Wall clock time and date at job start Tue Mar 31 2020 11:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48491 * 109.47483 * 239.99848 * 3 2 1 5 5 H 1.48504 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47116 * 119.99263 * 3 2 1 7 7 C 1.37881 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00142 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47020 * 59.99493 * 9 7 2 11 11 O 1.45191 * 109.47219 * 179.97438 * 9 7 2 12 12 C 1.34232 * 117.00329 * 209.99842 * 11 9 7 13 13 O 1.20829 * 119.99123 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00335 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.46926 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.46875 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47285 * 179.97438 * 16 15 14 18 18 C 1.38675 * 120.41529 * 89.99913 * 17 16 15 19 19 C 1.38631 * 118.41792 * 179.97438 * 18 17 16 20 20 C 1.38221 * 119.16077 * 0.25627 * 19 18 17 21 21 N 1.31860 * 120.76509 * 359.49797 * 20 19 18 22 22 C 1.31882 * 121.72556 * 0.49011 * 21 20 19 23 23 C 1.50708 * 109.46876 * 299.99593 * 9 7 2 24 24 C 1.34515 * 125.78621 * 99.99938 * 23 9 7 25 25 C 1.41386 * 106.83729 * 180.02562 * 24 23 9 26 26 C 1.34506 * 106.84024 * 0.02562 * 25 24 23 27 27 O 1.34294 * 125.79032 * 279.69461 * 23 9 7 28 28 H 0.96996 * 119.99569 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46982 * 60.00009 * 14 12 11 30 30 H 1.09001 * 109.46790 * 299.99860 * 14 12 11 31 31 H 1.08995 * 109.47078 * 59.99994 * 15 14 12 32 32 H 1.09001 * 109.47331 * 299.99602 * 15 14 12 33 33 H 1.09008 * 109.47427 * 59.99953 * 16 15 14 34 34 H 1.08998 * 109.47562 * 299.99860 * 16 15 14 35 35 H 1.07998 * 120.79161 * 359.96013 * 18 17 16 36 36 H 1.08002 * 120.41548 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.62066 * 179.74470 * 20 19 18 38 38 H 1.07993 * 119.62126 * 179.75488 * 22 21 20 39 39 H 1.08003 * 126.58034 * 0.03976 * 24 23 9 40 40 H 1.08003 * 126.57370 * 179.97438 * 25 24 23 41 41 H 1.08003 * 125.79152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 2.1945 -3.6028 0.0005 12 6 1.8033 -4.7391 -0.5974 13 8 0.7084 -4.8092 -1.1036 14 6 2.7295 -5.9272 -0.6374 15 6 2.0453 -7.0828 -1.3703 16 6 2.9859 -8.2888 -1.4114 17 6 2.3117 -9.4274 -2.1327 18 6 2.4505 -9.5693 -3.5052 19 6 1.8129 -10.6320 -4.1264 20 6 1.0610 -11.5055 -3.3634 21 7 0.9550 -11.3423 -2.0592 22 6 1.5479 -10.3434 -1.4348 23 6 0.3842 -2.5788 1.2308 24 6 -0.9359 -2.3256 1.2806 25 6 -1.3399 -2.5196 2.6216 26 6 -0.2423 -2.8791 3.3110 27 8 0.7977 -2.9200 2.4621 28 1 -0.4849 0.8400 -0.0004 29 1 2.9703 -6.2346 0.3803 30 1 3.6460 -5.6559 -1.1614 31 1 1.8042 -6.7757 -2.3879 32 1 1.1290 -7.3540 -0.8458 33 1 3.2274 -8.5961 -0.3938 34 1 3.9019 -8.0175 -1.9361 35 1 3.0410 -8.8684 -4.0766 36 1 1.8988 -10.7729 -5.1937 37 1 0.5577 -12.3336 -3.8403 38 1 1.4350 -10.2398 -0.3658 39 1 -1.5664 -2.0309 0.4547 40 1 -2.3380 -2.4009 3.0166 41 1 -0.2048 -3.1031 4.3669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:05 Heat of formation + Delta-G solvation = -69.029539 kcal Electronic energy + Delta-G solvation = -24990.571608 eV Core-core repulsion = 21222.136926 eV Total energy + Delta-G solvation = -3768.434682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.18655 -41.31673 -40.99766 -37.75267 -36.24336 -35.28694 -33.55947 -33.27963 -32.43729 -31.50910 -28.82161 -28.21939 -25.32712 -24.46124 -24.12666 -22.49414 -22.20513 -21.60399 -20.97416 -19.08696 -18.47593 -18.21709 -17.90663 -17.48372 -17.19080 -16.99203 -16.58138 -16.32778 -15.85048 -15.56477 -14.96688 -14.76927 -14.63773 -14.25921 -13.94942 -13.90030 -13.52960 -13.52392 -13.42098 -13.18576 -13.06626 -12.91395 -12.78688 -12.62454 -12.22225 -12.18186 -12.01411 -11.66716 -11.41241 -11.31863 -10.80779 -10.68444 -10.53145 -10.35110 -9.85052 -9.12904 -8.24581 -6.53537 0.20225 0.38528 1.09122 1.33060 1.39408 1.43911 1.50852 1.89623 2.12569 2.40474 2.42054 2.89778 3.00775 3.56563 3.74256 3.83744 3.92786 4.10006 4.11334 4.19099 4.23450 4.27611 4.38603 4.46171 4.57069 4.59405 4.64866 4.72688 4.79907 4.86391 4.99106 5.10345 5.14473 5.24005 5.31421 5.35706 5.42202 5.45473 5.45890 5.68073 5.83067 5.84347 5.98007 6.47736 6.58188 6.94139 7.06257 7.19023 8.72267 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002734 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.377904 B =10239.575212 C =11049.344932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.023 3.977 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.301 3.699 10 H 0.040 0.960 11 O -0.359 6.359 12 C 0.440 3.560 13 O -0.554 6.554 14 C -0.102 4.102 15 C -0.095 4.095 16 C -0.066 4.066 17 C -0.136 4.136 18 C -0.083 4.083 19 C -0.171 4.171 20 C 0.074 3.926 21 N -0.517 5.517 22 C 0.081 3.919 23 C -0.003 4.003 24 C -0.195 4.195 25 C -0.229 4.229 26 C -0.069 4.069 27 O -0.193 6.193 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.162 0.838 39 H 0.120 0.880 40 H 0.165 0.835 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -16.890 -2.578 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.094 0.906 9 C 0.246 3.754 10 H 0.057 0.943 11 O -0.276 6.276 12 C 0.286 3.714 13 O -0.445 6.445 14 C -0.139 4.139 15 C -0.133 4.133 16 C -0.104 4.104 17 C -0.138 4.138 18 C -0.108 4.108 19 C -0.190 4.190 20 C -0.083 4.083 21 N -0.226 5.226 22 C -0.075 4.075 23 C -0.053 4.053 24 C -0.215 4.215 25 C -0.248 4.248 26 C -0.136 4.136 27 O -0.090 6.090 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.172 0.828 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.179 0.821 39 H 0.138 0.862 40 H 0.182 0.818 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.752 -17.432 -2.170 18.484 hybrid contribution -0.258 1.849 -0.625 1.969 sum 5.494 -15.583 -2.795 16.757 Atomic orbital electron populations 1.70167 1.07285 1.28531 1.46723 1.25860 0.96031 1.02911 0.93248 0.85258 0.78156 0.76797 0.79392 1.18561 1.20336 1.19351 1.21146 0.94222 0.88767 1.55287 0.90596 1.18700 0.85712 0.82929 0.88012 0.94260 1.86536 1.47899 1.22753 1.70386 1.24969 0.87534 0.85423 0.73516 1.90600 1.24894 1.83808 1.45228 1.21554 0.97930 0.88274 1.06101 1.21314 0.98440 0.93108 1.00434 1.20527 0.97701 0.90127 1.02010 1.21070 0.99407 0.98045 0.95310 1.21923 0.97503 0.97307 0.94103 1.22479 0.98123 0.95597 1.02806 1.23203 0.96369 0.99341 0.89357 1.67669 1.20872 1.21881 1.12176 1.22967 0.93150 0.90231 1.01166 1.23345 0.94440 1.02274 0.85257 1.21281 0.94699 1.07249 0.98255 1.22044 1.01067 1.08277 0.93403 1.24685 0.84588 1.07135 0.97142 1.83956 1.38238 1.68803 1.18039 0.92070 0.85404 0.84913 0.92338 0.92848 0.88489 0.88138 0.82796 0.82149 0.80964 0.82075 0.86234 0.81754 0.74290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.79 10.95 21.45 0.23 -50.55 16 2 C 0.02 1.24 5.30 84.66 0.45 1.69 16 3 Si 0.98 42.74 29.54 68.60 2.03 44.77 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.56 -31.55 8.89 25.60 0.23 -31.32 16 8 H 0.08 4.16 7.81 -2.91 -0.02 4.14 16 9 C 0.30 16.61 2.42 29.10 0.07 16.68 16 10 H 0.04 2.42 7.15 -2.39 -0.02 2.40 16 11 O -0.36 -17.18 9.85 -49.45 -0.49 -17.67 16 12 C 0.44 17.84 7.92 71.24 0.56 18.40 16 13 O -0.55 -26.41 15.20 21.96 0.33 -26.07 16 14 C -0.10 -2.48 5.81 29.85 0.17 -2.31 16 15 C -0.10 -2.13 4.49 30.59 0.14 -1.99 16 16 C -0.07 -0.97 5.37 29.85 0.16 -0.81 16 17 C -0.14 -2.45 5.15 -19.77 -0.10 -2.55 16 18 C -0.08 -1.32 9.86 22.47 0.22 -1.10 16 19 C -0.17 -2.55 10.11 22.36 0.23 -2.32 16 20 C 0.07 1.33 11.18 84.68 0.95 2.27 16 21 N -0.52 -11.93 10.36 -195.85 -2.03 -13.96 16 22 C 0.08 1.69 10.86 84.67 0.92 2.61 16 23 C 0.00 -0.14 5.53 24.84 0.14 0.00 16 24 C -0.20 -10.05 9.17 22.19 0.20 -9.84 16 25 C -0.23 -9.55 10.91 22.19 0.24 -9.31 16 26 C -0.07 -2.68 12.09 66.97 0.81 -1.88 16 27 O -0.19 -9.39 10.65 -1.15 -0.01 -9.41 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 32 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.10 1.12 8.09 -2.38 -0.02 1.10 16 34 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.12 6.52 7.87 -2.91 -0.02 6.50 16 40 H 0.16 5.57 8.06 -2.91 -0.02 5.54 16 41 H 0.24 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -76.43 361.09 6.48 -69.95 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.03 Total: 24.70 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 5.39 Total: -21.76 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.79 Total: -64.51 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.17 Total: -53.14 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -76.43 6.48 -69.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.916 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds