Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48491 * 109.47374 * 270.00873 * 3 2 1 5 5 H 1.48500 * 109.46830 * 30.00791 * 3 2 1 6 6 H 1.48505 * 109.47092 * 150.00098 * 3 2 1 7 7 C 1.38661 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99772 * 179.97438 * 7 2 1 10 10 C 1.35746 * 117.00059 * 185.05506 * 9 7 2 11 11 C 1.38903 * 120.06963 * 354.46979 * 10 9 7 12 12 C 1.38074 * 119.93438 * 180.02562 * 11 10 9 13 13 C 1.38323 * 120.06810 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.13633 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96333 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47167 * 89.99728 * 15 14 13 17 17 C 1.34782 * 120.00059 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99547 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00046 * 179.97438 * 17 16 15 20 20 H 1.08997 * 115.53115 * 325.58554 * 19 17 16 21 21 C 1.52955 * 117.45707 * 111.07640 * 19 17 16 22 22 H 1.08995 * 119.09533 * 356.59520 * 21 19 17 23 23 C 1.51827 * 118.42776 * 202.80644 * 21 19 17 24 24 O 1.20756 * 127.58196 * 139.67703 * 23 21 19 25 25 C 1.52487 * 104.84671 * 319.71137 * 23 21 19 26 26 C 1.54904 * 102.94378 * 321.66822 * 25 23 21 27 27 C 1.53048 * 117.44046 * 180.12887 * 19 17 16 28 28 H 1.09006 * 119.42800 * 3.91262 * 27 19 17 29 29 C 1.38120 * 120.07033 * 0.26964 * 14 13 12 30 30 H 0.96998 * 119.99754 * 359.97438 * 1 2 3 31 31 H 1.08009 * 120.03414 * 359.97195 * 11 10 9 32 32 H 1.08001 * 119.97015 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.93130 * 179.97438 * 13 12 11 34 34 H 1.08995 * 109.46979 * 329.99775 * 15 14 13 35 35 H 1.09002 * 109.47055 * 209.99610 * 15 14 13 36 36 H 0.97000 * 120.00298 * 359.97438 * 16 15 14 37 37 H 1.09004 * 110.71899 * 80.02715 * 25 23 21 38 38 H 1.08998 * 110.72614 * 203.29786 * 25 23 21 39 39 H 1.08992 * 110.59131 * 156.35998 * 26 25 23 40 40 H 1.09005 * 110.58399 * 279.12866 * 26 25 23 41 41 H 1.08001 * 120.03446 * 179.71170 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4472 2.6525 0.7002 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1081 11 6 3.2232 -3.5747 -0.0952 12 6 3.8529 -4.7987 -0.2038 13 6 5.2293 -4.8615 -0.3259 14 6 5.9789 -3.6996 -0.3391 15 6 7.4782 -3.7726 -0.4728 16 7 7.8443 -3.7347 -1.8908 17 6 9.1414 -3.7874 -2.2535 18 8 10.0053 -3.8666 -1.4059 19 6 9.5180 -3.7490 -3.7121 20 1 8.8222 -4.2432 -4.3901 21 6 10.2316 -2.4965 -4.2235 22 1 10.3915 -1.6618 -3.5412 23 6 10.1597 -2.1784 -5.7064 24 8 10.0168 -1.0955 -6.2212 25 6 10.3069 -3.5269 -6.4028 26 6 11.3580 -4.2559 -5.5291 27 6 11.0074 -3.8154 -4.0579 28 1 11.7370 -3.9518 -3.2596 29 6 5.3554 -2.4725 -0.2247 30 1 -0.4850 0.8400 0.0004 31 1 2.1484 -3.5263 0.0005 32 1 3.2702 -5.7080 -0.1934 33 1 5.7196 -5.8201 -0.4102 34 1 7.8377 -4.7011 -0.0294 35 1 7.9305 -2.9250 0.0420 36 1 7.1534 -3.6717 -2.5687 37 1 9.3606 -4.0680 -6.3995 38 1 10.6745 -3.3973 -7.4207 39 1 11.2653 -5.3362 -5.6392 40 1 12.3651 -3.9301 -5.7894 41 1 5.9418 -1.5656 -0.2304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646244744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = -65.253428 kcal Electronic energy + Delta-G solvation = -24554.330127 eV Core-core repulsion = 20786.059190 eV Total energy + Delta-G solvation = -3768.270937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89461 -41.01745 -40.27316 -38.72585 -38.16649 -35.81755 -34.47393 -32.62458 -31.95828 -30.99488 -27.84522 -27.38486 -27.13053 -25.20281 -23.34504 -22.36606 -21.94163 -20.86932 -20.23719 -19.70919 -19.17424 -18.50931 -17.11227 -16.96625 -16.80951 -16.78283 -16.60662 -16.06999 -15.82465 -15.70837 -15.43759 -15.30252 -14.83230 -14.49770 -14.33064 -14.21665 -14.19127 -13.86095 -13.44446 -13.25660 -13.13001 -12.61795 -12.57872 -12.49461 -12.39699 -12.32332 -11.96682 -11.55271 -11.47890 -11.34762 -11.06456 -10.92624 -10.46413 -10.17671 -9.80875 -9.14035 -8.52525 -6.24996 0.32426 0.58305 0.63427 1.29613 1.32441 1.45228 1.48874 2.04447 2.24989 2.67218 2.75840 2.98159 3.05277 3.12525 3.30124 3.49250 3.64354 3.71988 3.92589 4.03451 4.05203 4.13520 4.24701 4.26420 4.39568 4.48072 4.49536 4.63559 4.68359 4.73686 4.91165 4.96681 5.05296 5.14918 5.16388 5.16830 5.30636 5.36102 5.61087 5.67291 5.73352 5.87596 6.17671 6.38726 6.45950 6.82269 7.11843 7.56529 8.58949 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.002820 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.892376 B = 9927.629224 C =11174.330688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.398 4.398 8 H 0.085 0.915 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.228 4.228 12 C -0.073 4.073 13 C -0.156 4.156 14 C -0.062 4.062 15 C 0.173 3.827 16 N -0.709 5.709 17 C 0.541 3.459 18 O -0.575 6.575 19 C -0.129 4.129 20 H 0.164 0.836 21 C -0.240 4.240 22 H 0.106 0.894 23 C 0.397 3.603 24 O -0.481 6.481 25 C -0.177 4.177 26 C -0.079 4.079 27 C -0.088 4.088 28 H 0.133 0.867 29 C -0.173 4.173 30 H 0.285 0.715 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.414 0.586 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.613 -13.960 -11.177 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.474 4.474 8 H 0.103 0.897 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.247 4.247 12 C -0.091 4.091 13 C -0.175 4.175 14 C -0.062 4.062 15 C 0.050 3.950 16 N -0.360 5.360 17 C 0.328 3.672 18 O -0.455 6.455 19 C -0.150 4.150 20 H 0.181 0.819 21 C -0.260 4.260 22 H 0.124 0.876 23 C 0.274 3.726 24 O -0.355 6.355 25 C -0.214 4.214 26 C -0.116 4.116 27 C -0.107 4.107 28 H 0.151 0.849 29 C -0.192 4.192 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.151 0.849 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.045 -13.095 -10.807 27.825 hybrid contribution -1.083 1.310 0.323 1.730 sum 20.962 -11.784 -10.484 26.233 Atomic orbital electron populations 1.69718 1.06802 1.29571 1.50130 1.25218 0.95818 1.01956 0.95629 0.85281 0.78796 0.77830 0.79221 1.19182 1.19244 1.18959 1.20711 0.78008 0.96154 1.52526 0.89750 1.83524 1.21320 1.27509 1.83072 1.19586 0.92930 0.85260 0.95266 1.21416 1.00439 0.93300 1.09581 1.21165 0.95295 0.96356 0.96274 1.21056 0.93055 0.98251 1.05120 1.19462 0.94624 0.91964 1.00173 1.20085 0.89361 1.03280 0.82262 1.45973 1.07611 1.73675 1.08692 1.19885 0.82093 0.75182 0.89997 1.90703 1.49939 1.51265 1.53556 1.22174 0.99284 1.00025 0.93515 0.81879 1.23678 1.09970 0.94291 0.98053 0.87622 1.24910 0.67320 0.90366 0.90002 1.90434 1.38563 1.31326 1.75193 1.23201 1.03616 0.93186 1.01432 1.22583 0.98929 1.02709 0.87426 1.24110 0.92122 0.94149 1.00296 0.84876 1.20279 0.90617 0.98883 1.09449 0.90565 0.87212 0.83660 0.82912 0.88981 0.91557 0.74928 0.84871 0.87200 0.86715 0.88574 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 13.96 21.62 0.30 -54.19 16 2 C 0.01 0.71 5.49 84.84 0.47 1.18 16 3 Si 0.97 45.42 28.62 68.60 1.96 47.38 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.40 -22.96 9.95 67.92 0.68 -22.29 16 8 H 0.09 5.06 5.44 -2.91 -0.02 5.04 16 9 O -0.25 -13.10 8.59 -22.72 -0.20 -13.30 16 10 C 0.12 5.27 6.65 22.58 0.15 5.42 16 11 C -0.23 -9.28 9.17 22.39 0.21 -9.07 16 12 C -0.07 -2.19 10.04 22.25 0.22 -1.97 16 13 C -0.16 -3.92 9.70 22.30 0.22 -3.70 16 14 C -0.06 -1.69 5.25 -19.88 -0.10 -1.79 16 15 C 0.17 3.93 5.80 85.63 0.50 4.42 16 16 N -0.71 -13.85 5.55 -466.79 -2.59 -16.44 16 17 C 0.54 11.13 7.61 87.65 0.67 11.80 16 18 O -0.57 -16.05 16.33 -3.04 -0.05 -16.10 16 19 C -0.13 -1.72 5.46 -11.54 -0.06 -1.78 16 20 H 0.16 1.07 7.12 -2.39 -0.02 1.05 16 21 C -0.24 -3.96 6.59 -10.89 -0.07 -4.03 16 22 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 23 C 0.40 6.77 7.85 30.04 0.24 7.00 16 24 O -0.48 -12.74 17.99 -1.44 -0.03 -12.77 16 25 C -0.18 -1.20 6.32 31.07 0.20 -1.01 16 26 C -0.08 -0.37 6.87 32.84 0.23 -0.14 16 27 C -0.09 -1.00 6.82 -8.87 -0.06 -1.07 16 28 H 0.13 1.81 7.79 -2.38 -0.02 1.79 16 29 C -0.17 -6.21 9.64 22.39 0.22 -5.99 16 30 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.11 4.98 5.64 -2.91 -0.02 4.96 16 32 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 36 H 0.41 6.82 8.46 -92.71 -0.78 6.03 16 37 H 0.13 0.36 7.32 -2.39 -0.02 0.34 16 38 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -75.33 354.55 3.37 -71.96 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.29 Total: 16.47 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.67 Total: -23.01 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -2.29 Total: -70.63 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.27 Total: -42.16 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.96 Total: 47.38 kcal Total: -75.33 3.37 -71.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646244744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.702 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds