Wall clock time and date at job start Tue Mar 31 2020 12:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42911 * 113.99913 * 2 1 4 4 O 1.42896 * 109.46710 * 75.00617 * 3 2 1 5 5 C 1.35817 * 117.00497 * 74.99936 * 4 3 2 6 6 C 1.38593 * 120.12072 * 270.01785 * 5 4 3 7 7 C 1.50703 * 119.96874 * 359.95884 * 6 5 4 8 8 C 1.38171 * 120.06742 * 179.97438 * 6 5 4 9 9 C 1.38426 * 120.31582 * 359.97438 * 8 6 5 10 10 C 1.37963 * 120.24896 * 359.74990 * 9 8 6 11 11 C 1.39386 * 119.92828 * 0.50458 * 10 9 8 12 12 C 1.48189 * 120.15523 * 179.77120 * 11 10 9 13 13 C 1.39474 * 119.66251 * 359.95396 * 12 11 10 14 14 C 1.38195 * 119.14597 * 180.27249 * 13 12 11 15 15 C 1.39439 * 118.46087 * 359.50404 * 14 13 12 16 16 O 1.35719 * 120.38088 * 180.27168 * 15 14 13 17 17 C 1.34813 * 116.99977 * 354.52143 * 16 15 14 18 18 H 1.07999 * 119.99954 * 5.05327 * 17 16 15 19 19 C 1.38646 * 119.99809 * 185.05342 * 17 16 15 20 20 N 1.31560 * 120.00171 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47125 * 90.00245 * 21 19 17 23 23 H 1.48500 * 109.47263 * 210.00168 * 21 19 17 24 24 H 1.48498 * 109.47430 * 330.00288 * 21 19 17 25 25 C 1.38933 * 119.23650 * 0.25457 * 15 14 13 26 26 N 1.31680 * 120.79288 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.46521 * 299.99980 * 1 2 3 28 28 H 1.08997 * 109.46999 * 59.99699 * 1 2 3 29 29 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47186 * 315.00299 * 3 2 1 31 31 H 1.09004 * 109.46456 * 195.00015 * 3 2 1 32 32 H 1.08988 * 109.47071 * 89.99550 * 7 6 5 33 33 H 1.08998 * 109.46643 * 209.99954 * 7 6 5 34 34 H 1.09001 * 109.46758 * 329.99170 * 7 6 5 35 35 H 1.07996 * 119.84335 * 180.02562 * 8 6 5 36 36 H 1.07998 * 119.86837 * 180.02562 * 9 8 6 37 37 H 1.08003 * 120.03798 * 180.25329 * 10 9 8 38 38 H 1.08000 * 120.42754 * 0.05296 * 13 12 11 39 39 H 1.07999 * 120.76961 * 179.77815 * 14 13 12 40 40 H 0.97005 * 120.00490 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.59967 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 8 1.8855 1.8824 1.3014 5 6 2.7184 1.4133 2.2663 6 6 2.3360 0.3380 3.0526 7 6 0.9933 -0.3118 2.8378 8 6 3.1843 -0.1386 4.0335 9 6 4.4193 0.4527 4.2370 10 6 4.8156 1.5202 3.4580 11 6 3.9657 2.0127 2.4690 12 6 4.3841 3.1623 1.6328 13 6 5.6321 3.7493 1.8410 14 6 6.0091 4.8244 1.0589 15 6 5.1254 5.2758 0.0793 16 8 5.4583 6.3252 -0.7145 17 6 6.6117 6.9638 -0.4330 18 1 7.2639 6.5851 0.3400 19 6 6.9605 8.1069 -1.1359 20 7 6.1658 8.5685 -2.0772 21 14 8.5583 8.9922 -0.7454 22 1 9.6488 8.4408 -1.5892 23 1 8.4017 10.4423 -1.0243 24 1 8.8948 8.7974 0.6878 25 6 3.9004 4.6388 -0.0751 26 7 3.5695 3.6195 0.6900 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.4942 1.9330 -0.7266 31 1 3.0649 1.2336 -0.2660 32 1 1.0910 -1.1146 2.1072 33 1 0.6327 -0.7211 3.7815 34 1 0.2852 0.4305 2.4696 35 1 2.8828 -0.9770 4.6439 36 1 5.0769 0.0740 5.0055 37 1 5.7815 1.9763 3.6169 38 1 6.2938 3.3708 2.6061 39 1 6.9679 5.3011 1.2001 40 1 6.4096 9.3685 -2.5687 41 1 3.2116 4.9834 -0.8323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244656130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:28 Heat of formation + Delta-G solvation = -63.669517 kcal Electronic energy + Delta-G solvation = -25879.083088 eV Core-core repulsion = 22110.880834 eV Total energy + Delta-G solvation = -3768.202254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64872 -40.78756 -39.18110 -38.68931 -37.08702 -34.56313 -34.03263 -32.94819 -32.03294 -29.74180 -28.41404 -27.92723 -27.35404 -25.77514 -24.56328 -24.38691 -22.41196 -21.80068 -20.02644 -19.23870 -18.70438 -17.88596 -17.46333 -17.37606 -17.11994 -16.33196 -16.27020 -15.94151 -15.85948 -15.49765 -15.32593 -14.99672 -14.69921 -14.29808 -14.27492 -14.11106 -14.08479 -13.61598 -13.25223 -13.13641 -12.96151 -12.83517 -12.63359 -12.45721 -12.18071 -12.16050 -11.85463 -11.69303 -11.21137 -11.05428 -10.98164 -10.61159 -10.29364 -10.12079 -9.36576 -8.75107 -8.54549 -6.21764 -0.23228 0.36978 0.38365 0.92846 1.35293 1.44853 1.52728 2.12602 2.51599 2.80474 2.87137 3.03344 3.17621 3.30251 3.50116 3.68893 3.98742 4.04690 4.15979 4.19203 4.22979 4.37259 4.43286 4.45016 4.54673 4.59725 4.60623 4.68852 4.78187 4.83924 4.89320 4.94086 4.99902 5.03275 5.21869 5.35157 5.36320 5.53014 5.55830 5.65730 5.79852 5.84256 5.90446 6.06452 6.72102 6.88043 7.10254 7.61338 8.66739 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.003253 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.780796 B = 8604.128420 C = 9755.298046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.413 6.413 3 C 0.242 3.758 4 O -0.333 6.333 5 C 0.092 3.908 6 C -0.109 4.109 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.115 4.115 11 C -0.063 4.063 12 C 0.056 3.944 13 C -0.098 4.098 14 C -0.199 4.199 15 C 0.079 3.921 16 O -0.210 6.210 17 C -0.418 4.418 18 H 0.107 0.893 19 C -0.016 4.016 20 N -0.911 5.911 21 Si 1.020 2.980 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.251 1.251 25 C 0.022 3.978 26 N -0.420 5.420 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.276 0.724 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 -17.927 11.360 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.333 6.333 3 C 0.130 3.870 4 O -0.251 6.251 5 C 0.048 3.952 6 C -0.110 4.110 7 C -0.162 4.162 8 C -0.130 4.130 9 C -0.133 4.133 10 C -0.134 4.134 11 C -0.064 4.064 12 C -0.080 4.080 13 C -0.117 4.117 14 C -0.225 4.225 15 C 0.024 3.976 16 O -0.114 6.114 17 C -0.494 4.494 18 H 0.124 0.876 19 C -0.215 4.215 20 N -0.548 5.548 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.174 1.174 25 C -0.139 4.139 26 N -0.129 5.129 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.085 0.915 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.274 -18.052 10.877 21.989 hybrid contribution 1.354 1.536 -0.441 2.095 sum -4.921 -16.515 10.435 20.146 Atomic orbital electron populations 1.23081 0.79621 1.03843 1.00938 1.88010 1.22043 1.29550 1.93730 1.23814 0.97872 0.82144 0.83183 1.86094 1.57653 1.61826 1.19529 1.18763 0.89485 0.94564 0.92432 1.20437 0.98875 0.94676 0.96991 1.20887 0.92152 1.00231 1.02901 1.21356 0.93754 1.00493 0.97350 1.21400 0.96940 0.95383 0.99611 1.21346 0.99663 0.97613 0.94729 1.19013 0.94399 0.95291 0.97723 1.19671 0.92399 0.98453 0.97463 1.22069 0.96445 0.94300 0.98929 1.21658 1.01642 1.00330 0.98839 1.20975 0.95314 0.89862 0.91410 1.83949 1.40507 1.38336 1.48578 1.21896 0.96323 1.08821 1.22379 0.87570 1.26622 1.03492 0.96388 0.95038 1.70170 1.38904 1.23291 1.22400 0.84569 0.74806 0.77031 0.79749 1.18678 1.19664 1.17413 1.21947 0.93956 0.95800 1.02217 1.67676 1.32281 1.09544 1.03437 0.93036 0.93438 0.87857 0.88149 0.91224 0.90483 0.89922 0.92003 0.82762 0.82293 0.83843 0.82028 0.83950 0.91488 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.48 113.37 1.08 1.46 16 2 O -0.41 -10.68 9.19 -126.21 -1.16 -11.84 16 3 C 0.24 7.17 6.09 113.37 0.69 7.86 16 4 O -0.33 -11.00 7.47 -68.73 -0.51 -11.51 16 5 C 0.09 2.89 5.59 22.75 0.13 3.02 16 6 C -0.11 -2.72 5.86 -19.79 -0.12 -2.84 16 7 C -0.11 -2.09 7.97 71.24 0.57 -1.52 16 8 C -0.11 -2.19 9.69 22.30 0.22 -1.97 16 9 C -0.12 -2.21 10.03 22.25 0.22 -1.99 16 10 C -0.11 -2.81 9.41 22.48 0.21 -2.59 16 11 C -0.06 -2.02 5.89 -19.96 -0.12 -2.14 16 12 C 0.06 2.09 6.73 41.95 0.28 2.37 16 13 C -0.10 -3.46 9.45 22.56 0.21 -3.25 16 14 C -0.20 -8.31 9.25 22.55 0.21 -8.10 16 15 C 0.08 3.82 6.67 22.73 0.15 3.97 16 16 O -0.21 -12.07 9.76 -22.22 -0.22 -12.28 16 17 C -0.42 -23.13 9.50 67.92 0.64 -22.49 16 18 H 0.11 5.29 5.25 -2.91 -0.02 5.28 16 19 C -0.02 -0.87 5.49 84.83 0.47 -0.41 16 20 N -0.91 -53.75 13.67 21.61 0.30 -53.45 16 21 Si 1.02 40.69 29.55 68.60 2.03 42.71 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 25 C 0.02 1.00 11.14 84.88 0.95 1.94 16 26 N -0.42 -17.13 7.08 -184.36 -1.31 -18.44 16 27 H 0.05 0.98 5.69 -2.39 -0.01 0.97 16 28 H 0.05 0.81 8.11 -2.39 -0.02 0.79 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.10 2.77 8.01 -2.39 -0.02 2.75 16 31 H 0.07 2.30 7.86 -2.38 -0.02 2.28 16 32 H 0.08 1.50 6.83 -2.39 -0.02 1.48 16 33 H 0.08 1.21 8.08 -2.39 -0.02 1.20 16 34 H 0.06 1.34 5.22 -2.39 -0.01 1.33 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.14 2.89 6.18 -2.91 -0.02 2.87 16 38 H 0.16 4.29 6.18 -2.91 -0.02 4.27 16 39 H 0.14 5.73 5.75 -2.91 -0.02 5.72 16 40 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 41 H 0.15 6.50 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -70.29 340.08 5.99 -64.30 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 1.07 Total: 27.19 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 5.79 Total: -26.68 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -1.01 Total: -71.89 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.89 Total: -35.64 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -70.29 5.99 -64.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244656130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.627 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds