Wall clock time and date at job start Tue Mar 31 2020 12:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.12574 * 2 1 4 4 C 1.49869 * 109.13449 * 240.81973 * 2 1 3 5 5 C 1.29735 * 123.09415 * 220.03209 * 4 2 1 6 6 C 1.49867 * 123.08905 * 0.02562 * 5 4 2 7 7 H 1.09003 * 109.08560 * 259.14865 * 6 5 4 8 8 O 1.42899 * 109.13227 * 140.01235 * 6 5 4 9 9 C 1.49934 * 111.21198 * 19.56268 * 6 5 4 10 10 C 1.47065 * 118.71394 * 160.50531 * 9 6 5 11 11 O 1.21627 * 119.99704 * 179.97438 * 10 9 6 12 12 N 1.34774 * 120.00003 * 0.28497 * 10 9 6 13 13 C 1.39846 * 119.99614 * 174.68219 * 12 10 9 14 14 C 1.39319 * 119.94604 * 146.20505 * 13 12 10 15 15 C 1.38483 * 120.42331 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32789 * 359.97438 * 15 14 13 17 17 C 1.40748 * 119.88619 * 359.97438 * 16 15 14 18 18 C 1.41412 * 120.20260 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99636 * 151.77589 * 18 17 16 20 20 C 1.39929 * 120.00285 * 331.76643 * 18 17 16 21 21 N 1.30829 * 120.00161 * 348.91693 * 20 18 17 22 22 Si 1.86803 * 120.00185 * 168.91754 * 20 18 17 23 23 H 1.48505 * 109.46605 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47381 * 119.99964 * 22 20 18 25 25 H 1.48496 * 109.47120 * 240.00491 * 22 20 18 26 26 C 1.38261 * 119.95447 * 325.92220 * 13 12 10 27 27 C 1.31941 * 122.56985 * 340.79487 * 9 6 5 28 28 H 1.08997 * 109.47095 * 179.17778 * 1 2 3 29 29 H 1.08995 * 109.47333 * 299.17971 * 1 2 3 30 30 H 1.09002 * 109.46652 * 59.17941 * 1 2 3 31 31 H 0.96707 * 113.99536 * 300.82237 * 3 2 1 32 32 H 1.08003 * 118.45016 * 40.01009 * 4 2 1 33 33 H 1.07995 * 118.45446 * 180.02562 * 5 4 2 34 34 H 0.96704 * 114.00159 * 58.28137 * 8 6 5 35 35 H 0.96996 * 119.99972 * 354.68596 * 12 10 9 36 36 H 1.08000 * 119.78669 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.83411 * 179.97438 * 15 14 13 38 38 H 1.07997 * 120.05515 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00371 * 180.02562 * 21 20 18 40 40 H 1.08008 * 120.16168 * 0.02799 * 26 13 12 41 41 H 1.07999 * 118.71524 * 179.73876 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9982 1.3501 0.0000 4 6 2.0212 -0.6903 -1.2362 5 6 3.0397 -1.4940 -1.2415 6 6 3.8327 -1.8179 -0.0118 7 1 4.7510 -1.2306 -0.0150 8 8 4.1658 -3.2075 -0.0218 9 6 3.0555 -1.5078 1.2323 10 6 3.4629 -2.1402 2.4960 11 8 2.8492 -1.9048 3.5193 12 7 4.5201 -2.9757 2.5213 13 6 4.9761 -3.4896 3.7393 14 6 5.5094 -4.7755 3.7956 15 6 5.9644 -5.2940 4.9963 16 6 5.8950 -4.5435 6.1485 17 6 5.3597 -3.2425 6.1068 18 6 5.2858 -2.4655 7.2861 19 1 5.3228 -1.3878 7.2259 20 6 5.1644 -3.0930 8.5309 21 7 4.9021 -4.3731 8.5955 22 14 5.3768 -2.1028 10.1007 23 1 5.6646 -0.6869 9.7576 24 1 4.1294 -2.1734 10.9031 25 1 6.5048 -2.6608 10.8890 26 6 4.9025 -2.7188 4.8847 27 6 2.0169 -0.6940 1.2366 28 1 -0.3633 -1.0275 -0.0147 29 1 -0.3634 0.5010 0.8972 30 1 -0.3633 0.5266 -0.8826 31 1 1.6993 1.8700 -0.7587 32 1 1.5028 -0.5105 -2.1664 33 1 3.3296 -1.9511 -2.1760 34 1 4.6708 -3.4853 -0.7983 35 1 4.9647 -3.2205 1.6946 36 1 5.5683 -5.3717 2.8970 37 1 6.3756 -6.2921 5.0291 38 1 6.2507 -4.9524 7.0827 39 1 4.8176 -4.8080 9.4584 40 1 4.4930 -1.7203 4.8415 41 1 1.4995 -0.5180 2.1681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183538714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:45 Heat of formation + Delta-G solvation = -67.490244 kcal Electronic energy + Delta-G solvation = -25692.426859 eV Core-core repulsion = 21924.058927 eV Total energy + Delta-G solvation = -3768.367933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.54694 -39.03843 -37.46192 -37.01622 -34.75863 -34.16667 -32.86463 -31.89540 -31.01655 -29.71646 -28.07245 -26.36367 -25.20207 -23.81760 -22.53788 -21.22896 -20.66011 -19.66756 -18.12392 -17.93125 -17.36994 -17.13505 -16.48089 -15.74973 -15.38657 -15.21537 -14.72599 -14.52650 -14.43497 -14.15612 -13.99749 -13.59973 -13.12048 -12.97264 -12.78566 -12.76685 -12.30608 -12.04613 -12.01395 -11.60395 -11.33694 -11.21851 -11.03666 -10.64668 -10.53973 -10.40843 -10.31348 -10.05375 -9.88193 -9.62302 -9.47662 -9.34663 -9.06924 -8.75129 -7.32031 -6.75848 -6.57259 -4.25507 1.16051 1.70972 2.83470 2.99432 3.15991 3.22513 3.27635 3.60938 3.75069 3.94783 4.05371 4.16679 4.28411 4.35744 4.54773 4.59810 4.75174 4.77791 5.09219 5.25779 5.36484 5.45612 5.62651 5.78966 5.80116 5.81538 6.17146 6.24558 6.35409 6.36438 6.50246 6.95000 7.13044 7.16143 7.18755 7.26052 7.29347 7.37337 7.69466 7.85029 8.08476 8.18944 8.34023 8.39269 8.74799 8.89855 9.05057 9.08973 10.35888 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.003313 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.561067 B = 8448.765185 C = 9584.832162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.188 3.812 3 O -0.544 6.544 4 C -0.174 4.174 5 C -0.156 4.156 6 C 0.168 3.832 7 H 0.088 0.912 8 O -0.551 6.551 9 C -0.137 4.137 10 C 0.544 3.456 11 O -0.520 6.520 12 N -0.649 5.649 13 C 0.149 3.851 14 C -0.255 4.255 15 C -0.095 4.095 16 C -0.168 4.168 17 C 0.118 3.882 18 C -0.458 4.458 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.803 5.803 22 Si 0.910 3.090 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.273 1.273 26 C -0.208 4.208 27 C -0.060 4.060 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.378 0.622 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.385 0.615 35 H 0.407 0.593 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.277 0.723 40 H 0.106 0.894 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 6.071 -20.863 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.148 3.852 3 O -0.350 6.350 4 C -0.193 4.193 5 C -0.174 4.174 6 C 0.110 3.890 7 H 0.106 0.894 8 O -0.357 6.357 9 C -0.140 4.140 10 C 0.331 3.669 11 O -0.397 6.397 12 N -0.299 5.299 13 C 0.057 3.943 14 C -0.277 4.277 15 C -0.114 4.114 16 C -0.188 4.188 17 C 0.115 3.885 18 C -0.489 4.489 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.429 5.429 22 Si 0.735 3.265 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.199 1.199 26 C -0.230 4.230 27 C -0.080 4.080 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.226 0.774 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.234 0.766 35 H 0.248 0.752 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.571 5.883 -18.895 20.310 hybrid contribution 0.138 0.264 -0.914 0.961 sum -4.433 6.147 -19.808 21.209 Atomic orbital electron populations 1.22473 0.93894 1.03502 1.03240 1.18608 0.93510 0.82520 0.90597 1.86718 1.76681 1.21419 1.50207 1.22772 0.97759 0.99600 0.99160 1.22881 0.96819 0.98731 0.98976 1.19143 0.96333 0.83206 0.90305 0.89449 1.86496 1.77171 1.23849 1.48199 1.20837 0.97622 1.01443 0.94145 1.18112 0.80824 0.79993 0.87993 1.90857 1.53483 1.61432 1.33961 1.43675 1.30711 1.45713 1.09788 1.17493 0.99038 0.93013 0.84771 1.20078 1.15335 0.94752 0.97498 1.20481 1.00261 0.97805 0.92888 1.21398 1.03967 0.96423 0.97005 1.17507 0.87346 0.92112 0.91510 1.19575 1.44401 0.94609 0.90282 0.90571 1.25870 0.92425 0.95025 1.00966 1.69819 1.35346 1.10715 1.27021 0.86228 0.78498 0.80887 0.80861 1.18508 1.20062 1.19874 1.21012 1.08965 1.00496 0.92478 1.22636 0.93495 0.93292 0.98587 0.90965 0.90764 0.91644 0.77416 0.86303 0.86013 0.76587 0.75193 0.89251 0.89071 0.86108 0.91180 0.87616 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.69 37.16 0.32 -1.07 16 2 C 0.19 1.90 1.28 -93.69 -0.12 1.78 16 3 O -0.54 -5.47 12.91 -35.23 -0.45 -5.93 16 4 C -0.17 -1.45 8.69 -36.07 -0.31 -1.76 16 5 C -0.16 -1.31 9.46 -36.07 -0.34 -1.65 16 6 C 0.17 1.85 3.52 -29.81 -0.10 1.75 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 8 O -0.55 -5.69 10.22 -35.23 -0.36 -6.05 16 9 C -0.14 -2.11 5.66 -103.32 -0.58 -2.69 16 10 C 0.54 11.13 7.33 -12.68 -0.09 11.04 16 11 O -0.52 -12.87 13.75 5.25 0.07 -12.80 16 12 N -0.65 -13.10 5.09 -10.99 -0.06 -13.16 16 13 C 0.15 3.63 6.26 -83.79 -0.52 3.11 16 14 C -0.26 -5.97 9.97 -39.09 -0.39 -6.36 16 15 C -0.10 -2.33 10.01 -39.69 -0.40 -2.72 16 16 C -0.17 -4.59 8.66 -38.84 -0.34 -4.93 16 17 C 0.12 3.39 5.55 -106.85 -0.59 2.80 16 18 C -0.46 -13.08 9.06 -37.74 -0.34 -13.42 16 19 H 0.08 2.12 7.87 -52.48 -0.41 1.71 16 20 C 0.07 1.95 5.25 -17.35 -0.09 1.86 16 21 N -0.80 -21.94 10.82 55.55 0.60 -21.34 16 22 Si 0.91 19.87 29.57 -169.99 -5.03 14.84 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.21 -5.71 8.39 -38.68 -0.32 -6.03 16 27 C -0.06 -0.86 8.35 -36.59 -0.31 -1.16 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 1.95 9.02 45.56 0.41 2.36 16 32 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.39 1.83 9.05 45.56 0.41 2.24 16 35 H 0.41 6.76 5.61 -40.82 -0.23 6.53 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.12 3.37 6.18 -52.49 -0.32 3.04 16 39 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.11 2.99 6.44 -52.48 -0.34 2.65 16 41 H 0.14 2.24 7.27 -52.49 -0.38 1.86 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -35.77 344.36 -7.95 -43.73 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -3.38 Total: 14.99 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -4.54 Total: -19.47 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.55 Total: -34.50 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.74 Total: -24.78 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.77 -7.95 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183538714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.764 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds