Wall clock time and date at job start Tue Mar 31 2020 11:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99597 * 2 1 4 4 H 1.48503 * 109.47120 * 239.99389 * 3 2 1 5 5 H 1.48494 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46744 * 119.99890 * 3 2 1 7 7 C 1.37872 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00603 * 185.06298 * 7 2 1 9 9 C 1.50705 * 119.99757 * 5.06023 * 7 2 1 10 10 H 1.09001 * 109.46926 * 334.68263 * 9 7 2 11 11 C 1.50703 * 109.46912 * 214.68274 * 9 7 2 12 12 O 1.21279 * 119.99821 * 239.99941 * 11 9 7 13 13 N 1.34776 * 120.00397 * 59.99981 * 11 9 7 14 14 C 1.48135 * 127.83984 * 179.97438 * 13 11 9 15 15 C 1.54395 * 104.62149 * 219.58842 * 14 13 11 16 16 H 1.08993 * 117.61464 * 117.23100 * 15 14 13 17 17 C 1.53000 * 118.12003 * 272.81006 * 15 14 13 18 18 H 1.08993 * 117.44619 * 343.89450 * 17 15 14 19 19 C 1.50697 * 117.44028 * 199.18134 * 17 15 14 20 20 O 1.20830 * 120.00348 * 0.02562 * 19 17 15 21 21 O 1.34233 * 119.99768 * 179.97438 * 19 17 15 22 22 C 1.53005 * 60.55745 * 91.53829 * 17 15 14 23 23 H 1.09001 * 119.54221 * 111.75742 * 22 17 15 24 24 C 1.48154 * 127.83396 * 359.68243 * 13 11 9 25 25 C 1.50691 * 109.46995 * 94.68306 * 9 7 2 26 26 C 1.38236 * 120.00205 * 233.70890 * 25 9 7 27 27 C 1.38235 * 120.00286 * 180.27757 * 26 25 9 28 28 C 1.38229 * 120.00072 * 359.48766 * 27 26 25 29 29 C 1.38241 * 119.99799 * 0.51245 * 28 27 26 30 30 C 1.38234 * 120.00308 * 53.72799 * 25 9 7 31 31 H 0.97002 * 120.00325 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.41276 * 338.37440 * 14 13 11 33 33 H 1.09005 * 110.40695 * 100.69008 * 14 13 11 34 34 H 0.96700 * 116.99746 * 180.02562 * 21 19 17 35 35 H 1.08994 * 110.40248 * 259.19336 * 24 13 11 36 36 H 1.08999 * 110.40475 * 21.63148 * 24 13 11 37 37 H 1.08008 * 119.99515 * 0.02562 * 26 25 9 38 38 H 1.08005 * 119.99764 * 179.72713 * 27 26 25 39 39 H 1.07996 * 120.00446 * 180.23930 * 28 27 26 40 40 H 1.07996 * 119.99862 * 179.71818 * 29 28 27 41 41 H 1.08002 * 119.99910 * 0.02562 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0831 9 6 1.2555 -2.4966 -0.1140 10 1 0.2384 -2.3645 0.2550 11 6 1.9540 -3.5514 0.7050 12 8 2.3766 -4.5539 0.1691 13 7 2.1090 -3.3806 2.0329 14 6 2.7615 -4.2968 2.9969 15 6 1.8729 -4.2329 4.2579 16 1 1.3775 -5.1509 4.5738 17 6 2.1589 -3.1374 5.2869 18 1 3.1215 -2.6298 5.2259 19 6 1.6158 -3.3332 6.6789 20 8 0.9823 -4.3267 6.9460 21 8 1.8368 -2.4042 7.6223 22 6 1.1502 -2.8728 4.1673 23 1 0.0930 -2.7666 4.4104 24 6 1.6707 -2.2313 2.8586 25 6 1.2143 -2.9271 -1.5575 26 6 0.0034 -3.2174 -2.1580 27 6 -0.0339 -3.6178 -3.4805 28 6 1.1386 -3.7177 -4.2058 29 6 2.3495 -3.4273 -3.6054 30 6 2.3873 -3.0320 -2.2813 31 1 -0.4851 0.8400 -0.0004 32 1 2.7858 -5.3117 2.6001 33 1 3.7711 -3.9539 3.2235 34 1 1.4690 -2.5741 8.5003 35 1 2.5115 -1.5694 3.0654 36 1 0.8709 -1.6862 2.3572 37 1 -0.9131 -3.1353 -1.5924 38 1 -0.9796 -3.8489 -3.9483 39 1 1.1091 -4.0267 -5.2402 40 1 3.2660 -3.5097 -4.1708 41 1 3.3334 -2.8059 -1.8121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608177985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:08 Heat of formation + Delta-G solvation = -80.178838 kcal Electronic energy + Delta-G solvation = -26037.878619 eV Core-core repulsion = 22268.960468 eV Total energy + Delta-G solvation = -3768.918151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.93498 -40.89969 -39.90381 -38.77126 -37.11485 -35.57336 -34.46191 -32.85779 -31.54222 -29.90192 -28.98371 -27.82411 -25.82402 -24.53875 -23.21169 -22.28919 -21.58117 -21.14308 -20.12404 -19.19761 -18.64218 -18.26662 -17.62046 -17.41732 -16.77466 -16.57759 -16.15957 -16.07639 -15.65938 -15.28805 -15.08973 -14.62066 -14.36036 -14.04948 -13.96876 -13.63523 -13.49366 -13.44880 -13.28908 -13.12273 -12.81052 -12.74280 -12.63609 -12.49606 -12.18206 -11.96156 -11.70965 -11.67421 -11.37053 -11.27594 -11.22932 -10.66960 -10.40026 -9.63366 -9.56150 -9.27127 -8.17877 -6.27412 0.74661 0.79028 0.94693 1.45269 1.48781 1.53914 1.77106 1.94357 2.26666 2.45140 2.45677 3.10097 3.25867 3.40101 3.58029 3.65498 3.96367 4.13432 4.21028 4.28854 4.29962 4.35704 4.43942 4.50406 4.54897 4.74429 4.80167 4.87196 4.95750 4.99273 5.02396 5.06784 5.14825 5.32774 5.44581 5.49367 5.55203 5.67116 5.78083 5.82949 5.95552 6.23195 6.40004 6.68043 6.75972 6.96839 7.37939 7.43554 8.90075 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.004287 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.664707 B = 6529.960880 C = 7853.508638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.058 3.942 10 H 0.069 0.931 11 C 0.546 3.454 12 O -0.593 6.593 13 N -0.619 5.619 14 C 0.128 3.872 15 C -0.136 4.136 16 H 0.132 0.868 17 C -0.117 4.117 18 H 0.158 0.842 19 C 0.523 3.477 20 O -0.545 6.545 21 O -0.502 6.502 22 C -0.140 4.140 23 H 0.130 0.870 24 C 0.145 3.855 25 C -0.042 4.042 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.143 4.143 29 C -0.135 4.135 30 C -0.110 4.110 31 H 0.268 0.732 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.432 0.568 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -2.517 8.609 9.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.159 4.159 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.037 3.963 10 H 0.087 0.913 11 C 0.338 3.662 12 O -0.475 6.475 13 N -0.352 5.352 14 C 0.006 3.994 15 C -0.156 4.156 16 H 0.150 0.850 17 C -0.136 4.136 18 H 0.176 0.824 19 C 0.367 3.633 20 O -0.436 6.436 21 O -0.316 6.316 22 C -0.159 4.159 23 H 0.148 0.852 24 C 0.023 3.977 25 C -0.043 4.043 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.161 4.161 29 C -0.153 4.153 30 C -0.128 4.128 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.294 0.706 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.825 -3.113 7.906 8.955 hybrid contribution -0.070 0.856 0.683 1.097 sum 2.755 -2.257 8.589 9.299 Atomic orbital electron populations 1.69956 1.06954 1.28015 1.49117 1.25440 0.95382 1.01524 0.93572 0.85813 0.78676 0.79451 0.79057 1.20788 1.20984 1.18407 1.20581 0.92557 0.89088 1.52394 0.93093 1.17965 0.98229 0.91955 0.88131 0.91297 1.21264 0.77795 0.86510 0.80635 1.90559 1.53280 1.32327 1.71297 1.49088 1.58222 1.21675 1.06173 1.21816 0.95840 0.95540 0.86201 1.23580 1.02420 0.94112 0.95453 0.85007 1.21788 1.02618 1.04535 0.84630 0.82412 1.22094 0.75240 0.79281 0.86683 1.90727 1.39493 1.31034 1.82322 1.84473 1.73573 1.48232 1.25325 1.23802 0.98357 0.99438 0.94302 0.85213 1.21821 1.00721 0.87761 0.87413 1.20165 0.93241 0.93715 0.97164 1.21149 0.97097 1.01508 0.96459 1.21308 0.99344 1.00299 0.93784 1.21282 0.92033 1.02049 1.00691 1.21342 0.99058 1.00363 0.94537 1.20863 0.97428 0.99713 0.94802 0.92310 0.90276 0.89091 0.70566 0.89680 0.89721 0.87535 0.84232 0.83508 0.84606 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.48 12.77 21.44 0.27 -46.21 16 2 C 0.04 2.11 5.45 84.65 0.46 2.57 16 3 Si 0.94 39.49 29.54 68.60 2.03 41.52 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.51 -25.03 6.08 25.60 0.16 -24.88 16 8 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 9 C 0.06 2.82 1.79 -13.03 -0.02 2.80 16 10 H 0.07 3.61 6.82 -2.39 -0.02 3.59 16 11 C 0.55 25.11 7.16 87.66 0.63 25.73 16 12 O -0.59 -29.93 15.69 -3.03 -0.05 -29.97 16 13 N -0.62 -23.23 3.30 -807.21 -2.67 -25.89 16 14 C 0.13 3.75 6.85 86.54 0.59 4.34 16 15 C -0.14 -3.41 6.58 -9.88 -0.06 -3.47 16 16 H 0.13 3.35 7.80 -2.39 -0.02 3.33 16 17 C -0.12 -2.44 5.84 -11.54 -0.07 -2.51 16 18 H 0.16 2.67 8.14 -2.39 -0.02 2.65 16 19 C 0.52 10.99 8.11 71.24 0.58 11.57 16 20 O -0.54 -14.78 17.09 21.95 0.38 -14.41 16 21 O -0.50 -7.54 13.42 -51.45 -0.69 -8.23 16 22 C -0.14 -3.62 6.85 -9.75 -0.07 -3.69 16 23 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 24 C 0.15 4.77 5.87 86.66 0.51 5.28 16 25 C -0.04 -2.00 4.30 -19.87 -0.09 -2.09 16 26 C -0.14 -6.33 9.67 22.27 0.22 -6.12 16 27 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 28 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 29 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 30 C -0.11 -4.97 8.32 22.27 0.19 -4.79 16 31 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 32 H 0.08 2.47 7.88 -2.39 -0.02 2.45 16 33 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.43 2.54 9.10 -74.06 -0.67 1.86 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.08 3.32 6.90 -2.39 -0.02 3.30 16 37 H 0.11 4.64 7.96 -2.91 -0.02 4.61 16 38 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.10 4.50 7.89 -2.91 -0.02 4.47 16 Total: -1.00 -66.37 353.36 3.35 -63.02 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.39 Total: 29.44 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 3.69 Total: -9.27 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.39 Total: -72.10 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.36 Total: -52.61 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -66.37 3.35 -63.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.159 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds