Wall clock time and date at job start Tue Mar 31 2020 12:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33621 * 125.80739 * 2 1 4 4 C 1.34219 * 110.92239 * 180.15859 * 3 2 1 5 5 C 1.50699 * 125.42671 * 179.87318 * 4 3 2 6 6 N 1.46898 * 109.47386 * 269.69153 * 5 4 3 7 7 C 1.46904 * 111.00320 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47040 * 179.97438 * 7 6 5 9 9 C 1.38634 * 119.74887 * 269.72631 * 8 7 6 10 10 C 1.37618 * 120.25163 * 179.72272 * 9 8 7 11 11 C 1.40718 * 119.73983 * 0.57178 * 10 9 8 12 12 C 1.41394 * 120.24541 * 179.68259 * 11 10 9 13 13 H 1.08005 * 119.99971 * 204.41200 * 12 11 10 14 14 C 1.39942 * 120.00114 * 24.40644 * 12 11 10 15 15 N 1.30824 * 119.99904 * 17.84456 * 14 12 11 16 16 Si 1.86803 * 120.00117 * 197.85015 * 14 12 11 17 17 H 1.48497 * 109.47418 * 59.99790 * 16 14 12 18 18 H 1.48504 * 109.47056 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46873 * 299.99451 * 16 14 12 20 20 C 1.40719 * 119.51452 * 359.70405 * 11 10 9 21 21 C 1.37616 * 119.74133 * 359.97438 * 20 11 10 22 22 C 1.34153 * 109.14858 * 359.60335 * 4 3 2 23 23 C 1.36498 * 125.80678 * 179.72596 * 2 1 3 24 24 C 1.47231 * 127.20388 * 359.97438 * 23 2 1 25 25 O 1.21538 * 119.99973 * 359.97438 * 24 23 2 26 26 O 1.34770 * 119.99973 * 179.97438 * 24 23 2 27 27 H 1.08998 * 109.47087 * 270.26872 * 1 2 3 28 28 H 1.08996 * 109.47429 * 30.27394 * 1 2 3 29 29 H 1.09007 * 109.46990 * 150.26806 * 1 2 3 30 30 H 1.09000 * 109.47145 * 149.69055 * 5 4 3 31 31 H 1.09002 * 109.47122 * 29.69161 * 5 4 3 32 32 H 1.00905 * 111.00058 * 303.95220 * 6 5 4 33 33 H 1.08991 * 109.46702 * 299.99969 * 7 6 5 34 34 H 1.08996 * 109.46767 * 59.99828 * 7 6 5 35 35 H 1.08005 * 119.87386 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.13270 * 180.28016 * 10 9 8 37 37 H 0.96998 * 119.99988 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.13068 * 179.97438 * 20 11 10 39 39 H 1.08002 * 119.87926 * 179.97438 * 21 20 11 40 40 H 1.07998 * 127.02888 * 180.24573 * 22 4 3 41 41 H 0.96700 * 117.00039 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7389 -0.0035 5 6 4.7456 1.7013 -0.0072 6 7 5.1233 2.0075 -1.3934 7 6 6.2530 2.9456 -1.4363 8 6 6.6115 3.2349 -2.8711 9 6 7.5484 2.4446 -3.5188 10 6 7.8794 2.6959 -4.8307 11 6 7.2717 3.7674 -5.5110 12 6 7.6087 4.0394 -6.8570 13 1 7.4760 5.0340 -7.2565 14 6 8.1145 3.0199 -7.6714 15 7 7.9561 1.7679 -7.3265 16 14 9.0158 3.4468 -9.2510 17 1 10.2061 4.2758 -8.9332 18 1 9.4483 2.1974 -9.9272 19 1 8.1088 4.2063 -10.1486 20 6 6.3263 4.5665 -4.8418 21 6 6.0058 4.2925 -3.5318 22 6 3.6857 -0.5989 0.0029 23 6 2.3056 -1.1070 0.0053 24 6 1.8754 -2.5150 0.0126 25 8 0.6912 -2.7886 0.0148 26 8 2.7947 -3.5005 0.0167 27 1 -0.3633 0.0048 1.0276 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5097 30 1 5.5932 1.2508 0.5092 31 1 4.4565 2.6206 0.5021 32 1 5.3337 1.1640 -1.9057 33 1 5.9739 3.8734 -0.9370 34 1 7.1111 2.5042 -0.9296 35 1 8.0174 1.6260 -2.9930 36 1 8.6062 2.0762 -5.3348 37 1 8.3069 1.0613 -7.8908 38 1 5.8541 5.3916 -5.3542 39 1 5.2808 4.9047 -3.0159 40 1 4.5938 -1.1834 0.0059 41 1 2.4641 -4.4092 0.0218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600852320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:05 Heat of formation + Delta-G solvation = -66.263025 kcal Electronic energy + Delta-G solvation = -24328.122655 eV Core-core repulsion = 20559.807938 eV Total energy + Delta-G solvation = -3768.314717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82249 -40.04547 -37.84675 -36.32474 -35.95300 -33.75694 -33.29386 -32.26258 -30.36645 -29.27753 -28.32154 -26.32175 -24.88769 -23.70576 -22.73438 -21.76282 -21.00994 -19.95666 -19.59561 -18.29618 -17.30480 -17.18895 -16.70182 -15.79549 -15.58988 -15.52353 -15.10583 -14.69090 -14.41233 -14.06639 -13.74144 -13.63185 -13.30061 -13.19147 -13.17863 -13.08502 -12.51623 -12.33923 -11.94911 -11.80219 -11.73322 -11.65078 -11.47579 -11.07685 -10.97043 -10.83579 -10.59202 -10.37418 -10.04214 -9.61307 -9.40443 -9.15751 -8.73644 -8.18756 -7.46541 -7.31433 -6.77834 -4.36468 0.94137 1.75899 2.43702 2.73618 2.85420 2.93297 3.05087 3.07402 3.08542 3.18664 3.91587 4.17964 4.44462 4.53752 4.80514 4.91146 4.98569 5.19052 5.20969 5.27287 5.38474 5.47683 5.67743 5.73100 5.77661 5.84244 5.84656 6.13096 6.22935 6.25146 6.34047 6.40643 6.88215 6.93686 7.06221 7.21020 7.25832 7.36848 7.57548 7.62196 7.69982 7.87236 8.04203 8.11968 8.29499 8.62721 8.88350 8.96687 10.16545 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.002403 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.173530 B =11648.243701 C =12377.973796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 O -0.158 6.158 4 C 0.007 3.993 5 C 0.132 3.868 6 N -0.682 5.682 7 C 0.126 3.874 8 C -0.218 4.218 9 C -0.094 4.094 10 C -0.167 4.167 11 C 0.113 3.887 12 C -0.462 4.462 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.229 4.229 21 C -0.066 4.066 22 C -0.165 4.165 23 C -0.241 4.241 24 C 0.562 3.438 25 O -0.523 6.523 26 O -0.508 6.508 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.346 0.654 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.281 0.719 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.161 0.839 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -6.671 14.445 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 O -0.053 6.053 4 C -0.042 4.042 5 C 0.004 3.996 6 N -0.315 5.315 7 C -0.001 4.001 8 C -0.220 4.220 9 C -0.113 4.113 10 C -0.186 4.186 11 C 0.111 3.889 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.417 5.417 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.249 4.249 21 C -0.085 4.085 22 C -0.185 4.185 23 C -0.244 4.244 24 C 0.409 3.591 25 O -0.415 6.415 26 O -0.320 6.320 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.179 0.821 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -8.612 -5.779 14.295 17.661 hybrid contribution 0.994 -1.383 -0.595 1.804 sum -7.618 -7.162 13.700 17.234 Atomic orbital electron populations 1.20679 0.83577 1.05512 1.04511 1.22813 0.94072 0.83047 0.95779 1.83784 1.16922 1.34224 1.70381 1.22283 0.82327 0.94440 1.05127 1.20417 0.89928 0.96474 0.92831 1.60697 1.42018 1.18764 1.10008 1.20579 0.89230 0.94697 0.95571 1.18831 1.06054 1.02251 0.94845 1.20520 0.97888 0.97636 0.95233 1.21273 1.02985 1.01541 0.92844 1.17631 0.88245 0.90409 0.92646 1.19585 1.37432 0.96806 0.95365 0.90478 1.25916 0.94018 0.94399 0.99862 1.69821 1.34276 1.00187 1.37374 0.86377 0.80583 0.78825 0.80997 1.18817 1.20343 1.18993 1.20979 1.03647 1.04769 0.95490 1.20337 0.97472 0.96293 0.94431 1.22603 0.96559 0.93212 1.06112 1.20014 0.94214 0.90282 1.19874 1.19626 0.82848 0.85207 0.71468 1.90866 1.18280 1.84499 1.47813 1.84596 1.41959 1.19583 1.85821 0.89055 0.89660 0.87447 0.91999 0.89232 0.83468 0.91698 0.95868 0.89876 0.86526 0.90820 0.89083 0.89437 0.82129 0.72869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.89 36.01 0.36 -0.42 16 2 C 0.10 1.17 7.38 -34.94 -0.26 0.91 16 3 O -0.16 -2.10 10.52 7.72 0.08 -2.02 16 4 C 0.01 0.09 6.79 -35.75 -0.24 -0.15 16 5 C 0.13 1.58 6.20 -4.98 -0.03 1.55 16 6 N -0.68 -10.49 6.48 -116.34 -0.75 -11.24 16 7 C 0.13 2.07 5.80 -4.97 -0.03 2.04 16 8 C -0.22 -4.57 5.41 -104.33 -0.56 -5.13 16 9 C -0.09 -2.11 9.67 -39.66 -0.38 -2.49 16 10 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 11 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 12 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 13 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 14 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.37 10.95 55.55 0.61 -19.76 16 16 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 21 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 22 C -0.16 -2.01 10.93 -37.44 -0.41 -2.42 16 23 C -0.24 -3.04 6.32 -103.29 -0.65 -3.69 16 24 C 0.56 6.70 8.33 34.38 0.29 6.98 16 25 O -0.52 -6.92 15.64 -19.30 -0.30 -7.22 16 26 O -0.51 -4.72 13.34 -40.68 -0.54 -5.26 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.02 6.49 -51.93 -0.34 0.69 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.35 5.53 8.72 -39.29 -0.34 5.18 16 33 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.41 1.79 9.11 45.56 0.42 2.21 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -30.38 360.13 -8.93 -39.31 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.36 Total: 10.91 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -4.06 Total: -23.67 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: -0.15 Total: -31.00 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.76 Total: -14.50 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.38 -8.93 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600852320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.958 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds