 C -0.231 4.231
20 C -0.016 4.016
21 C 0.367 3.633
22 O -0.392 6.392
23 O -0.242 6.242
24 C 0.013 3.987
25 C -0.145 4.145
26 C -0.060 4.060
27 H 0.073 0.927
28 H 0.013 0.987
29 H 0.055 0.945
30 H 0.081 0.919
31 H 0.083 0.917
32 H 0.253 0.747
33 H 0.192 0.808
34 H 0.214 0.786
35 H 0.136 0.864
36 H 0.178 0.822
37 H 0.178 0.822
38 H 0.080 0.920
39 H 0.055 0.945
40 H 0.028 0.972
41 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 8.210 -16.449 18.712 26.232
hybrid contribution 0.145 1.254 -0.760 1.473
sum 8.355 -15.195 17.953 24.960
Atomic orbital electron populations
1.69940 1.07406 1.27505 1.51820 1.25519 0.95322 1.01468 0.94802
0.85891 0.79444 0.80011 0.78460 1.20631 1.21478 1.17606 1.20577
0.90678 0.92109 1.48404 1.19314 0.97455 0.93303 0.93053 1.21694
0.92178 0.99162 1.00686 1.20696 0.94202 0.88649 0.90369 0.92755
1.45969 1.23084 1.44493 1.21572 1.18616 0.81011 0.80062 0.86484
1.90783 1.59531 1.66532 1.29706 1.19798 0.97334 1.01301 0.96854
1.22042 0.98817 0.94278 0.89757 1.20735 0.93546 0.94556 1.01333
1.21443 0.95166 0.95864 0.93577 1.20622 0.99021 1.04316 0.99103
1.20787 0.93207 0.90289 0.97327 1.20702 0.84345 0.77395 0.80816
1.90879 1.44435 1.64388 1.39463 1.87222 1.46208 1.62297 1.28444
1.23096 0.82502 0.99770 0.93323 1.21765 0.97279 0.95423 1.00011
1.19794 0.95245 0.96311 0.94680 0.92703 0.98689 0.94492 0.91865
0.91707 0.74695 0.80807 0.78563 0.86443 0.82219 0.82203 0.92015
0.94525 0.97209 0.94565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -52.66 12.73 21.45 0.27 -52.39 16
2 C 0.03 1.48 5.46 84.65 0.46 1.94 16
3 Si 0.94 42.50 27.53 68.60 1.89 44.38 16
4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16
5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16
6 H -0.25 -10.81 6.11 99.48 0.61 -10.20 16
7 C -0.50 -25.61 5.51 -16.17 -0.09 -25.70 16
8 C 0.01 0.32 5.97 30.11 0.18 0.50 16
9 C -0.10 -3.63 5.40 30.66 0.17 -3.46 16
10 C 0.16 5.97 2.35 44.97 0.11 6.07 16
11 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16
12 N -0.70 -18.84 5.02 -445.53 -2.24 -21.08 16
13 C 0.55 16.55 7.73 86.79 0.67 17.22 16
14 O -0.58 -23.71 16.00 -3.87 -0.06 -23.78 16
15 C -0.15 -3.24 5.87 -20.12 -0.12 -3.35 16
16 C -0.03 -0.32 9.54 22.61 0.22 -0.11 16
17 C -0.08 -0.42 10.01 22.13 0.22 -0.20 16
18 C -0.06 -0.56 6.39 -19.54 -0.12 -0.68 16
19 C -0.23 -4.58 6.26 -20.17 -0.13 -4.70 16
20 C 0.00 0.08 9.64 22.80 0.22 0.30 16
21 C 0.52 12.59 8.58 70.26 0.60 13.19 16
22 O -0.50 -16.76 18.04 19.61 0.35 -16.41 16
23 O -0.33 -5.38 11.13 -52.75 -0.59 -5.97 16
24 C 0.09 0.34 7.93 71.29 0.57 0.91 16
25 C -0.11 -4.21 5.50 30.65 0.17 -4.04 16
26 C -0.02 -1.03 5.59 30.10 0.17 -0.86 16
27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16
28 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16
29 H 0.04 1.93 7.07 -2.39 -0.02 1.92 16
30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
32 H 0.41 7.42 6.62 -92.71 -0.61 6.81 16
33 H 0.17 0.77 6.38 -2.91 -0.02 0.75 16
34 H 0.20 -0.91 8.06 -2.91 -0.02 -0.93 16
35 H 0.12 3.56 7.64 -2.91 -0.02 3.54 16
36 H 0.16 -0.43 8.14 -2.39 -0.02 -0.45 16
37 H 0.16 -0.44 8.14 -2.39 -0.02 -0.46 16
38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
40 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16
41 H 0.04 1.65 4.59 -2.38 -0.01 1.64 16
Total: -1.00 -79.27 339.90 3.29 -75.98
By element:
Atomic # 1 Polarization: 1.85 SS G_CDS: 0.37 Total: 2.22 kcal
Atomic # 6 Polarization: -6.25 SS G_CDS: 3.29 Total: -2.97 kcal
Atomic # 7 Polarization: -71.50 SS G_CDS: -1.97 Total: -73.47 kcal
Atomic # 8 Polarization: -45.86 SS G_CDS: -0.30 Total: -46.16 kcal
Atomic # 14 Polarization: 42.50 SS G_CDS: 1.89 Total: 44.38 kcal
Total: -79.27 3.29 -75.98 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157191379.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.762 kcal
(2) G-P(sol) polarization free energy of solvation -79.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.031 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds