Wall clock time and date at job start Tue Mar 31 2020 11:26:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31557 * 1
3 3 Si 1.86796 * 120.00359 * 2 1
4 4 H 1.48491 * 109.47374 * 270.00873 * 3 2 1
5 5 H 1.48500 * 109.46830 * 30.00791 * 3 2 1
6 6 H 1.48505 * 109.47092 * 150.00098 * 3 2 1
7 7 C 1.38661 * 119.99578 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99800 * 359.97438 * 7 2 1
9 9 O 1.34833 * 119.99772 * 179.97438 * 7 2 1
10 10 C 1.35746 * 117.00059 * 185.05506 * 9 7 2
11 11 C 1.38903 * 120.06963 * 354.46979 * 10 9 7
12 12 C 1.38074 * 119.93438 * 180.02562 * 11 10 9
13 13 C 1.38323 * 120.06810 * 359.97438 * 12 11 10
14 14 C 1.38279 * 120.13633 * 0.02562 * 13 12 11
15 15 C 1.50702 * 119.96333 * 180.02562 * 14 13 12
16 16 N 1.46500 * 109.47167 * 89.99728 * 15 14 13
17 17 C 1.34782 * 120.00059 * 179.97438 * 16 15 14
18 18 O 1.21284 * 119.99547 * 0.02562 * 17 16 15
19 19 C 1.50692 * 120.00046 * 179.97438 * 17 16 15
20 20 H 1.08997 * 115.53115 * 325.58554 * 19 17 16
21 21 C 1.52955 * 117.45707 * 111.07640 * 19 17 16
22 22 H 1.08995 * 119.09533 * 356.59520 * 21 19 17
23 23 C 1.51827 * 118.42776 * 202.80644 * 21 19 17
24 24 O 1.20756 * 127.58196 * 139.67703 * 23 21 19
25 25 C 1.52487 * 104.84671 * 319.71137 * 23 21 19
26 26 C 1.54904 * 102.94378 * 321.66822 * 25 23 21
27 27 C 1.53048 * 117.44046 * 180.12887 * 19 17 16
28 28 H 1.09006 * 119.42800 * 3.91262 * 27 19 17
29 29 C 1.38120 * 120.07033 * 0.26964 * 14 13 12
30 30 H 0.96998 * 119.99754 * 359.97438 * 1 2 3
31 31 H 1.08009 * 120.03414 * 359.97195 * 11 10 9
32 32 H 1.08001 * 119.97015 * 179.97438 * 12 11 10
33 33 H 1.08002 * 119.93130 * 179.97438 * 13 12 11
34 34 H 1.08995 * 109.46979 * 329.99775 * 15 14 13
35 35 H 1.09002 * 109.47055 * 209.99610 * 15 14 13
36 36 H 0.97000 * 120.00298 * 359.97438 * 16 15 14
37 37 H 1.09004 * 110.71899 * 80.02715 * 25 23 21
38 38 H 1.08998 * 110.72614 * 203.29786 * 25 23 21
39 39 H 1.08992 * 110.59131 * 156.35998 * 26 25 23
40 40 H 1.09005 * 110.58399 * 279.12866 * 26 25 23
41 41 H 1.08001 * 120.03446 * 179.71170 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6176 0.0000
4 1 2.4970 2.0464 -1.4000
5 1 1.4472 2.6525 0.7002
6 1 3.5472 1.4400 0.7000
7 6 2.0088 -1.2009 -0.0005
8 1 1.4687 -2.1361 -0.0005
9 8 3.3571 -1.2009 -0.0011
10 6 3.9733 -2.4057 -0.1081
11 6 3.2232 -3.5747 -0.0952
12 6 3.8529 -4.7987 -0.2038
13 6 5.2293 -4.8615 -0.3259
14 6 5.9789 -3.6996 -0.3391
15 6 7.4782 -3.7726 -0.4728
16 7 7.8443 -3.7347 -1.8908
17 6 9.1414 -3.7874 -2.2535
18 8 10.0053 -3.8666 -1.4059
19 6 9.5180 -3.7490 -3.7121
20 1 8.8222 -4.2432 -4.3901
21 6 10.2316 -2.4965 -4.2235
22 1 10.3915 -1.6618 -3.5412
23 6 10.1597 -2.1784 -5.7064
24 8 10.0168 -1.0955 -6.2212
25 6 10.3069 -3.5269 -6.4028
26 6 11.3580 -4.2559 -5.5291
27 6 11.0074 -3.8154 -4.0579
28 1 11.7370 -3.9518 -3.2596
29 6 5.3554 -2.4725 -0.2247
30 1 -0.4850 0.8400 0.0004
31 1 2.1484 -3.5263 0.0005
32 1 3.2702 -5.7080 -0.1934
33 1 5.7196 -5.8201 -0.4102
34 1 7.8377 -4.7011 -0.0294
35 1 7.9305 -2.9250 0.0420
36 1 7.1534 -3.6717 -2.5687
37 1 9.3606 -4.0680 -6.3995
38 1 10.6745 -3.3973 -7.4207
39 1 11.2653 -5.3362 -5.6392
40 1 12.3651 -3.9301 -5.7894
41 1 5.9418 -1.5656 -0.2304
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001646244744.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:38
Heat of formation + Delta-G solvation = -65.253428 kcal
Electronic energy + Delta-G solvation = -24554.330127 eV
Core-core repulsion = 20786.059190 eV
Total energy + Delta-G solvation = -3768.270937 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.89461 -41.01745 -40.27316 -38.72585 -38.16649 -35.81755 -34.47393 -32.62458
-31.95828 -30.99488 -27.84522 -27.38486 -27.13053 -25.20281 -23.34504 -22.36606
-21.94163 -20.86932 -20.23719 -19.70919 -19.17424 -18.50931 -17.11227 -16.96625
-16.80951 -16.78283 -16.60662 -16.06999 -15.82465 -15.70837 -15.43759 -15.30252
-14.83230 -14.49770 -14.33064 -14.21665 -14.19127 -13.86095 -13.44446 -13.25660
-13.13001 -12.61795 -12.57872 -12.49461 -12.39699 -12.32332 -11.96682 -11.55271
-11.47890 -11.34762 -11.06456 -10.92624 -10.46413 -10.17671 -9.80875 -9.14035
-8.52525 -6.24996 0.32426 0.58305 0.63427 1.29613 1.32441 1.45228
1.48874 2.04447 2.24989 2.67218 2.75840 2.98159 3.05277 3.12525
3.30124 3.49250 3.64354 3.71988 3.92589 4.03451 4.05203 4.13520
4.24701 4.26420 4.39568 4.48072 4.49536 4.63559 4.68359 4.73686
4.91165 4.96681 5.05296 5.14918 5.16388 5.16830 5.30636 5.36102
5.61087 5.67291 5.73352 5.87596 6.17671 6.38726 6.45950 6.82269
7.11843 7.56529 8.58949
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.013935 B = 0.002820 C = 0.002505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2008.892376 B = 9927.629224 C =11174.330688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C 0.012 3.988
3 Si 0.966 3.034
4 H -0.267 1.267
5 H -0.268 1.268
6 H -0.265 1.265
7 C -0.398 4.398
8 H 0.085 0.915
9 O -0.247 6.247
10 C 0.118 3.882
11 C -0.228 4.228
12 C -0.073 4.073
13 C -0.156 4.156
14 C -0.062 4.062
15 C 0.173 3.827
16 N -0.709 5.709
17 C 0.541 3.459
18 O -0.575 6.575
19 C -0.129 4.129
20 H 0.164 0.836
21 C -0.240 4.240
22 H 0.106 0.894
23 C 0.397 3.603
24 O -0.481 6.481
25 C -0.177 4.177
26 C -0.079 4.079
27 C -0.088 4.088
28 H 0.133 0.867
29 C -0.173 4.173
30 H 0.285 0.715
31 H 0.110 0.890
32 H 0.146 0.854
33 H 0.153 0.847
34 H 0.092 0.908
35 H 0.066 0.934
36 H 0.414 0.586
37 H 0.134 0.866
38 H 0.110 0.890
39 H 0.115 0.885
40 H 0.096 0.904
41 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.613 -13.960 -11.177 28.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.186 4.186
3 Si 0.789 3.211
4 H -0.192 1.192
5 H -0.192 1.192
6 H -0.190 1.190
7 C -0.474 4.474
8 H 0.103 0.897
9 O -0.154 6.154
10 C 0.070 3.930
11 C -0.247 4.247
12 C -0.091 4.091
13 C -0.175 4.175
14 C -0.062 4.062
15 C 0.050 3.950
16 N -0.360 5.360
17 C 0.328 3.672
18 O -0.455 6.455
19 C -0.150 4.150
20 H 0.181 0.819
21 C -0.260 4.260
22 H 0.124 0.876
23 C 0.274 3.726
24 O -0.355 6.355
25 C -0.214 4.214
26 C -0.116 4.116
27 C -0.107 4.107
28 H 0.151 0.849
29 C -0.192 4.192
30 H 0.094 0.906
31 H 0.128 0.872
32 H 0.163 0.837
33 H 0.171 0.829
34 H 0.110 0.890
35 H 0.084 0.916
36 H 0.251 0.749
37 H 0.151 0.849
38 H 0.128 0.872
39 H 0.133 0.867
40 H 0.114 0.886
41 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 22.045 -13.095 -10.807 27.825
hybrid contribution -1.083 1.310 0.323 1.730
sum 20.962 -11.784 -10.484 26.233
Atomic orbital electron populations
1.69718 1.06802 1.29571 1.50130 1.25218 0.95818 1.01956 0.95629
0.85281 0.78796 0.77830 0.79221 1.19182 1.19244 1.18959 1.20711
0.78008 0.96154 1.52526 0.89750 1.83524 1.21320 1.27509 1.83072
1.19586 0.92930 0.85260 0.95266 1.21416 1.00439 0.93300 1.09581
1.21165 0.95295 0.96356 0.96274 1.21056 0.93055 0.98251 1.05120
1.19462 0.94624 0.91964 1.00173 1.20085 0.89361 1.03280 0.82262
1.45973 1.07611 1.73675 1.08692 1.19885 0.82093 0.75182 0.89997
1.90703 1.49939 1.51265 1.53556 1.22174 0.99284 1.00025 0.93515
0.81879 1.23678 1.09970 0.94291 0.98053 0.87622 1.24910 0.67320
0.90366 0.90002 1.90434 1.38563 1.31326 1.75193 1.23201 1.03616
0.93186 1.01432 1.22583 0.98929 1.02709 0.87426 1.24110 0.92122
0.94149 1.00296 0.84876 1.20279 0.90617 0.98883 1.09449 0.90565
0.87212 0.83660 0.82912 0.88981 0.91557 0.74928 0.84871 0.87200
0.86715 0.88574 0.86289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.50 13.96 21.62 0.30 -54.19 16
2 C 0.01 0.71 5.49 84.84 0.47 1.18 16
3 Si 0.97 45.42 28.62 68.60 1.96 47.38 16
4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
7 C -0.40 -22.96 9.95 67.92 0.68 -22.29 16
8 H 0.09 5.06 5.44 -2.91 -0.02 5.04 16
9 O -0.25 -13.10 8.59 -22.72 -0.20 -13.30 16
10 C 0.12 5.27 6.65 22.58 0.15 5.42 16
11 C -0.23 -9.28 9.17 22.39 0.21 -9.07 16
12 C -0.07 -2.19 10.04 22.25 0.22 -1.97 16
13 C -0.16 -3.92 9.70 22.30 0.22 -3.70 16
14 C -0.06 -1.69 5.25 -19.88 -0.10 -1.79 16
15 C 0.17 3.93 5.80 85.63 0.50 4.42 16
16 N -0.71 -13.85 5.55 -466.79 -2.59 -16.44 16
17 C 0.54 11.13 7.61 87.65 0.67 11.80 16
18 O -0.57 -16.05 16.33 -3.04 -0.05 -16.10 16
19 C -0.13 -1.72 5.46 -11.54 -0.06 -1.78 16
20 H 0.16 1.07 7.12 -2.39 -0.02 1.05 16
21 C -0.24 -3.96 6.59 -10.89 -0.07 -4.03 16
22 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16
23 C 0.40 6.77 7.85 30.04 0.24 7.00 16
24 O -0.48 -12.74 17.99 -1.44 -0.03 -12.77 16
25 C -0.18 -1.20 6.32 31.07 0.20 -1.01 16
26 C -0.08 -0.37 6.87 32.84 0.23 -0.14 16
27 C -0.09 -1.00 6.82 -8.87 -0.06 -1.07 16
28 H 0.13 1.81 7.79 -2.38 -0.02 1.79 16
29 C -0.17 -6.21 9.64 22.39 0.22 -5.99 16
30 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16
31 H 0.11 4.98 5.64 -2.91 -0.02 4.96 16
32 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16
33 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16
34 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16
35 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16
36 H 0.41 6.82 8.46 -92.71 -0.78 6.03 16
37 H 0.13 0.36 7.32 -2.39 -0.02 0.34 16
38 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16
39 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16
40 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16
41 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16
Total: -1.00 -75.33 354.55 3.37 -71.96
By element:
Atomic # 1 Polarization: 16.17 SS G_CDS: 0.29 Total: 16.47 kcal
Atomic # 6 Polarization: -26.69 SS G_CDS: 3.67 Total: -23.01 kcal
Atomic # 7 Polarization: -68.34 SS G_CDS: -2.29 Total: -70.63 kcal
Atomic # 8 Polarization: -41.89 SS G_CDS: -0.27 Total: -42.16 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 1.96 Total: 47.38 kcal
Total: -75.33 3.37 -71.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001646244744.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.702 kcal
(2) G-P(sol) polarization free energy of solvation -75.328 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds