Wall clock time and date at job start Tue Mar 31 2020 11:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48491 * 109.47483 * 239.99848 * 3 2 1 5 5 H 1.48504 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47116 * 119.99263 * 3 2 1 7 7 C 1.37881 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00142 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47020 * 59.99493 * 9 7 2 11 11 O 1.45191 * 109.47219 * 179.97438 * 9 7 2 12 12 C 1.34232 * 117.00329 * 209.99842 * 11 9 7 13 13 O 1.20829 * 119.99123 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00335 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.46926 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.46875 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47285 * 179.97438 * 16 15 14 18 18 C 1.38675 * 120.41529 * 89.99913 * 17 16 15 19 19 C 1.38631 * 118.41792 * 179.97438 * 18 17 16 20 20 C 1.38221 * 119.16077 * 0.25627 * 19 18 17 21 21 N 1.31860 * 120.76509 * 359.49797 * 20 19 18 22 22 C 1.31882 * 121.72556 * 0.49011 * 21 20 19 23 23 C 1.50708 * 109.46876 * 299.99593 * 9 7 2 24 24 C 1.34515 * 125.78621 * 99.99938 * 23 9 7 25 25 C 1.41386 * 106.83729 * 180.02562 * 24 23 9 26 26 C 1.34506 * 106.84024 * 0.02562 * 25 24 23 27 27 O 1.34294 * 125.79032 * 279.69461 * 23 9 7 28 28 H 0.96996 * 119.99569 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46982 * 60.00009 * 14 12 11 30 30 H 1.09001 * 109.46790 * 299.99860 * 14 12 11 31 31 H 1.08995 * 109.47078 * 59.99994 * 15 14 12 32 32 H 1.09001 * 109.47331 * 299.99602 * 15 14 12 33 33 H 1.09008 * 109.47427 * 59.99953 * 16 15 14 34 34 H 1.08998 * 109.47562 * 299.99860 * 16 15 14 35 35 H 1.07998 * 120.79161 * 359.96013 * 18 17 16 36 36 H 1.08002 * 120.41548 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.62066 * 179.74470 * 20 19 18 38 38 H 1.07993 * 119.62126 * 179.75488 * 22 21 20 39 39 H 1.08003 * 126.58034 * 0.03976 * 24 23 9 40 40 H 1.08003 * 126.57370 * 179.97438 * 25 24 23 41 41 H 1.08003 * 125.79152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 2.1945 -3.6028 0.0005 12 6 1.8033 -4.7391 -0.5974 13 8 0.7084 -4.8092 -1.1036 14 6 2.7295 -5.9272 -0.6374 15 6 2.0453 -7.0828 -1.3703 16 6 2.9859 -8.2888 -1.4114 17 6 2.3117 -9.4274 -2.1327 18 6 2.4505 -9.5693 -3.5052 19 6 1.8129 -10.6320 -4.1264 20 6 1.0610 -11.5055 -3.3634 21 7 0.9550 -11.3423 -2.0592 22 6 1.5479 -10.3434 -1.4348 23 6 0.3842 -2.5788 1.2308 24 6 -0.9359 -2.3256 1.2806 25 6 -1.3399 -2.5196 2.6216 26 6 -0.2423 -2.8791 3.3110 27 8 0.7977 -2.9200 2.4621 28 1 -0.4849 0.8400 -0.0004 29 1 2.9703 -6.2346 0.3803 30 1 3.6460 -5.6559 -1.1614 31 1 1.8042 -6.7757 -2.3879 32 1 1.1290 -7.3540 -0.8458 33 1 3.2274 -8.5961 -0.3938 34 1 3.9019 -8.0175 -1.9361 35 1 3.0410 -8.8684 -4.0766 36 1 1.8988 -10.7729 -5.1937 37 1 0.5577 -12.3336 -3.8403 38 1 1.4350 -10.2398 -0.3658 39 1 -1.5664 -2.0309 0.4547 40 1 -2.3380 -2.4009 3.0166 41 1 -0.2048 -3.1031 4.3669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:07 Heat of formation + Delta-G solvation = -50.574983 kcal Electronic energy + Delta-G solvation = -24989.771358 eV Core-core repulsion = 21222.136926 eV Total energy + Delta-G solvation = -3767.634432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35928 -40.38648 -39.57058 -36.17264 -35.16964 -33.29399 -32.48276 -31.72131 -31.56384 -29.68729 -27.60006 -26.56547 -23.85382 -23.75802 -22.73175 -21.38721 -20.63425 -20.07850 -19.24630 -17.38691 -17.16038 -16.69832 -16.64539 -16.47849 -15.70088 -15.48907 -15.13718 -14.68923 -14.44040 -14.30361 -14.20773 -13.66524 -13.26270 -13.07203 -12.81402 -12.65585 -12.26447 -11.93315 -11.81043 -11.70387 -11.57561 -11.35975 -11.24152 -11.13803 -10.96712 -10.78640 -10.40455 -10.11299 -9.98771 -9.72273 -9.61333 -9.42079 -9.13772 -8.83375 -8.65996 -7.27086 -6.22881 -4.41105 0.89666 1.07595 2.85721 2.91056 3.21749 3.25280 3.26890 3.47780 3.64285 3.94229 4.17663 4.22961 4.27420 4.53488 4.57723 4.76835 4.79581 5.01312 5.03689 5.06367 5.15425 5.29323 5.44428 5.55130 5.61637 5.66087 5.75054 5.87267 5.88984 5.95718 6.06056 6.18326 6.25716 6.36356 6.50159 6.71385 6.97420 7.13802 7.21941 7.38564 7.68197 7.68723 7.77157 7.85106 8.34591 8.50417 8.76942 9.25829 10.75900 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002734 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.377904 B =10239.575212 C =11049.344932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.298 3.702 10 H 0.078 0.922 11 O -0.350 6.350 12 C 0.451 3.549 13 O -0.517 6.517 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.078 4.078 17 C -0.128 4.128 18 C -0.073 4.073 19 C -0.171 4.171 20 C 0.088 3.912 21 N -0.485 5.485 22 C 0.101 3.899 23 C 0.027 3.973 24 C -0.179 4.179 25 C -0.217 4.217 26 C -0.089 4.089 27 O -0.177 6.177 28 H 0.269 0.731 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -16.493 -3.460 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.245 3.755 10 H 0.096 0.904 11 O -0.266 6.266 12 C 0.294 3.706 13 O -0.407 6.407 14 C -0.152 4.152 15 C -0.140 4.140 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.191 4.191 20 C -0.069 4.069 21 N -0.193 5.193 22 C -0.056 4.056 23 C -0.024 4.024 24 C -0.198 4.198 25 C -0.237 4.237 26 C -0.156 4.156 27 O -0.074 6.074 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.147 -17.010 -3.047 17.772 hybrid contribution 0.324 1.829 -0.335 1.887 sum 4.471 -15.181 -3.382 16.183 Atomic orbital electron populations 1.70025 1.05921 1.27790 1.46470 1.24952 0.95140 0.99568 0.94010 0.86286 0.79343 0.81303 0.78998 1.19722 1.20930 1.19842 1.20856 0.94098 0.87629 1.54363 0.90492 1.19158 0.85721 0.81878 0.88774 0.90446 1.86545 1.48427 1.22139 1.69503 1.23514 0.86865 0.85104 0.75153 1.90622 1.22823 1.83415 1.43817 1.21343 0.98649 0.91377 1.03856 1.21391 0.98431 0.92305 1.01913 1.20591 0.98100 0.92218 1.00644 1.20935 0.99337 0.97912 0.94754 1.21553 0.97447 0.96836 0.94113 1.22149 0.99165 0.96339 1.01466 1.22749 0.96031 0.98369 0.89719 1.67687 1.19786 1.20949 1.10889 1.22727 0.92590 0.89800 1.00487 1.23545 0.94150 1.00148 0.84604 1.21211 0.94808 1.06988 0.96828 1.21693 0.98912 1.07984 0.95113 1.23601 0.86125 1.10308 0.95585 1.83985 1.36735 1.68441 1.18203 0.92089 0.88049 0.88003 0.90830 0.90763 0.90200 0.90345 0.84747 0.84859 0.82968 0.82756 0.84164 0.85138 0.79871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 10.95 55.43 0.61 -23.37 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.62 8.89 -34.44 -0.31 -14.93 16 8 H 0.08 2.07 7.81 -52.49 -0.41 1.65 16 9 C 0.30 7.85 2.42 -29.03 -0.07 7.78 16 10 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 11 O -0.35 -8.12 9.85 -41.33 -0.41 -8.52 16 12 C 0.45 8.91 7.92 36.00 0.29 9.20 16 13 O -0.52 -11.69 15.20 -18.75 -0.29 -11.97 16 14 C -0.11 -1.48 5.81 -27.88 -0.16 -1.65 16 15 C -0.10 -1.19 4.49 -26.73 -0.12 -1.31 16 16 C -0.08 -0.66 5.37 -27.88 -0.15 -0.81 16 17 C -0.13 -1.22 5.15 -104.48 -0.54 -1.76 16 18 C -0.07 -0.65 9.86 -39.28 -0.39 -1.04 16 19 C -0.17 -1.42 10.11 -39.44 -0.40 -1.82 16 20 C 0.09 0.83 11.18 -17.55 -0.20 0.63 16 21 N -0.48 -5.62 10.36 -13.25 -0.14 -5.75 16 22 C 0.10 1.06 10.86 -17.55 -0.19 0.87 16 23 C 0.03 0.69 5.53 -35.62 -0.20 0.49 16 24 C -0.18 -4.47 9.17 -39.70 -0.36 -4.83 16 25 C -0.22 -4.67 10.91 -39.70 -0.43 -5.11 16 26 C -0.09 -1.83 12.09 29.41 0.36 -1.47 16 27 O -0.18 -4.34 10.65 4.39 0.05 -4.29 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.08 0.57 8.09 -51.92 -0.42 0.15 16 34 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.14 3.59 7.87 -52.48 -0.41 3.18 16 40 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.18 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -33.06 361.09 -8.12 -41.17 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.39 Total: 5.50 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.97 Total: -13.97 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.47 Total: -29.12 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.65 Total: -24.79 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.06 -8.12 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.402 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds