Wall clock time and date at job start Tue Mar 31 2020 11:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48502 * 109.47230 * 263.60244 * 3 2 1 5 5 H 1.48500 * 109.47021 * 23.60762 * 3 2 1 6 6 H 1.48503 * 109.47330 * 143.60375 * 3 2 1 7 7 C 1.37883 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99702 * 352.37846 * 7 2 1 9 9 C 1.50697 * 119.99743 * 172.37064 * 7 2 1 10 10 H 1.09003 * 109.47573 * 354.38716 * 9 7 2 11 11 C 1.50697 * 109.47367 * 234.38345 * 9 7 2 12 12 O 1.21281 * 119.99822 * 261.83403 * 11 9 7 13 13 N 1.34777 * 120.00012 * 81.82938 * 11 9 7 14 14 C 1.46505 * 120.00054 * 179.97438 * 13 11 9 15 15 H 1.09002 * 110.86714 * 328.82587 * 14 13 11 16 16 C 1.54571 * 111.01174 * 92.66480 * 14 13 11 17 17 C 1.51110 * 104.84636 * 143.16232 * 16 14 13 18 18 C 1.32968 * 110.78242 * 343.42353 * 17 16 14 19 19 C 1.46952 * 124.77568 * 179.97438 * 18 17 16 20 20 O 1.21533 * 120.00000 * 0.02597 * 19 18 17 21 21 O 1.34800 * 120.00059 * 180.02562 * 19 18 17 22 22 C 1.51106 * 110.59855 * 359.95465 * 18 17 16 23 23 C 1.50706 * 109.46868 * 114.38506 * 9 7 2 24 24 C 1.38234 * 119.99797 * 52.61707 * 23 9 7 25 25 C 1.38241 * 119.99798 * 179.81241 * 24 23 9 26 26 C 1.38233 * 119.99639 * 0.39516 * 25 24 23 27 27 C 1.38233 * 120.00389 * 359.85713 * 26 25 24 28 28 C 1.38231 * 119.99970 * 359.95814 * 27 26 25 29 29 H 0.96998 * 119.99800 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00079 * 0.02562 * 13 11 9 31 31 H 1.09000 * 110.36801 * 262.00927 * 16 14 13 32 32 H 1.09004 * 110.36233 * 24.20906 * 16 14 13 33 33 H 1.07998 * 124.62717 * 163.40144 * 17 16 14 34 34 H 0.96701 * 116.99715 * 180.02562 * 21 19 18 35 35 H 1.08999 * 110.36383 * 257.76437 * 22 18 17 36 36 H 1.09002 * 110.37032 * 135.54977 * 22 18 17 37 37 H 1.07994 * 120.00070 * 359.97438 * 24 23 9 38 38 H 1.07997 * 119.99537 * 180.22415 * 25 24 23 39 39 H 1.08005 * 119.99540 * 179.83234 * 26 25 24 40 40 H 1.08000 * 119.99802 * 179.97438 * 27 26 25 41 41 H 1.08000 * 120.00073 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6318 1.9684 -1.3914 5 1 1.3856 2.6878 0.5607 6 1 3.4727 1.4829 0.8308 7 6 2.0046 -1.1941 -0.0005 8 1 1.4717 -2.1253 0.1231 9 6 3.5015 -1.1998 -0.1738 10 1 3.8470 -0.1872 -0.3827 11 6 3.8710 -2.1034 -1.3218 12 8 4.2368 -3.2394 -1.1059 13 7 3.7948 -1.6492 -2.5885 14 6 4.1545 -2.5275 -3.7045 15 1 4.9296 -3.2343 -3.4081 16 6 2.9117 -3.2661 -4.2513 17 6 3.1263 -3.3312 -5.7457 18 6 4.0615 -2.4659 -6.1261 19 6 4.5126 -2.2746 -7.5116 20 8 4.0219 -2.9339 -8.4069 21 8 5.4706 -1.3679 -7.7894 22 6 4.5973 -1.7047 -4.9359 23 6 4.1516 -1.7017 1.0898 24 6 3.7529 -2.9049 1.6413 25 6 4.3518 -3.3672 2.7982 26 6 5.3437 -2.6222 3.4082 27 6 5.7387 -1.4164 2.8596 28 6 5.1425 -0.9560 1.7006 29 1 -0.4850 0.8400 0.0004 30 1 3.5025 -0.7405 -2.7611 31 1 2.8526 -4.2707 -3.8324 32 1 2.0055 -2.7059 -4.0206 33 1 2.5931 -3.9910 -6.4141 34 1 5.7341 -1.2774 -8.7154 35 1 4.1649 -0.7048 -4.8993 36 1 5.6847 -1.6456 -4.9815 37 1 2.9753 -3.4851 1.1668 38 1 4.0428 -4.3090 3.2270 39 1 5.8098 -2.9821 4.3136 40 1 6.5134 -0.8343 3.3364 41 1 5.4514 -0.0142 1.2718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:42 Heat of formation + Delta-G solvation = -111.888251 kcal Electronic energy + Delta-G solvation = -25549.859302 eV Core-core repulsion = 21779.566128 eV Total energy + Delta-G solvation = -3770.293175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = -0.34 seconds Orbital eigenvalues (eV) -41.48752 -40.93245 -39.76949 -38.70280 -37.07428 -35.47593 -34.67034 -33.33629 -31.59712 -30.18309 -29.70479 -28.78868 -25.54502 -24.47123 -23.35117 -22.96323 -21.74629 -21.06712 -19.87568 -19.09837 -18.88854 -18.09054 -17.92563 -17.59264 -17.14942 -16.55681 -16.36040 -15.82517 -15.48116 -15.29197 -15.13200 -14.78041 -14.51491 -14.17198 -13.96148 -13.84615 -13.70557 -13.61771 -13.38935 -13.04662 -12.87654 -12.79016 -12.72016 -12.59202 -12.34941 -12.04854 -11.88503 -11.76413 -11.67182 -11.40011 -10.88333 -10.55310 -10.15560 -9.95391 -9.61259 -9.35079 -8.33904 -6.41743 0.01968 0.66197 0.73114 1.34536 1.42941 1.50850 1.86406 1.90351 2.10343 2.31997 2.37799 3.01520 3.17934 3.47425 3.56621 4.03142 4.08327 4.11426 4.15433 4.25371 4.31760 4.43710 4.44919 4.51196 4.52202 4.67212 4.79360 4.85192 4.86112 4.91881 5.03874 5.21120 5.23306 5.33706 5.35845 5.41447 5.54462 5.66909 5.72692 5.77745 5.97420 6.21872 6.33608 6.61310 6.70489 6.96789 7.22120 7.47306 8.81228 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.003795 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.959647 B = 7376.911141 C = 8310.187273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.032 3.968 3 Si 0.925 3.075 4 H -0.240 1.240 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.503 4.503 8 H 0.031 0.969 9 C 0.035 3.965 10 H 0.074 0.926 11 C 0.532 3.468 12 O -0.583 6.583 13 N -0.715 5.715 14 C 0.141 3.859 15 H 0.093 0.907 16 C -0.124 4.124 17 C -0.028 4.028 18 C -0.192 4.192 19 C 0.546 3.454 20 O -0.552 6.552 21 O -0.503 6.503 22 C -0.075 4.075 23 C -0.063 4.063 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.146 4.146 29 H 0.271 0.729 30 H 0.408 0.592 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.432 0.568 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.669 0.867 -7.919 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.163 1.163 5 H -0.216 1.216 6 H -0.168 1.168 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.013 3.987 10 H 0.092 0.908 11 C 0.321 3.679 12 O -0.463 6.463 13 N -0.366 5.366 14 C 0.035 3.965 15 H 0.111 0.889 16 C -0.162 4.162 17 C -0.047 4.047 18 C -0.194 4.194 19 C 0.392 3.608 20 O -0.445 6.445 21 O -0.316 6.316 22 C -0.113 4.113 23 C -0.064 4.064 24 C -0.118 4.118 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.143 4.143 28 C -0.164 4.164 29 H 0.080 0.920 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.294 0.706 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.538 -0.019 -7.605 14.664 hybrid contribution -0.727 0.832 -0.729 1.323 sum 11.811 0.813 -8.334 14.478 Atomic orbital electron populations 1.70020 1.08319 1.28619 1.49915 1.25871 0.95378 1.02547 0.93040 0.86044 0.79675 0.78391 0.81134 1.16321 1.21649 1.16810 1.20451 0.88573 0.93700 1.51346 0.95076 1.18267 0.95903 0.95658 0.88834 0.90816 1.21281 0.73648 0.88137 0.84808 1.90555 1.49006 1.21160 1.85562 1.45853 1.68815 1.17003 1.04904 1.21713 0.96314 0.92566 0.85864 0.88931 1.21962 0.99937 1.02602 0.91741 1.24310 0.91383 0.92569 0.96440 1.20868 1.03478 1.03873 0.91167 1.20426 0.75900 0.75793 0.88632 1.90903 1.57084 1.47623 1.48903 1.84588 1.52632 1.56054 1.38340 1.21295 1.02776 0.98791 0.88401 1.20053 0.94535 0.94642 0.97127 1.20857 0.98893 0.96103 0.95988 1.21353 0.97764 1.00742 0.95650 1.21354 0.97775 0.95278 1.00856 1.21366 1.00447 0.96868 0.95649 1.21279 0.97054 1.00296 0.97747 0.92002 0.75596 0.89781 0.89001 0.82773 0.70629 0.88487 0.88394 0.89422 0.85071 0.83334 0.83299 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.96 21.45 0.30 -53.26 16 2 C 0.03 1.67 5.47 84.66 0.46 2.13 16 3 Si 0.93 38.07 26.84 68.60 1.84 39.91 16 4 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.24 -9.41 6.96 99.48 0.69 -8.71 16 7 C -0.50 -26.60 8.24 25.60 0.21 -26.39 16 8 H 0.03 1.92 7.72 -2.91 -0.02 1.90 16 9 C 0.04 1.55 2.20 -13.03 -0.03 1.52 16 10 H 0.07 2.96 4.73 -2.39 -0.01 2.95 16 11 C 0.53 22.30 6.94 87.66 0.61 22.91 16 12 O -0.58 -27.28 14.84 -3.03 -0.05 -27.32 16 13 N -0.71 -23.63 5.15 -437.46 -2.25 -25.88 16 14 C 0.14 3.86 3.51 46.06 0.16 4.02 16 15 H 0.09 2.76 7.54 -2.39 -0.02 2.75 16 16 C -0.12 -3.28 6.53 30.51 0.20 -3.08 16 17 C -0.03 -0.63 10.45 24.65 0.26 -0.37 16 18 C -0.19 -4.18 6.10 -18.62 -0.11 -4.29 16 19 C 0.55 11.80 8.31 70.10 0.58 12.38 16 20 O -0.55 -15.02 17.57 19.73 0.35 -14.67 16 21 O -0.50 -7.63 13.25 -57.12 -0.76 -8.39 16 22 C -0.08 -1.57 6.28 30.51 0.19 -1.38 16 23 C -0.06 -2.71 4.52 -19.86 -0.09 -2.80 16 24 C -0.10 -4.39 8.04 22.27 0.18 -4.21 16 25 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 26 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 27 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 28 C -0.15 -5.32 9.67 22.27 0.22 -5.10 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.41 12.17 8.43 -92.71 -0.78 11.39 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.67 8.08 -2.38 -0.02 2.65 16 33 H 0.15 3.03 8.04 -2.91 -0.02 3.01 16 34 H 0.43 2.50 9.11 -74.06 -0.67 1.83 16 35 H 0.10 1.87 7.80 -2.39 -0.02 1.85 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 4.29 7.46 -2.91 -0.02 4.27 16 38 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.13 4.07 7.96 -2.91 -0.02 4.05 16 Total: -1.00 -72.06 354.83 2.55 -69.51 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.39 Total: 36.92 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 3.51 Total: -16.80 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -1.95 Total: -79.15 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.46 Total: -50.39 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.84 Total: 39.91 kcal Total: -72.06 2.55 -69.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.381 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.34 seconds