Wall clock time and date at job start Tue Mar 31 2020 10:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00584 * 2 1 4 4 H 1.48498 * 109.47189 * 270.00230 * 3 2 1 5 5 H 1.48501 * 109.46897 * 30.00097 * 3 2 1 6 6 H 1.48503 * 109.47280 * 149.99773 * 3 2 1 7 7 C 1.37879 * 119.99347 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00465 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00265 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47416 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47098 * 65.00062 * 12 11 10 14 14 C 1.34947 * 116.99817 * 180.02562 * 13 12 11 15 15 O 1.21659 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.46191 * 120.00018 * 180.02562 * 14 13 12 17 17 N 1.37695 * 126.33730 * 0.02562 * 16 14 13 18 18 H 0.96995 * 125.55399 * 359.71149 * 17 16 14 19 19 C 1.35608 * 108.89092 * 179.97438 * 17 16 14 20 20 C 1.35155 * 109.24267 * 359.97438 * 19 17 16 21 21 C 1.39199 * 126.34036 * 179.97438 * 16 14 13 22 22 C 1.48163 * 126.63793 * 0.03562 * 21 16 14 23 23 C 1.39451 * 120.13613 * 309.73126 * 22 21 16 24 24 C 1.37988 * 119.86877 * 179.72064 * 23 22 21 25 25 C 1.38338 * 120.12813 * 0.52968 * 24 23 22 26 26 C 1.38347 * 120.27098 * 359.76458 * 25 24 23 27 27 C 1.37990 * 120.12983 * 359.95813 * 26 25 24 28 28 H 0.97008 * 119.99303 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47213 * 59.99489 * 9 7 2 30 30 H 1.09006 * 109.47058 * 299.99721 * 9 7 2 31 31 H 1.08999 * 109.46952 * 59.99713 * 11 10 9 32 32 H 1.09000 * 109.47162 * 300.00577 * 11 10 9 33 33 H 1.09002 * 109.46846 * 304.99821 * 12 11 10 34 34 H 1.09002 * 109.46991 * 184.99927 * 12 11 10 35 35 H 1.08004 * 125.37779 * 179.97438 * 19 17 16 36 36 H 1.08007 * 126.08612 * 179.97438 * 20 19 17 37 37 H 1.08006 * 120.06248 * 359.97122 * 23 22 21 38 38 H 1.07996 * 119.93484 * 180.27576 * 24 23 22 39 39 H 1.08005 * 119.86414 * 179.74902 * 25 24 23 40 40 H 1.07999 * 119.93158 * 179.97438 * 26 25 24 41 41 H 1.07994 * 120.06414 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5854 0.0005 11 6 1.5648 -4.8755 0.0011 12 6 2.6476 -5.9563 0.0017 13 8 3.3869 -5.8893 1.2227 14 6 4.3869 -6.7811 1.3832 15 8 4.6234 -7.5936 0.5092 16 6 5.1853 -6.7716 2.6078 17 7 5.0312 -5.9159 3.6756 18 1 4.3707 -5.2086 3.7408 19 6 5.9572 -6.2195 4.6187 20 6 6.7100 -7.2554 4.1865 21 6 6.2413 -7.6264 2.9107 22 6 6.7700 -8.7156 2.0567 23 6 5.9016 -9.6569 1.5050 24 6 6.3993 -10.6657 0.7058 25 6 7.7581 -10.7506 0.4603 26 6 8.6253 -9.8233 1.0097 27 6 8.1388 -8.8067 1.8060 28 1 -0.4849 0.8402 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 0.9443 -4.9827 -0.8886 32 1 0.9449 -4.9822 0.8913 33 1 3.3212 -5.7962 -0.8402 34 1 2.1815 -6.9376 -0.0874 35 1 6.0745 -5.7135 5.5656 36 1 7.5262 -7.7162 4.7232 37 1 4.8411 -9.5942 1.6997 38 1 5.7272 -11.3927 0.2744 39 1 8.1434 -11.5443 -0.1626 40 1 9.6851 -9.8951 0.8148 41 1 8.8167 -8.0831 2.2340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325480855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:54 Heat of formation + Delta-G solvation = -86.288755 kcal Electronic energy + Delta-G solvation = -24823.573618 eV Core-core repulsion = 21054.390521 eV Total energy + Delta-G solvation = -3769.183097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45107 -41.06194 -39.64938 -38.76689 -37.49976 -34.98178 -33.57245 -32.03879 -31.74641 -30.88249 -29.74651 -28.98073 -25.29045 -24.55988 -23.74941 -23.39280 -22.99988 -21.65293 -20.39895 -19.97693 -18.73586 -18.27537 -18.03594 -17.40763 -17.07940 -16.65758 -16.46997 -16.18420 -15.91756 -15.74951 -15.21265 -15.10891 -14.53193 -14.33294 -14.29773 -14.11358 -13.86305 -13.73819 -13.72647 -13.27247 -13.20879 -12.95554 -12.73730 -12.50214 -12.10431 -12.01404 -11.91974 -11.75706 -11.69221 -11.31877 -10.93522 -10.36780 -10.31780 -9.73499 -9.51383 -9.07938 -8.35545 -6.47949 -0.12311 0.58505 0.63823 1.38327 1.40753 1.52760 1.54520 1.70002 2.01699 2.18404 2.31646 2.98432 2.98620 3.00996 3.72155 3.84985 3.89470 4.05433 4.08669 4.15786 4.27280 4.30614 4.34440 4.36885 4.47550 4.59508 4.66813 4.75776 4.76826 4.81360 5.08116 5.13427 5.17661 5.22244 5.31155 5.50684 5.52071 5.64878 5.67638 5.73778 5.85478 5.91373 6.16848 6.43681 6.45521 6.66029 6.75589 7.23743 8.76590 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.002616 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.223017 B =10699.149007 C =11299.878332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.056 3.944 12 C 0.081 3.919 13 O -0.356 6.356 14 C 0.525 3.475 15 O -0.515 6.515 16 C -0.068 4.068 17 N -0.523 5.523 18 H 0.434 0.566 19 C 0.063 3.937 20 C -0.210 4.210 21 C -0.041 4.041 22 C -0.044 4.044 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.111 4.111 28 H 0.272 0.728 29 H -0.009 1.009 30 H -0.009 1.009 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.222 0.778 36 H 0.173 0.827 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.614 -19.580 9.139 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.021 4.021 12 C 0.007 3.993 13 O -0.273 6.273 14 C 0.373 3.627 15 O -0.405 6.405 16 C -0.179 4.179 17 N -0.118 5.118 18 H 0.274 0.726 19 C -0.075 4.075 20 C -0.233 4.233 21 C -0.050 4.050 22 C -0.044 4.044 23 C -0.108 4.108 24 C -0.154 4.154 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.130 4.130 28 H 0.081 0.919 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.238 0.762 36 H 0.190 0.810 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.524 -19.539 8.820 25.894 hybrid contribution -0.972 1.104 -0.414 1.528 sum 13.551 -18.434 8.406 24.375 Atomic orbital electron populations 1.70058 1.07662 1.28730 1.50274 1.25935 0.95982 1.03291 0.93845 0.85199 0.78385 0.77086 0.78852 1.19383 1.19698 1.18944 1.21360 0.94002 0.90911 1.52553 0.92306 1.19875 0.88539 0.84320 0.93921 1.87865 1.35573 1.14183 1.95338 1.22635 0.94303 0.83248 1.01902 1.22784 0.93102 0.99210 0.84220 1.86213 1.44121 1.54933 1.41995 1.20131 0.78252 0.78228 0.86127 1.90895 1.68315 1.38547 1.42707 1.19259 1.05020 1.02921 0.90705 1.42173 1.28716 1.27383 1.13534 0.72648 1.22835 0.90199 0.98639 0.95792 1.21239 1.05349 1.01476 0.95229 1.18883 0.94620 0.95360 0.96119 1.18346 0.93918 0.94050 0.98101 1.21130 0.98600 0.94331 0.96690 1.21282 0.96543 0.98752 0.98789 1.21514 0.93085 0.99694 0.99716 1.21379 1.01037 0.94726 0.97601 1.21391 0.93718 0.98975 0.98876 0.91941 0.99104 0.99111 0.90015 0.92417 0.91538 0.87668 0.76193 0.80995 0.87997 0.84929 0.83745 0.83432 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.98 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -32.81 9.43 25.60 0.24 -32.57 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.62 5.69 71.23 0.41 12.03 16 10 O -0.41 -20.18 10.29 -144.34 -1.49 -21.67 16 11 C 0.06 2.05 6.32 71.98 0.45 2.51 16 12 C 0.08 2.62 5.76 71.98 0.41 3.04 16 13 O -0.36 -12.27 10.09 -55.66 -0.56 -12.84 16 14 C 0.53 17.42 7.89 69.89 0.55 17.97 16 15 O -0.51 -18.42 13.20 19.31 0.25 -18.16 16 16 C -0.07 -1.91 7.11 40.52 0.29 -1.62 16 17 N -0.52 -11.11 6.09 -183.19 -1.12 -12.23 16 18 H 0.43 8.41 8.96 -92.71 -0.83 7.58 16 19 C 0.06 0.94 11.86 83.40 0.99 1.93 16 20 C -0.21 -3.76 10.73 22.21 0.24 -3.53 16 21 C -0.04 -1.03 5.67 -19.76 -0.11 -1.15 16 22 C -0.04 -1.13 5.27 -20.05 -0.11 -1.24 16 23 C -0.09 -2.39 7.64 22.50 0.17 -2.21 16 24 C -0.14 -3.04 10.03 22.23 0.22 -2.81 16 25 C -0.12 -2.30 10.04 22.32 0.22 -2.07 16 26 C -0.13 -2.40 10.03 22.24 0.22 -2.17 16 27 C -0.11 -2.41 9.74 22.50 0.22 -2.19 16 28 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 34 H 0.11 2.79 8.13 -2.39 -0.02 2.78 16 35 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.10 2.93 7.35 -2.91 -0.02 2.91 16 38 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -75.49 362.08 4.51 -70.98 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.22 Total: 15.88 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.89 Total: -13.17 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.83 Total: -67.12 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -1.79 Total: -52.67 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.49 4.51 -70.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325480855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.305 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds