Wall clock time and date at job start Tue Mar 31 2020 11:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48501 * 109.47161 * 274.76897 * 3 2 1 5 5 H 1.48504 * 109.47052 * 34.76414 * 3 2 1 6 6 H 1.48497 * 109.47438 * 154.76626 * 3 2 1 7 7 C 1.39931 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99934 * 339.59461 * 7 2 1 9 9 C 1.41410 * 119.99840 * 159.58433 * 7 2 1 10 10 C 1.40768 * 120.21357 * 332.26178 * 9 7 2 11 11 C 1.37645 * 119.88772 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31820 * 0.02562 * 11 10 9 13 13 C 1.39241 * 120.43149 * 0.02562 * 12 11 10 14 14 N 1.39945 * 119.94826 * 179.97438 * 13 12 11 15 15 C 1.34772 * 119.99660 * 144.55710 * 14 13 12 16 16 O 1.21287 * 120.00848 * 4.89876 * 15 14 13 17 17 C 1.50707 * 119.99679 * 184.90086 * 15 14 13 18 18 C 1.50701 * 109.81195 * 294.28334 * 17 15 14 19 19 O 1.20819 * 119.99692 * 120.52367 * 18 17 15 20 20 O 1.34224 * 119.99770 * 300.52657 * 18 17 15 21 21 C 1.52978 * 109.47215 * 173.67511 * 17 15 14 22 22 C 1.50064 * 110.28792 * 289.54083 * 21 17 15 23 23 C 1.29439 * 124.07746 * 342.97847 * 22 21 17 24 24 C 1.50073 * 124.07740 * 0.48945 * 23 22 21 25 25 C 1.53029 * 110.14525 * 342.87196 * 24 23 22 26 26 C 1.38280 * 120.10485 * 0.22779 * 13 12 11 27 27 H 0.97000 * 120.00349 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.05876 * 359.97271 * 10 9 7 29 29 H 1.07994 * 119.84186 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.78165 * 179.97438 * 12 11 10 31 31 H 0.96991 * 119.99766 * 324.55169 * 14 13 12 32 32 H 0.96697 * 116.99779 * 179.97438 * 20 18 17 33 33 H 1.09001 * 109.17626 * 169.35175 * 21 17 15 34 34 H 1.08998 * 109.38890 * 49.86115 * 21 17 15 35 35 H 1.07994 * 117.95991 * 163.00242 * 22 21 17 36 36 H 1.07995 * 117.96227 * 180.52176 * 23 22 21 37 37 H 1.08994 * 109.35931 * 222.66642 * 24 23 22 38 38 H 1.08993 * 109.35835 * 103.07714 * 24 23 22 39 39 H 1.08998 * 109.64330 * 169.11984 * 25 24 23 40 40 H 1.09000 * 109.64526 * 289.54065 * 25 24 23 41 41 H 1.08001 * 120.16577 * 179.72668 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3890 2.1046 -1.3952 5 1 1.4937 2.6215 0.7983 6 1 3.5866 1.4133 0.5968 7 6 2.0080 -1.2118 0.0005 8 1 1.5189 -2.1176 0.3270 9 6 3.3554 -1.2503 -0.4266 10 6 3.8300 -0.3090 -1.3595 11 6 5.1431 -0.3523 -1.7702 12 6 6.0006 -1.3187 -1.2704 13 6 5.5449 -2.2570 -0.3480 14 7 6.4198 -3.2292 0.1499 15 6 6.3116 -3.6417 1.4283 16 8 5.4021 -3.2373 2.1213 17 6 7.3210 -4.6057 1.9970 18 6 7.2095 -5.9348 1.2955 19 8 8.1613 -6.3880 0.7054 20 8 6.0527 -6.6149 1.3264 21 6 7.0655 -4.7871 3.4943 22 6 7.4342 -3.5382 4.2402 23 6 8.1803 -2.5978 3.7559 24 6 8.7724 -2.6201 2.3771 25 6 8.7350 -4.0412 1.8104 26 6 4.2280 -2.2330 0.0728 27 1 -0.4851 0.8400 -0.0004 28 1 3.1651 0.4460 -1.7522 29 1 5.5063 0.3700 -2.4862 30 1 7.0291 -1.3450 -1.5990 31 1 7.1040 -3.6061 -0.4252 32 1 6.0294 -7.4626 0.8616 33 1 7.6669 -5.6185 3.8620 34 1 6.0105 -5.0072 3.6574 35 1 7.0537 -3.4166 5.2435 36 1 8.3903 -1.7443 4.3834 37 1 9.8056 -2.2761 2.4220 38 1 8.2008 -1.9571 1.7278 39 1 8.9838 -4.0192 0.7494 40 1 9.4522 -4.6666 2.3420 41 1 3.8724 -2.9630 0.7849 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:03 Heat of formation + Delta-G solvation = -89.834298 kcal Electronic energy + Delta-G solvation = -26713.634364 eV Core-core repulsion = 22944.297521 eV Total energy + Delta-G solvation = -3769.336844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.53895 -39.68194 -38.11946 -36.92585 -36.31871 -34.61772 -33.27370 -31.96303 -30.96331 -30.30126 -28.59411 -25.34716 -25.03454 -23.42400 -22.99015 -21.25695 -20.87067 -19.96234 -18.43165 -18.23014 -17.65929 -17.38463 -16.37008 -15.92716 -15.76126 -15.41112 -15.11613 -14.66557 -14.57581 -14.02428 -13.73348 -13.58650 -13.30462 -13.10813 -12.99937 -12.72108 -12.46447 -12.42604 -11.96794 -11.82428 -11.69829 -11.62984 -11.21722 -11.04919 -10.86202 -10.76076 -10.63886 -10.42935 -10.06302 -9.81680 -9.62094 -9.13155 -9.04300 -8.96699 -7.67231 -7.19781 -6.94869 -4.46100 1.79714 2.28303 2.29748 2.61551 2.67241 3.07161 3.13604 3.23660 3.30222 3.36798 4.01203 4.23248 4.35635 4.48452 4.63706 4.90842 4.97233 5.06063 5.15568 5.33047 5.40387 5.45628 5.54939 5.67727 5.82058 5.96617 5.98127 6.01057 6.19579 6.21037 6.40652 6.54914 6.60176 6.74588 6.83350 6.90254 7.14326 7.28031 7.52016 7.60092 7.62475 7.91342 7.94496 8.03941 8.36713 8.49476 8.68143 8.82517 10.07167 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.004159 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.241373 B = 6730.282849 C = 6826.947319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.439 4.439 8 H 0.091 0.909 9 C 0.102 3.898 10 C -0.251 4.251 11 C -0.063 4.063 12 C -0.267 4.267 13 C 0.161 3.839 14 N -0.666 5.666 15 C 0.524 3.476 16 O -0.484 6.484 17 C -0.071 4.071 18 C 0.495 3.505 19 O -0.505 6.505 20 O -0.501 6.501 21 C -0.065 4.065 22 C -0.139 4.139 23 C -0.158 4.158 24 C -0.097 4.097 25 C -0.096 4.096 26 C -0.197 4.197 27 H 0.285 0.715 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.399 0.601 32 H 0.413 0.587 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.539 -7.843 4.353 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.467 4.467 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.271 4.271 11 C -0.082 4.082 12 C -0.288 4.288 13 C 0.069 3.931 14 N -0.311 5.311 15 C 0.308 3.692 16 O -0.356 6.356 17 C -0.076 4.076 18 C 0.336 3.664 19 O -0.393 6.393 20 O -0.313 6.313 21 C -0.102 4.102 22 C -0.157 4.157 23 C -0.176 4.176 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.218 4.218 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.233 0.767 32 H 0.272 0.728 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.867 -7.228 4.974 17.263 hybrid contribution 0.536 0.032 -0.657 0.849 sum 15.404 -7.196 4.317 17.541 Atomic orbital electron populations 1.69712 1.08177 1.30323 1.34557 1.26168 0.94662 1.01844 0.90717 0.86299 0.81353 0.79615 0.78708 1.19632 1.21913 1.16795 1.19482 0.93918 0.96398 1.36939 0.89142 1.17606 0.92708 0.90535 0.89373 1.21044 0.96118 1.05102 1.04804 1.20354 0.93559 0.96439 0.97808 1.20033 0.98766 1.01414 1.08554 1.17479 0.89112 0.89710 0.96797 1.43428 1.35223 1.40999 1.11435 1.19613 0.85402 0.82089 0.82090 1.90793 1.31566 1.54634 1.58595 1.20964 0.98799 0.89483 0.98311 1.22846 0.80081 0.86114 0.77377 1.90726 1.38837 1.68786 1.40964 1.84608 1.37387 1.37626 1.71644 1.20305 1.04066 0.97533 0.88266 1.21768 0.98310 0.95421 1.00205 1.21957 0.99633 0.99048 0.96950 1.20543 1.01800 0.96029 0.95024 1.21587 0.91923 0.96921 1.02958 1.21073 0.90687 1.04716 1.05296 0.90426 0.88150 0.88511 0.88709 0.76691 0.72784 0.89913 0.88265 0.86996 0.87463 0.89897 0.89996 0.90059 0.89651 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.72 13.93 55.55 0.77 -20.95 16 2 C 0.09 2.29 5.38 -17.35 -0.09 2.20 16 3 Si 0.91 21.31 24.54 -169.99 -4.17 17.14 16 4 H -0.27 -6.04 6.63 56.52 0.37 -5.66 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.93 6.95 56.52 0.39 -5.54 16 7 C -0.44 -12.26 9.56 -37.74 -0.36 -12.62 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 C 0.10 2.66 5.14 -106.85 -0.55 2.11 16 10 C -0.25 -6.12 7.26 -38.84 -0.28 -6.40 16 11 C -0.06 -1.35 10.02 -39.69 -0.40 -1.74 16 12 C -0.27 -5.40 9.97 -39.10 -0.39 -5.79 16 13 C 0.16 3.40 6.28 -83.77 -0.53 2.88 16 14 N -0.67 -11.30 5.06 -9.91 -0.05 -11.35 16 15 C 0.52 8.85 4.52 -10.98 -0.05 8.80 16 16 O -0.48 -10.11 12.77 5.55 0.07 -10.04 16 17 C -0.07 -0.91 0.59 -156.61 -0.09 -1.00 16 18 C 0.49 6.11 6.89 36.01 0.25 6.36 16 19 O -0.51 -6.76 16.66 -18.74 -0.31 -7.07 16 20 O -0.50 -5.53 13.29 -39.24 -0.52 -6.05 16 21 C -0.06 -0.76 4.49 -28.20 -0.13 -0.89 16 22 C -0.14 -1.67 9.08 -35.90 -0.33 -1.99 16 23 C -0.16 -1.87 9.62 -35.90 -0.35 -2.22 16 24 C -0.10 -1.09 5.60 -28.17 -0.16 -1.25 16 25 C -0.10 -1.05 4.09 -26.51 -0.11 -1.15 16 26 C -0.20 -4.84 8.43 -38.68 -0.33 -5.17 16 27 H 0.29 6.96 8.30 -40.82 -0.34 6.62 16 28 H 0.10 2.44 4.59 -52.49 -0.24 2.20 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.40 5.57 8.25 -40.82 -0.34 5.23 16 32 H 0.41 2.51 9.10 45.56 0.41 2.92 16 33 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.10 1.30 7.66 -51.93 -0.40 0.90 16 35 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.10 7.37 -51.93 -0.38 0.72 16 39 H 0.08 0.84 7.43 -51.93 -0.39 0.45 16 40 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.12 3.03 6.25 -52.49 -0.33 2.70 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -32.10 337.46 -7.22 -39.31 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.21 Total: 11.80 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -3.88 Total: -17.89 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.72 Total: -32.30 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.76 Total: -23.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.17 Total: 17.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.10 -7.22 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.523 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds