Wall clock time and date at job start Tue Mar 31 2020 12:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42911 * 113.99913 * 2 1 4 4 O 1.42896 * 109.46710 * 75.00617 * 3 2 1 5 5 C 1.35817 * 117.00497 * 74.99936 * 4 3 2 6 6 C 1.38593 * 120.12072 * 270.01785 * 5 4 3 7 7 C 1.50703 * 119.96874 * 359.95884 * 6 5 4 8 8 C 1.38171 * 120.06742 * 179.97438 * 6 5 4 9 9 C 1.38426 * 120.31582 * 359.97438 * 8 6 5 10 10 C 1.37963 * 120.24896 * 359.74990 * 9 8 6 11 11 C 1.39386 * 119.92828 * 0.50458 * 10 9 8 12 12 C 1.48189 * 120.15523 * 179.77120 * 11 10 9 13 13 C 1.39474 * 119.66251 * 359.95396 * 12 11 10 14 14 C 1.38195 * 119.14597 * 180.27249 * 13 12 11 15 15 C 1.39439 * 118.46087 * 359.50404 * 14 13 12 16 16 O 1.35719 * 120.38088 * 180.27168 * 15 14 13 17 17 C 1.34813 * 116.99977 * 354.52143 * 16 15 14 18 18 H 1.07999 * 119.99954 * 5.05327 * 17 16 15 19 19 C 1.38646 * 119.99809 * 185.05342 * 17 16 15 20 20 N 1.31560 * 120.00171 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47125 * 90.00245 * 21 19 17 23 23 H 1.48500 * 109.47263 * 210.00168 * 21 19 17 24 24 H 1.48498 * 109.47430 * 330.00288 * 21 19 17 25 25 C 1.38933 * 119.23650 * 0.25457 * 15 14 13 26 26 N 1.31680 * 120.79288 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.46521 * 299.99980 * 1 2 3 28 28 H 1.08997 * 109.46999 * 59.99699 * 1 2 3 29 29 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47186 * 315.00299 * 3 2 1 31 31 H 1.09004 * 109.46456 * 195.00015 * 3 2 1 32 32 H 1.08988 * 109.47071 * 89.99550 * 7 6 5 33 33 H 1.08998 * 109.46643 * 209.99954 * 7 6 5 34 34 H 1.09001 * 109.46758 * 329.99170 * 7 6 5 35 35 H 1.07996 * 119.84335 * 180.02562 * 8 6 5 36 36 H 1.07998 * 119.86837 * 180.02562 * 9 8 6 37 37 H 1.08003 * 120.03798 * 180.25329 * 10 9 8 38 38 H 1.08000 * 120.42754 * 0.05296 * 13 12 11 39 39 H 1.07999 * 120.76961 * 179.77815 * 14 13 12 40 40 H 0.97005 * 120.00490 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.59967 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 8 1.8855 1.8824 1.3014 5 6 2.7184 1.4133 2.2663 6 6 2.3360 0.3380 3.0526 7 6 0.9933 -0.3118 2.8378 8 6 3.1843 -0.1386 4.0335 9 6 4.4193 0.4527 4.2370 10 6 4.8156 1.5202 3.4580 11 6 3.9657 2.0127 2.4690 12 6 4.3841 3.1623 1.6328 13 6 5.6321 3.7493 1.8410 14 6 6.0091 4.8244 1.0589 15 6 5.1254 5.2758 0.0793 16 8 5.4583 6.3252 -0.7145 17 6 6.6117 6.9638 -0.4330 18 1 7.2639 6.5851 0.3400 19 6 6.9605 8.1069 -1.1359 20 7 6.1658 8.5685 -2.0772 21 14 8.5583 8.9922 -0.7454 22 1 9.6488 8.4408 -1.5892 23 1 8.4017 10.4423 -1.0243 24 1 8.8948 8.7974 0.6878 25 6 3.9004 4.6388 -0.0751 26 7 3.5695 3.6195 0.6900 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.4942 1.9330 -0.7266 31 1 3.0649 1.2336 -0.2660 32 1 1.0910 -1.1146 2.1072 33 1 0.6327 -0.7211 3.7815 34 1 0.2852 0.4305 2.4696 35 1 2.8828 -0.9770 4.6439 36 1 5.0769 0.0740 5.0055 37 1 5.7815 1.9763 3.6169 38 1 6.2938 3.3708 2.6061 39 1 6.9679 5.3011 1.2001 40 1 6.4096 9.3685 -2.5687 41 1 3.2116 4.9834 -0.8323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244656130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:31 Heat of formation + Delta-G solvation = -46.423514 kcal Electronic energy + Delta-G solvation = -25878.335245 eV Core-core repulsion = 22110.880834 eV Total energy + Delta-G solvation = -3767.454411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.29658 -39.31232 -37.97451 -37.12838 -35.98805 -33.08605 -32.48118 -31.36121 -30.79625 -28.30273 -27.46326 -26.80111 -25.63564 -24.69043 -23.00320 -22.95316 -21.18428 -20.50617 -18.25872 -17.90926 -17.19582 -16.74037 -16.35612 -15.97028 -15.64590 -15.19268 -14.74141 -14.62282 -14.36900 -14.18417 -14.01094 -13.69430 -13.36868 -13.25533 -12.97712 -12.64562 -12.47298 -12.26724 -12.08242 -11.86525 -11.67579 -11.56624 -11.42147 -11.15637 -11.11183 -10.73819 -10.62682 -10.15646 -9.99922 -9.83382 -9.24122 -9.06503 -8.72826 -8.66219 -8.30116 -7.19287 -6.67449 -4.23411 1.07485 1.43730 2.01820 2.37252 3.01449 3.02682 3.07424 3.64761 3.79075 3.87532 4.20277 4.62085 4.69680 4.89388 4.94122 4.99311 5.11466 5.22096 5.26753 5.37906 5.42544 5.46605 5.48531 5.54808 5.61503 5.67292 5.73582 5.79121 5.86994 5.91967 5.98739 6.10330 6.26858 6.46434 6.48111 6.60214 6.72544 6.80057 6.90176 6.94143 7.05165 7.13704 7.41400 7.75037 7.88867 8.71640 8.77635 9.40932 10.48669 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.003253 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.780796 B = 8604.128420 C = 9755.298046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.236 3.764 4 O -0.317 6.317 5 C 0.111 3.889 6 C -0.096 4.096 7 C -0.110 4.110 8 C -0.125 4.125 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.020 4.020 12 C 0.037 3.963 13 C -0.098 4.098 14 C -0.204 4.204 15 C 0.109 3.891 16 O -0.158 6.158 17 C -0.394 4.394 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.850 5.850 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.266 1.266 25 C 0.030 3.970 26 N -0.414 5.414 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.275 0.725 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 -14.854 8.004 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.124 3.876 4 O -0.234 6.234 5 C 0.067 3.933 6 C -0.096 4.096 7 C -0.166 4.166 8 C -0.143 4.143 9 C -0.138 4.138 10 C -0.137 4.137 11 C -0.022 4.022 12 C -0.097 4.097 13 C -0.118 4.118 14 C -0.229 4.229 15 C 0.051 3.949 16 O -0.058 6.058 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.164 4.164 20 N -0.483 5.483 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.134 4.134 26 N -0.124 5.124 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.085 0.915 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.793 -14.931 7.505 18.039 hybrid contribution 1.779 1.093 0.305 2.110 sum -5.014 -13.838 7.810 16.662 Atomic orbital electron populations 1.22880 0.81431 1.02177 1.00574 1.88043 1.20133 1.30581 1.93746 1.23982 0.98687 0.81437 0.83542 1.86130 1.57325 1.61026 1.18933 1.18400 0.89434 0.93527 0.91983 1.20089 0.97418 0.95170 0.96930 1.20888 0.93555 1.00611 1.01584 1.20850 0.94358 1.00515 0.98621 1.20952 0.96536 0.96645 0.99709 1.21044 0.99563 0.97373 0.95728 1.18872 0.92796 0.94685 0.95802 1.18967 0.92729 0.98933 0.99022 1.21701 0.96083 0.95378 0.98623 1.21444 1.01910 1.00023 0.99570 1.20582 0.94060 0.89921 0.90362 1.83958 1.39417 1.36212 1.46252 1.21414 0.95895 1.08088 1.21570 0.88784 1.25373 0.99712 0.95847 0.95431 1.70031 1.36136 1.22050 1.20093 0.85649 0.79626 0.78605 0.79256 1.19618 1.19991 1.18990 1.21813 0.94220 0.95535 1.01860 1.67552 1.31909 1.09900 1.03010 0.92938 0.94200 0.90215 0.88648 0.89206 0.90695 0.92368 0.91108 0.86243 0.86082 0.85634 0.86135 0.84501 0.91545 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.48 101.05 0.96 1.22 16 2 O -0.40 -5.41 9.19 -59.04 -0.54 -5.96 16 3 C 0.24 3.45 6.09 101.05 0.62 4.07 16 4 O -0.32 -5.26 7.47 -42.98 -0.32 -5.58 16 5 C 0.11 1.83 5.59 -38.84 -0.22 1.61 16 6 C -0.10 -1.34 5.86 -104.51 -0.61 -1.95 16 7 C -0.11 -1.26 7.97 36.01 0.29 -0.97 16 8 C -0.12 -1.53 9.69 -39.54 -0.38 -1.92 16 9 C -0.12 -1.47 10.03 -39.61 -0.40 -1.86 16 10 C -0.12 -1.67 9.41 -39.26 -0.37 -2.04 16 11 C -0.02 -0.34 5.89 -104.77 -0.62 -0.96 16 12 C 0.04 0.71 6.73 -82.94 -0.56 0.15 16 13 C -0.10 -1.80 9.45 -39.14 -0.37 -2.17 16 14 C -0.20 -4.23 9.25 -39.15 -0.36 -4.59 16 15 C 0.11 2.51 6.67 -38.88 -0.26 2.25 16 16 O -0.16 -4.26 9.76 0.19 0.00 -4.26 16 17 C -0.39 -10.38 9.50 30.88 0.29 -10.08 16 18 H 0.09 2.27 5.25 -52.49 -0.28 2.00 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 20 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 21 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 C 0.03 0.63 11.14 -17.36 -0.19 0.44 16 26 N -0.41 -8.27 7.08 -9.63 -0.07 -8.34 16 27 H 0.05 0.53 5.69 -51.93 -0.30 0.24 16 28 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.27 8.01 -51.93 -0.42 0.86 16 31 H 0.09 1.43 7.86 -51.93 -0.41 1.03 16 32 H 0.07 0.84 6.83 -51.94 -0.35 0.48 16 33 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.07 0.84 5.22 -51.93 -0.27 0.57 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.56 6.18 -52.48 -0.32 1.23 16 38 H 0.12 1.81 6.18 -52.49 -0.32 1.49 16 39 H 0.14 2.75 5.75 -52.49 -0.30 2.45 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.15 2.97 8.06 -52.48 -0.42 2.54 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -30.08 340.08 -6.99 -37.07 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.64 Total: 6.25 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.28 Total: -15.78 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.69 Total: -31.22 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.86 Total: -15.80 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.08 -6.99 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244656130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.354 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds