Wall clock time and date at job start Tue Mar 31 2020 11:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48491 * 109.47374 * 270.00873 * 3 2 1 5 5 H 1.48500 * 109.46830 * 30.00791 * 3 2 1 6 6 H 1.48505 * 109.47092 * 150.00098 * 3 2 1 7 7 C 1.38661 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99772 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00059 * 185.05506 * 9 7 2 11 11 C 1.38903 * 120.06963 * 354.46979 * 10 9 7 12 12 C 1.38074 * 119.93438 * 180.02562 * 11 10 9 13 13 C 1.38323 * 120.06810 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.13633 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96333 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47167 * 89.99728 * 15 14 13 17 17 C 1.34782 * 120.00059 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99547 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00046 * 179.97438 * 17 16 15 20 20 H 1.08997 * 115.53115 * 325.58554 * 19 17 16 21 21 C 1.52955 * 117.45707 * 111.07640 * 19 17 16 22 22 H 1.08995 * 119.09533 * 356.59520 * 21 19 17 23 23 C 1.51827 * 118.42776 * 202.80644 * 21 19 17 24 24 O 1.20756 * 127.58196 * 139.67703 * 23 21 19 25 25 C 1.52487 * 104.84671 * 319.71137 * 23 21 19 26 26 C 1.54904 * 102.94378 * 321.66822 * 25 23 21 27 27 C 1.53048 * 117.44046 * 180.12887 * 19 17 16 28 28 H 1.09006 * 119.42800 * 3.91262 * 27 19 17 29 29 C 1.38120 * 120.07033 * 0.26964 * 14 13 12 30 30 H 0.96998 * 119.99754 * 359.97438 * 1 2 3 31 31 H 1.08009 * 120.03414 * 359.97195 * 11 10 9 32 32 H 1.08001 * 119.97015 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.93130 * 179.97438 * 13 12 11 34 34 H 1.08995 * 109.46979 * 329.99775 * 15 14 13 35 35 H 1.09002 * 109.47055 * 209.99610 * 15 14 13 36 36 H 0.97000 * 120.00298 * 359.97438 * 16 15 14 37 37 H 1.09004 * 110.71899 * 80.02715 * 25 23 21 38 38 H 1.08998 * 110.72614 * 203.29786 * 25 23 21 39 39 H 1.08992 * 110.59131 * 156.35998 * 26 25 23 40 40 H 1.09005 * 110.58399 * 279.12866 * 26 25 23 41 41 H 1.08001 * 120.03446 * 179.71170 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4472 2.6525 0.7002 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1081 11 6 3.2232 -3.5747 -0.0952 12 6 3.8529 -4.7987 -0.2038 13 6 5.2293 -4.8615 -0.3259 14 6 5.9789 -3.6996 -0.3391 15 6 7.4782 -3.7726 -0.4728 16 7 7.8443 -3.7347 -1.8908 17 6 9.1414 -3.7874 -2.2535 18 8 10.0053 -3.8666 -1.4059 19 6 9.5180 -3.7490 -3.7121 20 1 8.8222 -4.2432 -4.3901 21 6 10.2316 -2.4965 -4.2235 22 1 10.3915 -1.6618 -3.5412 23 6 10.1597 -2.1784 -5.7064 24 8 10.0168 -1.0955 -6.2212 25 6 10.3069 -3.5269 -6.4028 26 6 11.3580 -4.2559 -5.5291 27 6 11.0074 -3.8154 -4.0579 28 1 11.7370 -3.9518 -3.2596 29 6 5.3554 -2.4725 -0.2247 30 1 -0.4850 0.8400 0.0004 31 1 2.1484 -3.5263 0.0005 32 1 3.2702 -5.7080 -0.1934 33 1 5.7196 -5.8201 -0.4102 34 1 7.8377 -4.7011 -0.0294 35 1 7.9305 -2.9250 0.0420 36 1 7.1534 -3.6717 -2.5687 37 1 9.3606 -4.0680 -6.3995 38 1 10.6745 -3.3973 -7.4207 39 1 11.2653 -5.3362 -5.6392 40 1 12.3651 -3.9301 -5.7894 41 1 5.9418 -1.5656 -0.2304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646244744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:41 Heat of formation + Delta-G solvation = -44.776720 kcal Electronic energy + Delta-G solvation = -24553.442190 eV Core-core repulsion = 20786.059190 eV Total energy + Delta-G solvation = -3767.383000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.17570 -39.64796 -39.14438 -37.62141 -36.94335 -34.68329 -32.48002 -31.86074 -30.87611 -29.47584 -26.83369 -26.67093 -25.31894 -24.30746 -21.91187 -21.27057 -20.78809 -20.16893 -19.50793 -18.21469 -17.76741 -17.15998 -16.17357 -16.09026 -15.97016 -15.48479 -15.30246 -14.94888 -14.57510 -14.46064 -14.06887 -13.88060 -13.73321 -13.59303 -13.40166 -12.78897 -12.77215 -12.62242 -12.25146 -12.16735 -12.05961 -11.87409 -11.52926 -10.99849 -10.93352 -10.87372 -10.84294 -10.79486 -10.24390 -10.17128 -9.78682 -9.50506 -9.18325 -8.96280 -8.39529 -7.53260 -6.49766 -4.17264 1.27774 1.73356 2.09692 2.30451 2.92917 3.17399 3.21573 3.35141 3.35957 3.68771 3.89243 4.06719 4.17143 4.26935 4.36195 4.46942 4.57887 4.60118 4.66978 4.80225 4.90791 5.00377 5.05464 5.28317 5.31269 5.35310 5.45232 5.51836 5.56491 5.65430 5.68671 5.75348 5.96006 6.09591 6.27625 6.36248 6.61995 6.93836 7.05049 7.05375 7.15390 7.34963 7.46004 7.68896 7.93656 8.02139 8.85030 9.45545 10.57554 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.002820 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.892376 B = 9927.629224 C =11174.330688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.157 3.843 11 C -0.212 4.212 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.077 4.077 15 C 0.168 3.832 16 N -0.713 5.713 17 C 0.543 3.457 18 O -0.539 6.539 19 C -0.136 4.136 20 H 0.130 0.870 21 C -0.218 4.218 22 H 0.131 0.869 23 C 0.398 3.602 24 O -0.429 6.429 25 C -0.187 4.187 26 C -0.091 4.091 27 C -0.103 4.103 28 H 0.142 0.858 29 C -0.171 4.171 30 H 0.281 0.719 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.406 0.594 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.970 -10.995 -9.774 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.078 4.078 15 C 0.045 3.955 16 N -0.364 5.364 17 C 0.328 3.672 18 O -0.417 6.417 19 C -0.157 4.157 20 H 0.148 0.852 21 C -0.238 4.238 22 H 0.149 0.851 23 C 0.271 3.729 24 O -0.299 6.299 25 C -0.225 4.225 26 C -0.128 4.128 27 C -0.122 4.122 28 H 0.160 0.840 29 C -0.191 4.191 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.241 0.759 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.380 -10.075 -9.395 23.777 hybrid contribution -0.501 0.708 -0.146 0.880 sum 18.879 -9.367 -9.542 23.134 Atomic orbital electron populations 1.69640 1.05593 1.28651 1.47520 1.24472 0.95028 0.98891 0.95495 0.86187 0.80353 0.81366 0.79060 1.19800 1.20681 1.18328 1.20763 0.76758 0.96673 1.52542 0.87563 1.83578 1.22719 1.25574 1.80068 1.19059 0.91539 0.85655 0.93325 1.21377 1.01345 0.91920 1.08454 1.20807 0.94158 0.96847 0.97731 1.20543 0.93861 0.96708 1.09489 1.19237 0.93264 0.93051 1.02201 1.20192 0.91499 1.02696 0.81086 1.46061 1.07173 1.73888 1.09236 1.19377 0.82698 0.76333 0.88804 1.90714 1.49075 1.49715 1.52182 1.22145 0.97712 1.00507 0.95344 0.85177 1.23705 1.07812 0.94098 0.98169 0.85140 1.24326 0.69312 0.89573 0.89646 1.90454 1.35946 1.29100 1.74443 1.23132 1.02126 0.96070 1.01167 1.22514 0.98808 1.01255 0.90231 1.23960 0.93050 0.96386 0.98802 0.84022 1.20083 0.92005 0.97221 1.09812 0.90923 0.84797 0.86931 0.87256 0.90618 0.90723 0.75939 0.87198 0.88417 0.89439 0.89513 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.81 13.96 55.48 0.77 -24.04 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 3 Si 0.90 21.31 28.62 -169.99 -4.86 16.45 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.39 -10.71 9.95 30.89 0.31 -10.40 16 8 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 9 O -0.21 -5.46 8.59 0.06 0.00 -5.45 16 10 C 0.16 3.40 6.65 -39.11 -0.26 3.14 16 11 C -0.21 -4.26 9.17 -39.40 -0.36 -4.62 16 12 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 13 C -0.19 -2.77 9.70 -39.53 -0.38 -3.15 16 14 C -0.08 -1.17 5.25 -104.65 -0.55 -1.72 16 15 C 0.17 2.17 5.80 -5.19 -0.03 2.14 16 16 N -0.71 -8.05 5.55 -61.47 -0.34 -8.39 16 17 C 0.54 6.24 7.61 -10.99 -0.08 6.15 16 18 O -0.54 -7.99 16.33 5.55 0.09 -7.90 16 19 C -0.14 -1.10 5.46 -91.77 -0.50 -1.60 16 20 H 0.13 0.74 7.12 -51.93 -0.37 0.37 16 21 C -0.22 -1.92 6.59 -90.76 -0.60 -2.52 16 22 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 23 C 0.40 3.64 7.85 -27.59 -0.22 3.43 16 24 O -0.43 -5.63 17.99 6.00 0.11 -5.52 16 25 C -0.19 -0.99 6.32 -25.99 -0.16 -1.15 16 26 C -0.09 -0.40 6.87 -23.26 -0.16 -0.56 16 27 C -0.10 -0.73 6.82 -87.66 -0.60 -1.33 16 28 H 0.14 1.10 7.79 -51.93 -0.40 0.70 16 29 C -0.17 -3.14 9.64 -39.40 -0.38 -3.52 16 30 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.13 2.86 5.64 -52.48 -0.30 2.56 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.41 4.03 8.46 -40.82 -0.35 3.68 16 37 H 0.11 0.43 7.32 -51.93 -0.38 0.05 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -31.95 354.55 -8.38 -40.33 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.02 Total: 4.87 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -4.47 Total: -15.69 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.43 Total: -32.42 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.20 Total: -18.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.95 -8.38 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646244744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.447 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds