Wall clock time and date at job start Tue Mar 31 2020 10:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00584 * 2 1 4 4 H 1.48498 * 109.47189 * 270.00230 * 3 2 1 5 5 H 1.48501 * 109.46897 * 30.00097 * 3 2 1 6 6 H 1.48503 * 109.47280 * 149.99773 * 3 2 1 7 7 C 1.37879 * 119.99347 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00465 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00265 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47416 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47098 * 65.00062 * 12 11 10 14 14 C 1.34947 * 116.99817 * 180.02562 * 13 12 11 15 15 O 1.21659 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.46191 * 120.00018 * 180.02562 * 14 13 12 17 17 N 1.37695 * 126.33730 * 0.02562 * 16 14 13 18 18 H 0.96995 * 125.55399 * 359.71149 * 17 16 14 19 19 C 1.35608 * 108.89092 * 179.97438 * 17 16 14 20 20 C 1.35155 * 109.24267 * 359.97438 * 19 17 16 21 21 C 1.39199 * 126.34036 * 179.97438 * 16 14 13 22 22 C 1.48163 * 126.63793 * 0.03562 * 21 16 14 23 23 C 1.39451 * 120.13613 * 309.73126 * 22 21 16 24 24 C 1.37988 * 119.86877 * 179.72064 * 23 22 21 25 25 C 1.38338 * 120.12813 * 0.52968 * 24 23 22 26 26 C 1.38347 * 120.27098 * 359.76458 * 25 24 23 27 27 C 1.37990 * 120.12983 * 359.95813 * 26 25 24 28 28 H 0.97008 * 119.99303 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47213 * 59.99489 * 9 7 2 30 30 H 1.09006 * 109.47058 * 299.99721 * 9 7 2 31 31 H 1.08999 * 109.46952 * 59.99713 * 11 10 9 32 32 H 1.09000 * 109.47162 * 300.00577 * 11 10 9 33 33 H 1.09002 * 109.46846 * 304.99821 * 12 11 10 34 34 H 1.09002 * 109.46991 * 184.99927 * 12 11 10 35 35 H 1.08004 * 125.37779 * 179.97438 * 19 17 16 36 36 H 1.08007 * 126.08612 * 179.97438 * 20 19 17 37 37 H 1.08006 * 120.06248 * 359.97122 * 23 22 21 38 38 H 1.07996 * 119.93484 * 180.27576 * 24 23 22 39 39 H 1.08005 * 119.86414 * 179.74902 * 25 24 23 40 40 H 1.07999 * 119.93158 * 179.97438 * 26 25 24 41 41 H 1.07994 * 120.06414 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5854 0.0005 11 6 1.5648 -4.8755 0.0011 12 6 2.6476 -5.9563 0.0017 13 8 3.3869 -5.8893 1.2227 14 6 4.3869 -6.7811 1.3832 15 8 4.6234 -7.5936 0.5092 16 6 5.1853 -6.7716 2.6078 17 7 5.0312 -5.9159 3.6756 18 1 4.3707 -5.2086 3.7408 19 6 5.9572 -6.2195 4.6187 20 6 6.7100 -7.2554 4.1865 21 6 6.2413 -7.6264 2.9107 22 6 6.7700 -8.7156 2.0567 23 6 5.9016 -9.6569 1.5050 24 6 6.3993 -10.6657 0.7058 25 6 7.7581 -10.7506 0.4603 26 6 8.6253 -9.8233 1.0097 27 6 8.1388 -8.8067 1.8060 28 1 -0.4849 0.8402 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 0.9443 -4.9827 -0.8886 32 1 0.9449 -4.9822 0.8913 33 1 3.3212 -5.7962 -0.8402 34 1 2.1815 -6.9376 -0.0874 35 1 6.0745 -5.7135 5.5656 36 1 7.5262 -7.7162 4.7232 37 1 4.8411 -9.5942 1.6997 38 1 5.7272 -11.3927 0.2744 39 1 8.1434 -11.5443 -0.1626 40 1 9.6851 -9.8951 0.8148 41 1 8.8167 -8.0831 2.2340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325480855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:55 Heat of formation + Delta-G solvation = -66.419747 kcal Electronic energy + Delta-G solvation = -24822.712034 eV Core-core repulsion = 21054.390521 eV Total energy + Delta-G solvation = -3768.321512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53754 -39.89452 -38.82108 -37.09594 -36.08071 -32.83816 -32.71147 -30.97019 -30.67929 -29.82288 -28.74689 -26.97222 -24.17589 -22.75225 -22.56360 -22.39255 -21.77537 -20.80186 -19.47527 -18.97799 -17.17510 -16.67407 -16.54613 -16.41491 -15.57470 -15.43861 -15.09459 -14.90408 -14.63040 -14.40931 -14.11466 -13.76254 -13.64063 -13.41070 -13.08072 -13.00072 -12.81367 -12.64429 -12.40343 -11.98803 -11.49239 -11.25225 -11.10806 -10.96441 -10.89734 -10.81945 -10.53889 -10.36885 -10.09529 -9.50951 -9.18482 -8.93365 -8.88266 -8.71371 -8.27078 -8.17996 -6.17040 -4.18995 0.84569 1.44616 1.51616 2.50532 2.66700 3.04311 3.05949 3.26314 3.31467 3.36532 3.84073 4.27731 4.61130 4.66726 4.84547 4.90177 4.93160 4.99378 5.11102 5.15514 5.19559 5.19941 5.43067 5.46367 5.52693 5.56578 5.80699 5.83282 5.91146 5.98672 6.03141 6.06530 6.32174 6.48029 6.50773 6.52812 6.58594 6.72101 6.98818 6.99530 7.20439 7.33726 7.72725 7.84601 8.07057 8.46596 8.93556 9.46011 10.94445 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.002616 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.223017 B =10699.149007 C =11299.878332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.342 6.342 14 C 0.528 3.472 15 O -0.493 6.493 16 C -0.024 4.024 17 N -0.522 5.522 18 H 0.431 0.569 19 C 0.036 3.964 20 C -0.200 4.200 21 C -0.038 4.038 22 C -0.020 4.020 23 C -0.068 4.068 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.129 4.129 27 C -0.103 4.103 28 H 0.265 0.735 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -19.762 8.100 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.259 6.259 14 C 0.374 3.626 15 O -0.381 6.381 16 C -0.136 4.136 17 N -0.116 5.116 18 H 0.270 0.730 19 C -0.101 4.101 20 C -0.224 4.224 21 C -0.047 4.047 22 C -0.021 4.021 23 C -0.086 4.086 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.194 0.806 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.587 -19.698 7.782 24.637 hybrid contribution -0.397 1.283 -0.146 1.351 sum 12.190 -18.415 7.636 23.367 Atomic orbital electron populations 1.69962 1.06105 1.27241 1.50415 1.24952 0.94998 0.99468 0.95069 0.86325 0.79636 0.82156 0.78319 1.20395 1.21026 1.19628 1.21039 0.94071 0.89289 1.51013 0.91553 1.20238 0.88734 0.83485 0.95510 1.87918 1.35353 1.12631 1.95231 1.22332 0.93212 0.85421 1.00585 1.22836 0.93672 0.98798 0.84484 1.86226 1.43500 1.54208 1.41917 1.19750 0.78591 0.78870 0.85436 1.90926 1.67679 1.37773 1.41707 1.19355 1.03597 1.00506 0.90134 1.42084 1.28147 1.27651 1.13741 0.72979 1.22045 0.92608 0.99994 0.95468 1.20874 1.04379 1.00950 0.96185 1.18547 0.95095 0.95936 0.95080 1.18099 0.93018 0.93693 0.97288 1.21108 0.99152 0.93058 0.95324 1.21021 0.95403 0.98819 0.99012 1.21153 0.93632 0.99116 0.99930 1.20993 0.99542 0.95509 0.98616 1.21140 0.94194 0.98214 0.98554 0.92590 0.97577 0.97545 0.91855 0.93306 0.90569 0.90549 0.80609 0.83407 0.86405 0.86262 0.86437 0.86214 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.10 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 9 C 0.19 5.27 5.69 36.00 0.20 5.47 16 10 O -0.39 -9.39 10.29 -40.08 -0.41 -9.81 16 11 C 0.06 1.12 6.32 37.16 0.23 1.36 16 12 C 0.08 1.21 5.76 37.16 0.21 1.43 16 13 O -0.34 -5.71 10.09 -44.29 -0.45 -6.15 16 14 C 0.53 8.39 7.89 33.92 0.27 8.66 16 15 O -0.49 -8.41 13.20 -19.39 -0.26 -8.66 16 16 C -0.02 -0.33 7.11 -81.68 -0.58 -0.91 16 17 N -0.52 -5.71 6.09 -9.26 -0.06 -5.77 16 18 H 0.43 4.24 8.96 -40.82 -0.37 3.87 16 19 C 0.04 0.31 11.86 -16.98 -0.20 0.11 16 20 C -0.20 -1.98 10.73 -39.68 -0.43 -2.41 16 21 C -0.04 -0.49 5.67 -104.46 -0.59 -1.08 16 22 C -0.02 -0.26 5.27 -104.92 -0.55 -0.82 16 23 C -0.07 -0.88 7.64 -39.22 -0.30 -1.18 16 24 C -0.12 -1.40 10.03 -39.64 -0.40 -1.80 16 25 C -0.12 -1.22 10.04 -39.50 -0.40 -1.62 16 26 C -0.13 -1.31 10.03 -39.63 -0.40 -1.70 16 27 C -0.10 -1.16 9.74 -39.22 -0.38 -1.54 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 35 H 0.18 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.12 1.56 7.35 -52.48 -0.39 1.17 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -34.17 362.08 -9.10 -43.27 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.37 Total: 0.79 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.73 Total: -9.93 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.68 Total: -31.61 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.12 Total: -24.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.17 -9.10 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325480855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.151 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds