Wall clock time and date at job start Tue Mar 31 2020 12:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33621 * 125.80739 * 2 1 4 4 C 1.34219 * 110.92239 * 180.15859 * 3 2 1 5 5 C 1.50699 * 125.42671 * 179.87318 * 4 3 2 6 6 N 1.46898 * 109.47386 * 269.69153 * 5 4 3 7 7 C 1.46904 * 111.00320 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47040 * 179.97438 * 7 6 5 9 9 C 1.38634 * 119.74887 * 269.72631 * 8 7 6 10 10 C 1.37618 * 120.25163 * 179.72272 * 9 8 7 11 11 C 1.40718 * 119.73983 * 0.57178 * 10 9 8 12 12 C 1.41394 * 120.24541 * 179.68259 * 11 10 9 13 13 H 1.08005 * 119.99971 * 204.41200 * 12 11 10 14 14 C 1.39942 * 120.00114 * 24.40644 * 12 11 10 15 15 N 1.30824 * 119.99904 * 17.84456 * 14 12 11 16 16 Si 1.86803 * 120.00117 * 197.85015 * 14 12 11 17 17 H 1.48497 * 109.47418 * 59.99790 * 16 14 12 18 18 H 1.48504 * 109.47056 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46873 * 299.99451 * 16 14 12 20 20 C 1.40719 * 119.51452 * 359.70405 * 11 10 9 21 21 C 1.37616 * 119.74133 * 359.97438 * 20 11 10 22 22 C 1.34153 * 109.14858 * 359.60335 * 4 3 2 23 23 C 1.36498 * 125.80678 * 179.72596 * 2 1 3 24 24 C 1.47231 * 127.20388 * 359.97438 * 23 2 1 25 25 O 1.21538 * 119.99973 * 359.97438 * 24 23 2 26 26 O 1.34770 * 119.99973 * 179.97438 * 24 23 2 27 27 H 1.08998 * 109.47087 * 270.26872 * 1 2 3 28 28 H 1.08996 * 109.47429 * 30.27394 * 1 2 3 29 29 H 1.09007 * 109.46990 * 150.26806 * 1 2 3 30 30 H 1.09000 * 109.47145 * 149.69055 * 5 4 3 31 31 H 1.09002 * 109.47122 * 29.69161 * 5 4 3 32 32 H 1.00905 * 111.00058 * 303.95220 * 6 5 4 33 33 H 1.08991 * 109.46702 * 299.99969 * 7 6 5 34 34 H 1.08996 * 109.46767 * 59.99828 * 7 6 5 35 35 H 1.08005 * 119.87386 * 359.97438 * 9 8 7 36 36 H 1.07999 * 120.13270 * 180.28016 * 10 9 8 37 37 H 0.96998 * 119.99988 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.13068 * 179.97438 * 20 11 10 39 39 H 1.08002 * 119.87926 * 179.97438 * 21 20 11 40 40 H 1.07998 * 127.02888 * 180.24573 * 22 4 3 41 41 H 0.96700 * 117.00039 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7389 -0.0035 5 6 4.7456 1.7013 -0.0072 6 7 5.1233 2.0075 -1.3934 7 6 6.2530 2.9456 -1.4363 8 6 6.6115 3.2349 -2.8711 9 6 7.5484 2.4446 -3.5188 10 6 7.8794 2.6959 -4.8307 11 6 7.2717 3.7674 -5.5110 12 6 7.6087 4.0394 -6.8570 13 1 7.4760 5.0340 -7.2565 14 6 8.1145 3.0199 -7.6714 15 7 7.9561 1.7679 -7.3265 16 14 9.0158 3.4468 -9.2510 17 1 10.2061 4.2758 -8.9332 18 1 9.4483 2.1974 -9.9272 19 1 8.1088 4.2063 -10.1486 20 6 6.3263 4.5665 -4.8418 21 6 6.0058 4.2925 -3.5318 22 6 3.6857 -0.5989 0.0029 23 6 2.3056 -1.1070 0.0053 24 6 1.8754 -2.5150 0.0126 25 8 0.6912 -2.7886 0.0148 26 8 2.7947 -3.5005 0.0167 27 1 -0.3633 0.0048 1.0276 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5097 30 1 5.5932 1.2508 0.5092 31 1 4.4565 2.6206 0.5021 32 1 5.3337 1.1640 -1.9057 33 1 5.9739 3.8734 -0.9370 34 1 7.1111 2.5042 -0.9296 35 1 8.0174 1.6260 -2.9930 36 1 8.6062 2.0762 -5.3348 37 1 8.3069 1.0613 -7.8908 38 1 5.8541 5.3916 -5.3542 39 1 5.2808 4.9047 -3.0159 40 1 4.5938 -1.1834 0.0059 41 1 2.4641 -4.4092 0.0218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600852320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:03 Heat of formation + Delta-G solvation = -84.926871 kcal Electronic energy + Delta-G solvation = -24328.931980 eV Core-core repulsion = 20559.807938 eV Total energy + Delta-G solvation = -3769.124042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.73914 -40.90917 -39.57031 -37.30904 -37.09389 -35.48581 -34.20351 -33.35996 -31.85971 -31.10746 -29.52539 -27.72298 -26.02754 -24.85860 -23.98375 -22.85621 -22.67219 -21.63918 -20.52699 -19.20015 -19.16139 -18.16340 -17.63389 -17.18762 -16.67982 -16.47576 -16.40955 -16.04812 -15.65333 -15.50834 -15.15756 -14.96364 -14.50029 -14.22567 -14.07164 -13.98083 -13.85822 -13.76755 -13.36962 -13.26551 -13.05462 -12.79762 -12.63279 -12.62175 -12.45846 -12.32080 -12.03386 -11.74052 -11.39018 -11.23817 -11.01178 -10.95852 -9.70637 -9.36284 -9.26297 -9.15139 -8.62566 -6.31772 0.04427 0.79298 1.00794 1.19305 1.37743 1.48611 1.53381 1.59109 1.95146 2.15170 2.21072 2.71220 3.29638 3.51995 3.66302 3.85546 4.05462 4.15349 4.28406 4.34177 4.43039 4.47340 4.56271 4.57582 4.62836 4.67500 4.72208 4.86161 4.90054 5.07896 5.09933 5.17805 5.24717 5.40937 5.50711 5.53107 5.73930 5.94269 5.97227 6.11655 6.14038 6.24959 6.42121 6.44147 6.73349 6.95950 6.96553 7.07093 8.34037 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.002403 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.173530 B =11648.243701 C =12377.973796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.094 3.906 3 O -0.171 6.171 4 C -0.008 4.008 5 C 0.138 3.862 6 N -0.697 5.697 7 C 0.133 3.867 8 C -0.201 4.201 9 C -0.096 4.096 10 C -0.192 4.192 11 C 0.078 3.922 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.825 5.825 16 Si 0.981 3.019 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.261 1.261 20 C -0.248 4.248 21 C -0.072 4.072 22 C -0.164 4.164 23 C -0.265 4.265 24 C 0.565 3.435 25 O -0.542 6.542 26 O -0.505 6.505 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.341 0.659 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.287 0.713 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.175 0.825 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.083 -7.023 15.949 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 O -0.067 6.067 4 C -0.056 4.056 5 C 0.010 3.990 6 N -0.329 5.329 7 C 0.006 3.994 8 C -0.203 4.203 9 C -0.115 4.115 10 C -0.212 4.212 11 C 0.076 3.924 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.451 5.451 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.185 1.185 20 C -0.267 4.267 21 C -0.091 4.091 22 C -0.183 4.183 23 C -0.268 4.268 24 C 0.411 3.589 25 O -0.436 6.436 26 O -0.319 6.319 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.160 0.840 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.192 0.808 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -8.752 -6.150 15.823 19.099 hybrid contribution 0.943 -1.335 -0.869 1.851 sum -7.810 -7.485 14.954 18.457 Atomic orbital electron populations 1.20790 0.81738 1.05791 1.05774 1.23379 0.95198 0.82746 0.94651 1.83776 1.17362 1.34845 1.70690 1.22456 0.82397 0.94799 1.05968 1.20472 0.90402 0.97181 0.90951 1.60552 1.41390 1.18599 1.12378 1.20503 0.90569 0.96068 0.92286 1.19335 1.03679 1.00276 0.97001 1.20813 0.98034 0.98357 0.94271 1.21264 1.03658 1.01885 0.94352 1.17976 0.89441 0.91593 0.93371 1.19818 1.40084 0.97242 0.96246 0.90943 1.26737 0.94145 0.93939 1.03129 1.69875 1.35167 1.01083 1.38981 0.85280 0.79104 0.78858 0.76621 1.18460 1.19130 1.18516 1.21181 1.03776 1.04939 0.96847 1.20672 0.97782 0.96955 0.93701 1.22828 0.96938 0.93288 1.05273 1.20296 0.94723 0.90983 1.20761 1.19563 0.82755 0.85463 0.71082 1.90855 1.18994 1.84830 1.48878 1.84548 1.41418 1.20730 1.85199 0.87208 0.88300 0.88101 0.89443 0.88199 0.84040 0.90104 0.93824 0.87401 0.88324 0.90211 0.89018 0.86933 0.80802 0.70457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.89 71.24 0.70 -0.69 16 2 C 0.09 2.15 7.38 25.28 0.19 2.34 16 3 O -0.17 -4.28 10.52 4.71 0.05 -4.23 16 4 C -0.01 -0.19 6.79 24.75 0.17 -0.02 16 5 C 0.14 2.86 6.20 85.56 0.53 3.39 16 6 N -0.70 -19.43 6.48 -521.99 -3.38 -22.81 16 7 C 0.13 3.90 5.80 85.56 0.50 4.40 16 8 C -0.20 -8.06 5.41 -19.67 -0.11 -8.17 16 9 C -0.10 -4.25 9.67 22.22 0.21 -4.04 16 10 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 11 C 0.08 4.31 5.58 -21.29 -0.12 4.19 16 12 C -0.50 -27.83 9.05 23.46 0.21 -27.62 16 13 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 14 C 0.04 1.81 5.14 85.26 0.44 2.24 16 15 N -0.83 -43.76 10.95 21.83 0.24 -43.52 16 16 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 20 C -0.25 -12.41 9.80 22.73 0.22 -12.18 16 21 C -0.07 -3.14 9.67 22.22 0.21 -2.93 16 22 C -0.16 -3.69 10.93 23.65 0.26 -3.43 16 23 C -0.27 -6.35 6.32 -19.00 -0.12 -6.47 16 24 C 0.56 12.78 8.33 70.19 0.58 13.36 16 25 O -0.54 -13.85 15.64 19.71 0.31 -13.54 16 26 O -0.51 -8.53 13.34 -56.81 -0.76 -9.28 16 27 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.83 6.49 -2.38 -0.02 1.81 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.34 10.10 8.72 -89.69 -0.78 9.32 16 33 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 35 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.10 5.44 6.16 -2.91 -0.02 5.43 16 37 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 38 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.43 2.96 9.11 -74.06 -0.67 2.29 16 Total: -1.00 -67.25 360.13 2.20 -65.05 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.37 Total: 33.07 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 4.08 Total: -45.51 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -3.14 Total: -66.33 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.40 Total: -27.05 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -67.25 2.20 -65.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600852320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.877 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds