Wall clock time and date at job start Tue Mar 31 2020 11:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86809 * 119.99887 * 2 1 4 4 H 1.48496 * 109.46932 * 273.88046 * 3 2 1 5 5 H 1.48497 * 109.46712 * 33.87971 * 3 2 1 6 6 H 1.48499 * 109.47107 * 153.88199 * 3 2 1 7 7 C 1.40227 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99354 * 348.53896 * 7 2 1 9 9 C 1.41109 * 120.00350 * 168.53601 * 7 2 1 10 10 C 1.40890 * 120.09880 * 150.42140 * 9 7 2 11 11 C 1.36323 * 119.88405 * 179.97438 * 10 9 7 12 12 C 1.40004 * 120.10915 * 0.02759 * 11 10 9 13 13 C 1.47645 * 119.89590 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99889 * 339.38754 * 13 12 11 15 15 N 1.34772 * 120.00264 * 159.38879 * 13 12 11 16 16 C 1.47532 * 125.67129 * 354.50146 * 15 13 12 17 17 C 1.55127 * 104.96855 * 203.88591 * 16 15 13 18 18 C 1.53939 * 101.45926 * 324.20442 * 17 16 15 19 19 C 1.53309 * 111.07995 * 273.85318 * 18 17 16 20 20 C 1.54864 * 101.72641 * 253.24874 * 19 18 17 21 21 O 1.46160 * 104.45028 * 333.80097 * 20 19 18 22 22 C 1.34489 * 109.82154 * 30.23764 * 21 20 19 23 23 O 1.20827 * 125.35798 * 159.43113 * 22 21 20 24 24 C 1.47337 * 125.67071 * 174.47254 * 15 13 12 25 25 C 1.40010 * 120.21073 * 0.22855 * 12 11 10 26 26 C 1.36319 * 120.10958 * 359.48555 * 25 12 11 27 27 H 0.97000 * 120.00556 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.05735 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.94222 * 179.97438 * 11 10 9 30 30 H 1.09002 * 110.34031 * 322.75325 * 16 15 13 31 31 H 1.08999 * 110.34263 * 85.01288 * 16 15 13 32 32 H 1.08999 * 111.03053 * 206.15616 * 17 16 15 33 33 H 1.09006 * 111.02826 * 82.24537 * 17 16 15 34 34 H 1.08997 * 110.97763 * 11.35071 * 19 18 17 35 35 H 1.09000 * 110.97510 * 135.10141 * 19 18 17 36 36 H 1.08998 * 110.42890 * 92.77604 * 20 19 18 37 37 H 1.09005 * 110.41810 * 215.25079 * 20 19 18 38 38 H 1.08994 * 109.96700 * 58.74879 * 24 15 13 39 39 H 1.09001 * 109.96621 * 297.49233 * 24 15 13 40 40 H 1.08009 * 119.94724 * 179.72466 * 25 12 11 41 41 H 1.07994 * 120.05627 * 180.25255 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4059 2.0938 -1.3968 5 1 1.4812 2.6276 0.7805 6 1 3.5766 1.4180 0.6163 7 6 2.0077 -1.2143 -0.0005 8 1 1.4838 -2.1404 0.1849 9 6 3.3976 -1.2264 -0.2434 10 6 4.2064 -2.2277 0.3296 11 6 5.5486 -2.2355 0.0916 12 6 6.1237 -1.2504 -0.7201 13 6 7.5781 -1.2630 -0.9743 14 8 8.3220 -1.8590 -0.2194 15 7 8.0811 -0.6138 -2.0429 16 6 7.2905 0.0490 -3.0975 17 6 8.2235 0.0828 -4.3363 18 6 9.5966 0.3112 -3.6789 19 6 9.8607 1.8051 -3.4583 20 6 10.9181 2.1023 -4.5501 21 8 11.5797 0.8188 -4.7761 22 6 10.7160 -0.1862 -4.5461 23 8 10.8267 -1.3133 -4.9671 24 6 9.5121 -0.4476 -2.3519 25 6 5.3249 -0.2502 -1.2874 26 6 3.9809 -0.2374 -1.0599 27 1 -0.4851 0.8400 0.0004 28 1 3.7635 -2.9883 0.9555 29 1 6.1695 -3.0024 0.5307 30 1 6.3915 -0.5275 -3.3159 31 1 7.0274 1.0622 -2.7935 32 1 7.9646 0.9090 -4.9985 33 1 8.1988 -0.8670 -4.8706 34 1 8.9556 2.3898 -3.6225 35 1 10.2653 1.9870 -2.4627 36 1 10.4350 2.4515 -5.4626 37 1 11.6367 2.8401 -4.1928 38 1 9.9874 -1.4235 -2.4502 39 1 9.9990 0.1262 -1.5634 40 1 5.7737 0.5103 -1.9093 41 1 3.3649 0.5321 -1.5012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647623052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:17 Heat of formation + Delta-G solvation = -79.945319 kcal Electronic energy + Delta-G solvation = -26061.437425 eV Core-core repulsion = 22292.529399 eV Total energy + Delta-G solvation = -3768.908025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84964 -39.61553 -37.79323 -37.73907 -36.89913 -33.92942 -33.17881 -30.90651 -30.19343 -30.10978 -28.98545 -26.37229 -24.72861 -23.83476 -22.57702 -21.84596 -20.96622 -20.19558 -19.48659 -17.67948 -17.38750 -17.29166 -16.71676 -16.02651 -15.88478 -15.76333 -15.17530 -14.74978 -14.43146 -14.07950 -13.92227 -13.79763 -13.24186 -13.18258 -13.05917 -12.83379 -12.66317 -12.43331 -12.30182 -12.18680 -11.98098 -11.79431 -11.58831 -11.16489 -11.02813 -10.94093 -10.81438 -10.43242 -10.38265 -10.17554 -9.80861 -9.37144 -9.21634 -8.49514 -7.97602 -7.78886 -7.23114 -4.78053 1.68714 1.96216 2.60851 2.81476 2.88346 3.04985 3.13100 3.18367 3.47576 3.64051 3.76227 3.78275 3.92437 4.28956 4.36123 4.39923 4.58544 4.89455 4.97663 5.00478 5.19539 5.23150 5.31306 5.38874 5.42753 5.56122 5.64665 5.67033 5.80458 5.84144 5.93379 6.32481 6.33460 6.43956 6.58294 6.65975 6.91476 7.14183 7.19479 7.29712 7.46291 7.62207 7.85998 7.90270 8.06321 8.39483 8.49629 8.75964 9.76849 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003435 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.040589 B = 8148.478274 C = 8884.305868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.079 3.921 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.238 1.238 7 C -0.421 4.421 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.219 4.219 11 C -0.018 4.018 12 C -0.279 4.279 13 C 0.591 3.409 14 O -0.563 6.563 15 N -0.624 5.624 16 C 0.103 3.897 17 C -0.115 4.115 18 C -0.144 4.144 19 C -0.144 4.144 20 C 0.054 3.946 21 O -0.347 6.347 22 C 0.501 3.499 23 O -0.441 6.441 24 C 0.137 3.863 25 C -0.052 4.052 26 C -0.249 4.249 27 H 0.291 0.709 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.340 9.607 -8.976 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.746 3.254 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.448 4.448 8 H 0.114 0.886 9 C 0.102 3.898 10 C -0.238 4.238 11 C -0.037 4.037 12 C -0.283 4.283 13 C 0.387 3.613 14 O -0.443 6.443 15 N -0.360 5.360 16 C -0.020 4.020 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.182 4.182 20 C -0.020 4.020 21 O -0.264 6.264 22 C 0.340 3.660 23 O -0.322 6.322 24 C 0.014 3.986 25 C -0.070 4.070 26 C -0.268 4.268 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.675 8.760 -8.745 18.444 hybrid contribution -0.006 0.906 -0.035 0.907 sum 13.669 9.665 -8.780 18.903 Atomic orbital electron populations 1.69558 1.08286 1.31014 1.32495 1.26380 0.94936 1.02280 0.90718 0.86197 0.81301 0.78866 0.79000 1.19480 1.21847 1.16090 1.19796 0.91319 0.95710 1.37994 0.88593 1.17886 0.93234 0.90652 0.87979 1.20723 0.92777 1.03698 1.06593 1.20427 0.94595 0.95308 0.93387 1.18776 0.90322 1.04896 1.14309 1.18329 0.88750 0.76149 0.78060 1.90683 1.61281 1.44862 1.47468 1.48382 1.05382 1.57151 1.25123 1.22686 0.95456 0.98068 0.85743 1.22812 0.90549 1.04199 0.97782 1.22200 0.97340 0.97272 0.97839 1.23024 1.00754 0.93580 1.00813 1.24263 0.95611 0.82838 0.99299 1.87206 1.39221 1.17398 1.82591 1.22374 0.81227 0.84588 0.77811 1.90740 1.73602 1.17759 1.50139 1.21472 0.84702 1.00070 0.92334 1.20968 0.93724 0.96093 0.96216 1.20659 0.94714 1.04234 1.07180 0.89808 0.87554 0.87700 0.88652 0.90845 0.88881 0.89133 0.87756 0.88501 0.89329 0.86935 0.90725 0.90682 0.87219 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.43 13.92 55.56 0.77 -18.66 16 2 C 0.08 1.89 5.48 -17.31 -0.09 1.80 16 3 Si 0.92 19.02 24.35 -169.99 -4.14 14.88 16 4 H -0.27 -5.25 6.74 56.52 0.38 -4.87 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.24 -5.09 6.47 56.52 0.37 -4.73 16 7 C -0.42 -10.54 9.61 -37.75 -0.36 -10.91 16 8 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.11 2.51 5.19 -106.80 -0.55 1.96 16 10 C -0.22 -4.92 9.73 -39.27 -0.38 -5.30 16 11 C -0.02 -0.39 9.52 -39.61 -0.38 -0.77 16 12 C -0.28 -5.84 5.75 -104.73 -0.60 -6.44 16 13 C 0.59 11.83 7.67 -12.42 -0.10 11.73 16 14 O -0.56 -12.92 16.85 5.28 0.09 -12.83 16 15 N -0.62 -9.72 3.34 -171.98 -0.57 -10.29 16 16 C 0.10 1.23 4.86 -2.35 -0.01 1.22 16 17 C -0.12 -1.07 5.90 -25.12 -0.15 -1.22 16 18 C -0.14 -1.40 0.75 -155.26 -0.12 -1.52 16 19 C -0.14 -0.86 6.27 -25.59 -0.16 -1.02 16 20 C 0.05 0.28 7.93 38.14 0.30 0.58 16 21 O -0.35 -3.49 11.09 -39.58 -0.44 -3.93 16 22 C 0.50 5.94 7.23 35.71 0.26 6.19 16 23 O -0.44 -6.86 17.84 -18.37 -0.33 -7.18 16 24 C 0.14 1.81 6.13 -3.54 -0.02 1.79 16 25 C -0.05 -1.01 8.01 -39.61 -0.32 -1.33 16 26 C -0.25 -5.44 6.83 -39.27 -0.27 -5.71 16 27 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 28 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.10 2.20 7.77 -52.48 -0.41 1.80 16 30 H 0.10 1.25 6.64 -51.93 -0.34 0.90 16 31 H 0.07 0.75 6.88 -51.93 -0.36 0.39 16 32 H 0.09 0.57 7.87 -51.93 -0.41 0.16 16 33 H 0.09 0.97 7.99 -51.93 -0.41 0.55 16 34 H 0.10 0.45 7.68 -51.93 -0.40 0.05 16 35 H 0.10 0.56 7.41 -51.93 -0.38 0.18 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 1.13 7.82 -51.93 -0.41 0.73 16 39 H 0.08 0.93 7.39 -51.93 -0.38 0.54 16 40 H 0.11 1.76 4.20 -52.48 -0.22 1.54 16 41 H 0.10 2.15 4.15 -52.49 -0.22 1.93 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -31.06 331.08 -7.41 -38.46 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.83 Total: 3.51 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.95 Total: -8.95 kcal Atomic # 7 Polarization: -29.15 SS G_CDS: 0.20 Total: -28.95 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.68 Total: -23.94 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.14 Total: 14.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.06 -7.41 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647623052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.480 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds