Wall clock time and date at job start Tue Mar 31 2020 11:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99597 * 2 1 4 4 H 1.48503 * 109.47120 * 239.99389 * 3 2 1 5 5 H 1.48494 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46744 * 119.99890 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00603 * 185.06298 * 7 2 1 9 9 C 1.50705 * 119.99757 * 5.06023 * 7 2 1 10 10 H 1.09001 * 109.46926 * 334.68263 * 9 7 2 11 11 C 1.50703 * 109.46912 * 214.68274 * 9 7 2 12 12 O 1.21279 * 119.99821 * 239.99941 * 11 9 7 13 13 N 1.34776 * 120.00397 * 59.99981 * 11 9 7 14 14 C 1.48135 * 127.83984 * 179.97438 * 13 11 9 15 15 C 1.54395 * 104.62149 * 219.58842 * 14 13 11 16 16 H 1.08993 * 117.61464 * 117.23100 * 15 14 13 17 17 C 1.53000 * 118.12003 * 272.81006 * 15 14 13 18 18 H 1.08993 * 117.44619 * 343.89450 * 17 15 14 19 19 C 1.50697 * 117.44028 * 199.18134 * 17 15 14 20 20 O 1.20830 * 120.00348 * 0.02562 * 19 17 15 21 21 O 1.34233 * 119.99768 * 179.97438 * 19 17 15 22 22 C 1.53005 * 60.55745 * 91.53829 * 17 15 14 23 23 H 1.09001 * 119.54221 * 111.75742 * 22 17 15 24 24 C 1.48154 * 127.83396 * 359.68243 * 13 11 9 25 25 C 1.50691 * 109.46995 * 94.68306 * 9 7 2 26 26 C 1.38236 * 120.00205 * 233.70890 * 25 9 7 27 27 C 1.38235 * 120.00286 * 180.27757 * 26 25 9 28 28 C 1.38229 * 120.00072 * 359.48766 * 27 26 25 29 29 C 1.38241 * 119.99799 * 0.51245 * 28 27 26 30 30 C 1.38234 * 120.00308 * 53.72799 * 25 9 7 31 31 H 0.97002 * 120.00325 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.41276 * 338.37440 * 14 13 11 33 33 H 1.09005 * 110.40695 * 100.69008 * 14 13 11 34 34 H 0.96700 * 116.99746 * 180.02562 * 21 19 17 35 35 H 1.08994 * 110.40248 * 259.19336 * 24 13 11 36 36 H 1.08999 * 110.40475 * 21.63148 * 24 13 11 37 37 H 1.08008 * 119.99515 * 0.02562 * 26 25 9 38 38 H 1.08005 * 119.99764 * 179.72713 * 27 26 25 39 39 H 1.07996 * 120.00446 * 180.23930 * 28 27 26 40 40 H 1.07996 * 119.99862 * 179.71818 * 29 28 27 41 41 H 1.08002 * 119.99910 * 0.02562 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0831 9 6 1.2555 -2.4966 -0.1140 10 1 0.2384 -2.3645 0.2550 11 6 1.9540 -3.5514 0.7050 12 8 2.3766 -4.5539 0.1691 13 7 2.1090 -3.3806 2.0329 14 6 2.7615 -4.2968 2.9969 15 6 1.8729 -4.2329 4.2579 16 1 1.3775 -5.1509 4.5738 17 6 2.1589 -3.1374 5.2869 18 1 3.1215 -2.6298 5.2259 19 6 1.6158 -3.3332 6.6789 20 8 0.9823 -4.3267 6.9460 21 8 1.8368 -2.4042 7.6223 22 6 1.1502 -2.8728 4.1673 23 1 0.0930 -2.7666 4.4104 24 6 1.6707 -2.2313 2.8586 25 6 1.2143 -2.9271 -1.5575 26 6 0.0034 -3.2174 -2.1580 27 6 -0.0339 -3.6178 -3.4805 28 6 1.1386 -3.7177 -4.2058 29 6 2.3495 -3.4273 -3.6054 30 6 2.3873 -3.0320 -2.2813 31 1 -0.4851 0.8400 -0.0004 32 1 2.7858 -5.3117 2.6001 33 1 3.7711 -3.9539 3.2235 34 1 1.4690 -2.5741 8.5003 35 1 2.5115 -1.5694 3.0654 36 1 0.8709 -1.6862 2.3572 37 1 -0.9131 -3.1353 -1.5924 38 1 -0.9796 -3.8489 -3.9483 39 1 1.1091 -4.0267 -5.2402 40 1 3.2660 -3.5097 -4.1708 41 1 3.3334 -2.8059 -1.8121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608177985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:10 Heat of formation + Delta-G solvation = -63.347662 kcal Electronic energy + Delta-G solvation = -26037.148764 eV Core-core repulsion = 22268.960468 eV Total energy + Delta-G solvation = -3768.188297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84605 -39.56138 -38.49227 -37.24300 -36.21417 -33.79775 -33.06044 -31.12761 -29.96605 -28.52371 -27.51787 -26.45558 -24.22145 -23.18424 -21.62343 -20.80056 -20.53033 -19.97887 -18.55703 -18.29418 -17.21665 -16.81353 -16.05007 -15.90982 -15.74372 -14.93882 -14.79342 -14.49250 -14.21831 -13.92967 -13.71014 -13.18145 -12.88685 -12.62223 -12.46766 -12.31503 -12.15501 -11.97453 -11.74459 -11.66863 -11.47906 -11.35321 -11.07314 -11.03948 -10.70498 -10.46659 -10.33999 -10.22274 -10.21363 -9.92831 -9.50087 -8.84241 -8.63956 -8.13537 -7.97356 -7.65222 -6.32473 -4.37400 1.90105 2.34228 2.36898 2.71449 3.17450 3.24032 3.26109 3.49762 3.59417 3.69985 4.23976 4.50947 4.63412 4.74666 4.80405 5.04135 5.10737 5.14254 5.28888 5.66336 5.69993 5.74430 5.80560 5.84309 5.90085 6.04447 6.15967 6.20188 6.27416 6.32079 6.40624 6.45949 6.56494 6.82628 6.84574 6.97986 7.14362 7.34290 7.41760 7.57931 7.71378 7.73313 7.91912 8.02114 8.28062 8.64838 9.11679 9.27149 10.75778 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.004287 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.664707 B = 6529.960880 C = 7853.508638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.077 3.923 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.054 3.946 10 H 0.093 0.907 11 C 0.551 3.449 12 O -0.563 6.563 13 N -0.616 5.616 14 C 0.130 3.870 15 C -0.140 4.140 16 H 0.131 0.869 17 C -0.141 4.141 18 H 0.136 0.864 19 C 0.515 3.485 20 O -0.516 6.516 21 O -0.511 6.511 22 C -0.137 4.137 23 H 0.126 0.874 24 C 0.143 3.857 25 C -0.013 4.013 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.148 4.148 29 C -0.134 4.134 30 C -0.084 4.084 31 H 0.268 0.732 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -2.754 8.262 8.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.128 4.128 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.033 3.967 10 H 0.111 0.889 11 C 0.343 3.657 12 O -0.442 6.442 13 N -0.351 5.351 14 C 0.006 3.994 15 C -0.159 4.159 16 H 0.149 0.851 17 C -0.160 4.160 18 H 0.154 0.846 19 C 0.358 3.642 20 O -0.404 6.404 21 O -0.322 6.322 22 C -0.156 4.156 23 H 0.144 0.856 24 C 0.020 3.980 25 C -0.014 4.014 26 C -0.137 4.137 27 C -0.150 4.150 28 C -0.166 4.166 29 C -0.152 4.152 30 C -0.103 4.103 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.269 0.731 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.022 -3.372 7.487 8.456 hybrid contribution 0.185 0.955 0.761 1.235 sum 2.207 -2.417 8.248 8.874 Atomic orbital electron populations 1.69857 1.05928 1.27648 1.48073 1.24909 0.94871 0.99268 0.93750 0.86600 0.79720 0.82488 0.79056 1.19936 1.21063 1.19871 1.20598 0.93197 0.88423 1.52701 0.92072 1.18112 0.99626 0.91665 0.87321 0.88892 1.21494 0.77735 0.87083 0.79338 1.90602 1.51826 1.31479 1.70249 1.49076 1.58919 1.20406 1.06650 1.21652 0.94701 0.96619 0.86390 1.23748 1.02800 0.93968 0.95381 0.85086 1.21783 1.02565 1.06592 0.85058 0.84609 1.22261 0.76014 0.79532 0.86432 1.90721 1.38218 1.29700 1.81755 1.84528 1.73933 1.49463 1.24295 1.24035 0.97643 0.99432 0.94499 0.85564 1.21875 1.01250 0.88217 0.86653 1.20033 0.92148 0.92140 0.97107 1.20997 0.97753 1.00100 0.94892 1.20907 0.97316 1.01889 0.94883 1.20809 0.93074 1.03774 0.98936 1.20965 0.97029 1.01724 0.95525 1.20832 0.98361 0.97814 0.93254 0.92168 0.89413 0.91280 0.73112 0.90708 0.86790 0.86974 0.87509 0.87673 0.87550 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.95 12.77 55.43 0.71 -21.24 16 2 C 0.08 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.89 19.17 29.54 -169.99 -5.02 14.15 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.51 -12.16 6.08 -34.44 -0.21 -12.37 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.05 1.24 1.79 -94.08 -0.17 1.07 16 10 H 0.09 2.27 6.82 -51.93 -0.35 1.92 16 11 C 0.55 12.12 7.16 -10.98 -0.08 12.04 16 12 O -0.56 -13.65 15.69 5.56 0.09 -13.56 16 13 N -0.62 -11.29 3.30 -169.07 -0.56 -11.85 16 14 C 0.13 1.93 6.85 -2.41 -0.02 1.91 16 15 C -0.14 -1.82 6.58 -89.21 -0.59 -2.41 16 16 H 0.13 1.72 7.80 -51.93 -0.41 1.32 16 17 C -0.14 -1.64 5.84 -91.77 -0.54 -2.17 16 18 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 19 C 0.51 6.04 8.11 36.00 0.29 6.34 16 20 O -0.52 -7.45 17.09 -18.75 -0.32 -7.77 16 21 O -0.51 -4.64 13.42 -39.27 -0.53 -5.17 16 22 C -0.14 -1.83 6.85 -89.01 -0.61 -2.44 16 23 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 24 C 0.14 2.32 5.87 -2.20 -0.01 2.31 16 25 C -0.01 -0.30 4.30 -104.63 -0.45 -0.75 16 26 C -0.12 -2.56 9.67 -39.58 -0.38 -2.95 16 27 C -0.13 -2.51 10.05 -39.59 -0.40 -2.91 16 28 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 29 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 30 C -0.08 -1.87 8.32 -39.58 -0.33 -2.20 16 31 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.41 1.86 9.10 45.56 0.41 2.27 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.11 2.13 6.90 -51.93 -0.36 1.77 16 37 H 0.11 2.32 7.96 -52.48 -0.42 1.90 16 38 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.11 2.48 7.89 -52.49 -0.41 2.07 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -29.90 353.36 -9.13 -39.04 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.45 Total: 9.99 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -4.38 Total: -8.91 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.15 Total: -33.09 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.76 Total: -26.50 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.90 -9.13 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.312 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds